HHsearch alignment for GI: 254780272 and conserved domain: cd07015

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.51  E-value=2.9e-13  Score=104.20  Aligned_cols=165  Identities=19%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE---ECCCCCCCCCCCC
Q ss_conf             7998783189899999999999741157697699993687614678999999864487348998---3155665200002
Q gi|254780272|r   44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC---MGQAASMGSLLLS  120 (216)
Q Consensus        44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~---~G~aaS~aslIl~  120 (216)
T Consensus         3 vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~vii~ldTPGG~~~a~~~I~~~i~~s~vPv~~yV~P~g~~A~SAGa~I~~   81 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   81 (172)
T ss_pred             EEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             9997267868899999999999997-799899999868962899999999999829999899994799626769999998


Q ss_pred             CCCCCCEEECCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHC
Q ss_conf             46777145544156644125666--6555412899999999999999999998719998999997245858888999975
Q gi|254780272|r  121 AGEKGMRFALPNARILLHQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW  198 (216)
Q Consensus       121 aG~~g~R~~~pns~iMiHqps~~--~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~ey  198 (216)
T Consensus        82 aa~--~~~MaPgt~iGaA~PV~~~g~~~~~~~~--~~K~~n~~~-a~~rs~Ae~rGRn~~~ae~~V~e~~slta~eAl~~  156 (172)
T cd07015          82 GSH--LIAMAPGTSIGACRPILGYSQNGSIIEA--PPKITNYFI-AYIKSLAQESGRNATIAEEFITKDLSLTPEEALKY  156 (172)
T ss_pred             HCC--HHEECCCCCCCCCCEEECCCCCCCCCCC--CHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHC
T ss_conf             554--3206799874357632068988886655--477899999-99999999859988999999874247599999976


Q ss_pred             CCCCEEECCCCCCCCC
Q ss_conf             8864460454225101
Q gi|254780272|r  199 GVVDKVLMSRIDIEEK  214 (216)
Q Consensus       199 GliD~Ii~~~~e~~~~  214 (216)
T Consensus       157 gviD~iA~~~~eLL~k  172 (172)
T cd07015         157 GVIEVVARDINELLKK  172 (172)
T ss_pred             CCCEEEECCHHHHHHC
T ss_conf             9817885999999509