HHsearch alignment for GI: 254780272 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=97.25 E-value=0.0044 Score=39.95 Aligned_cols=133 Identities=18% Similarity=0.273 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECC-------CCCHH----------------HHHHHHHHHHHCCCCEEE
Q ss_conf 318989999999999974115769769-999368-------76146----------------789999998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSP-------GGVVT----------------AGMAIYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSp-------GG~v~----------------~glaIyD~i~~i~~~V~T 105 (216)
T Consensus 30 al~~~~~~~L~~~l~~~~~---d~~vr~vVl~sg~g~~F~AGaDl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 106 (706)
T PRK11154 30 TLKAEFAEQVRAILKQIKE---DKSLKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVA 106 (706)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999999999999850---9996699995179980470729776724787577999998889999999809998899
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9831556652000024677714554415664412566--66----55541289999999999999999999871999899
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG--GF----SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~--~~----~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~ 179 (216)
T Consensus 107 AvnG~a~GgG~ElaLacD--~RiAs~~a~~~~g~Pev~lGl~Pg~Ggt-~rL-------pR-----------liG~--~~ 163 (706)
T PRK11154 107 AIHGACLGGGLELALACH--YRVCTDDPKTVLGLPEVQLGLLPGSGGT-QRL-------PR-----------LIGV--ST 163 (706)
T ss_pred EECCEEEHHHHHHHHHCC--EEEECCCCCCCCCCCCCEECCCCCCCCH-HHC-------CH-----------HCCH--HH
T ss_conf 987864189999999689--9996178463213643102778899724-022-------11-----------2389--99
Q ss_pred HHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 99972458588889999758864460454
Q gi|254780272|r 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 180 i~~~~~rD~~lsa~EA~eyGliD~Ii~~~ 208 (216)
T Consensus 164 A~eliltG~~i~A~eA~~~GLVd~VVp~~ 192 (706)
T PRK11154 164 ALDMILTGKQLRAKQALKLGLVDDVVPQS 192 (706)
T ss_pred HHHHHHCCCCCCHHHHHHCCCCCEECCCH
T ss_conf 99764007878899999779875515908