RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 49.2 bits (117), Expect = 3e-06
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 35/210 (16%)
Query: 12 LSKVF--GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69
L K+F + +D +N++FY + LG NGAGK+T L I+ G+ +G
Sbjct: 934 LVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV------ 987
Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY---NELMMNYSE---KTEEEIAKLQ 123
VG E LD V++++ G+ + IL + E ++ Y++ ++ EE
Sbjct: 988 LVGGKDIETNLD---AVRQSL--GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA---- 1038
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
LE E + LH + LSGG +R++++ + +++LDEP
Sbjct: 1039 ---------QLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088
Query: 184 TNHLDAETIAWMEKYLREY-SG-AVLMVTH 211
T+ +D + + L +Y SG ++M TH
Sbjct: 1089 TSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118