RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR02211
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221
Score = 72.8 bits (179), Expect = 2e-13
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 33/213 (15%)
Query: 317 VIEAKGISKSYNDRLL----IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
+++ + + K Y + L + +S + G IV ++G +G+GK+TL +L G ++P SG
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 373 TIHV-GETV-CLSYVDQSR------------DSLEAEKTVWEDISGGDDIVKLNGHEINS 418
+ G+++ LS ++++ L + T E+++ I K + E
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE 120
Query: 419 RAY--CSAFNFKGGDQQQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
RAY + RI LSGG+R RV +A+ L + +++L DEPT +LD
Sbjct: 121 RAYEMLEKVGLE-----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 473 TLSALEDAL----ENFAGCAVIISHDRMFLDRL 501
+ D + ++++HD +L
Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELAKKL 208