BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease
proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score =  450 bits (1157), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60
           MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC
Sbjct: 1   MSFEGCAKKDSEDVFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLIC 60

Query: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120
           AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS
Sbjct: 61  AQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120

Query: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV
Sbjct: 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180

Query: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216
           EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK
Sbjct: 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEKSK 216


>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 293

 Score = 30.8 bits (68), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 45  VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PP 102
           + + GQIED     +  ++  +  ++    + + ++SPGG   AG AI+  +Q +K   P
Sbjct: 41  IAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98

Query: 103 ISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQ 139
           + T     AAS G L+  A            G  G+ F  P  +  L +
Sbjct: 99  VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 24.3 bits (51), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAEN 70
           ++T+RG   ++I + L+K+RI   T +I   M  +I +     E EN
Sbjct: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH---FEKEN 847


>gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 109

 Score = 23.9 bits (50), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 128 FALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180
           ++ P  R +L      GG     S+   H   +++ KR L      NCG ++E +
Sbjct: 45  YSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERI 99


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,570
Number of Sequences: 1233
Number of extensions: 4891
Number of successful extensions: 16
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 216
length of database: 328,796
effective HSP length: 70
effective length of query: 146
effective length of database: 242,486
effective search space: 35402956
effective search space used: 35402956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)