BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62] (216 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 450 bits (1157), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60 MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC Sbjct: 1 MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60 Query: 61 AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120 AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS Sbjct: 61 AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120 Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV Sbjct: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK Sbjct: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216 >gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 293 Score = 30.8 bits (68), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%) Query: 45 VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PP 102 + + GQIED + ++ + ++ + + ++SPGG AG AI+ +Q +K P Sbjct: 41 IAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 Query: 103 ISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQ 139 + T AAS G L+ A G G+ F P + L + Sbjct: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Query: 24 EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70 ++T+RG ++I + L+K+RI T +I M +I + E EN Sbjct: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH---FEKEN 847 >gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62] Length = 109 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 128 FALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 ++ P R +L GG S+ H +++ KR L NCG ++E + Sbjct: 45 YSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERI 99 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,570 Number of Sequences: 1233 Number of extensions: 4891 Number of successful extensions: 16 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 9 length of query: 216 length of database: 328,796 effective HSP length: 70 effective length of query: 146 effective length of database: 242,486 effective search space: 35402956 effective search space used: 35402956 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 36 (18.5 bits)