RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529
 Score =  117 bits (296), Expect = 6e-27
 Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 47/235 (20%)

Query: 9   MAGLSKVFG--SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE---- 62
            +GLS  +       L  ++ +  P  ++ ++GP+GAGKST+L ++ G      G     
Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382

Query: 63  -----AWLATGF--TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115
                   A  +   + ++PQ P L  + T+ ENI   +A   A               +
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFL-FAGTIAENI--RLARPDA---------------S 424

Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
           + EI   +  ++  GL +    V    + L     G     LSGG+ +R+AL +  L   
Sbjct: 425 DAEI---RRALERAGLDEF---VAALPQGLDTLI-GEGGAGLSGGQAQRLALARAFLRDA 477

Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDR 228
            LLLLDEPT HLDAET A + + LR  +    VL+VTH               DR
Sbjct: 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRL-------ALAERADR 525