HHsearch alignment for GI: 254780272 and conserved domain: cd07016
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=1.4e-45 Score=307.59 Aligned_cols=156 Identities=31% Similarity=0.481 Sum_probs=148.7
Q ss_pred EEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 7998783189---8999999999997411576976999936876146789999998644873489983155665200002
Q gi|254780272|r 44 IVFVTGQIED---HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120 (216)
Q Consensus 44 iifl~g~I~~---~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~ 120 (216)
T Consensus 2 ~i~~~g~i~~~~~~~~~~~~---~~L~~~~~~k~I~l~INSpGG~v~~~~~I~d~i~~~~~~V~t~~~G~aaS~g~~I~~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFK---DALDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEEEECCCCCCCHHHHH---HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
T ss_conf 69999556377683999999---999827999997999989985899999999999867959899992707788999985
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCC
Q ss_conf 46777145544156644125666655541289999999999999999999871999899999724585888899997588
Q gi|254780272|r 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200 (216)
Q Consensus 121 aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGl 200 (216)
T Consensus 79 ag~--kr~~~~~s~imiH~~s~~~~G~~~d~~~~~~~~~~~~~~~~~~~~~~tg~~~~~i~~~~~~d~w~sa~EA~e~Gl 156 (160)
T cd07016 79 AGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred CCC--EEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEECHHHHHHCCC
T ss_conf 498--599845787541686656787889999999999999999999999881999999999865990843999998489
Q ss_pred CCEE
Q ss_conf 6446
Q gi|254780272|r 201 VDKV 204 (216)
Q Consensus 201 iD~I 204 (216)
T Consensus 157 iD~I 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCCC
T ss_conf 8729