HHsearch alignment for GI: 254780272 and conserved domain: cd07015
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.51 E-value=2.9e-13 Score=104.20 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=125.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE---ECCCCCCCCCCCC
Q ss_conf 7998783189899999999999741157697699993687614678999999864487348998---3155665200002
Q gi|254780272|r 44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC---MGQAASMGSLLLS 120 (216)
Q Consensus 44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~---~G~aaS~aslIl~ 120 (216)
T Consensus 3 vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~vii~ldTPGG~~~a~~~I~~~i~~s~vPv~~yV~P~g~~A~SAGa~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9997267868899999999999997-799899999868962899999999999829999899994799626769999998
Q ss_pred CCCCCCEEECCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHC
Q ss_conf 46777145544156644125666--6555412899999999999999999998719998999997245858888999975
Q gi|254780272|r 121 AGEKGMRFALPNARILLHQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198 (216)
Q Consensus 121 aG~~g~R~~~pns~iMiHqps~~--~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~ey 198 (216)
T Consensus 82 aa~--~~~MaPgt~iGaA~PV~~~g~~~~~~~~--~~K~~n~~~-a~~rs~Ae~rGRn~~~ae~~V~e~~slta~eAl~~ 156 (172)
T cd07015 82 GSH--LIAMAPGTSIGACRPILGYSQNGSIIEA--PPKITNYFI-AYIKSLAQESGRNATIAEEFITKDLSLTPEEALKY 156 (172)
T ss_pred HCC--HHEECCCCCCCCCCEEECCCCCCCCCCC--CHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHC
T ss_conf 554--3206799874357632068988886655--477899999-99999999859988999999874247599999976
Q ss_pred CCCCEEECCCCCCCCC
Q ss_conf 8864460454225101
Q gi|254780272|r 199 GVVDKVLMSRIDIEEK 214 (216)
Q Consensus 199 GliD~Ii~~~~e~~~~ 214 (216)
T Consensus 157 gviD~iA~~~~eLL~k 172 (172)
T cd07015 157 GVIEVVARDINELLKK 172 (172)
T ss_pred CCCEEEECCHHHHHHC
T ss_conf 9817885999999509