RPSBLAST alignment for GI: 254780273 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 79.6 bits (196), Expect = 2e-15
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 323 ISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381
+ K+ + L ++ S ++G++GPNG GKTT +ML G PD G I + E
Sbjct: 6 MKKTLGEFTLEVEGGSIS--ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDT 62
Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ--QQRIGSL 439
+SY Q + + E TV + +S + +Q + + L
Sbjct: 63 VSYKPQYIKA-DYEGTVRDLLSS-----ITKDFYTHPYFKTEIAKPLQIEQILDREVPEL 116
Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDR 495
SGG+ RV +A L ++ LLDEP+ LD E + FA A ++ HD
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176
Query: 496 MFLDRLATHILAFEG 510
+ +D LA ++ FEG
Sbjct: 177 IMIDYLADRLIVFEG 191