HHsearch alignment for GI: 254780272 and conserved domain: PRK11778
>PRK11778 putative periplasmic protease; Provisional.
Probab=98.38 E-value=3.5e-06 Score=59.48 Aligned_cols=160 Identities=26% Similarity=0.335 Sum_probs=90.4
Q ss_pred EEEE---CCCCCHHH----HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH-HHHHHH--HHHHCCCCEEEEEEC-CCC
Q ss_conf 7998---78318989----999999999974115769769999368761467-899999--986448734899831-556
Q gi|254780272|r 44 IVFV---TGQIEDHM----ATLICAQLLFLEAENPQKEISLYINSPGGVVTA-GMAIYD--TMQFIKPPISTFCMG-QAA 112 (216)
Q Consensus 44 iifl---~g~I~~~~----a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~-glaIyD--~i~~i~~~V~Ti~~G-~aa 112 (216)
T Consensus 70 r~fvldF~Gdi~As~v~~LReeitai-L--~~a~~~DeV~~rles~GG~v~~yglaasql~rlr~~~i~l-tv~vd~VAA 145 (317)
T PRK11778 70 RVFVLDFKGDIDASEVESLREEITAI-L--AVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPL-TVCVDKVAA 145 (317)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-H--HHCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCE-EEEEEEEEC
T ss_conf 39999546860377677789999999-9--7487898699999789956660577999999998679928-999701302
Q ss_pred CCCCCCCCCCCCCCEEECCCHHH------H----HHHHHH--H------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 65200002467771455441566------4----412566--6------65554128-----999999999999999999
Q gi|254780272|r 113 SMGSLLLSAGEKGMRFALPNARI------L----LHQPSG--G------FSGQASDI-----ERHAQDIVKIKRRLNEIY 169 (216)
Q Consensus 113 S~aslIl~aG~~g~R~~~pns~i------M----iHqps~--~------~~G~~~di-----~~~a~el~~~~~~l~~i~ 169 (216)
T Consensus 146 SGGY~mAc~AD--kIvA~P~tItGSIGVia~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f~e~T~e~r~k~q~~le~~h 223 (317)
T PRK11778 146 SGGYMMACVAD--KIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDFELHTAGEYKRTLTLFGENTEEGREKFREELEETH 223 (317)
T ss_pred CCCEEEEECCC--EEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 43022652188--7998786346532101666588999998599659981456777778889999999999999999999
Q ss_pred HHHC-----CCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCC
Q ss_conf 9871-----9998999997245858888999975886446045422
Q gi|254780272|r 170 VKNC-----GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210 (216)
Q Consensus 170 a~~T-----g~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e 210 (216)
T Consensus 224 ~~Fk~~Va~~Rp~~did~V-AtGrvW~G~qAlelGLVDeIgTsDd~ 268 (317)
T PRK11778 224 QLFKDFVQRYRPQLDIDKV-ATGEHWYGQQALELGLVDEIQTSDDY 268 (317)
T ss_pred HHHHHHHHHCCCCCCHHHH-CCCCEEEHHHHHHCCCCCCCCCHHHH
T ss_conf 9999999863984547875-68757757769875997425668999