RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] (539 letters) >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 567 bits (1462), Expect = e-162 Identities = 238/535 (44%), Positives = 339/535 (63%), Gaps = 14/535 (2%) Query: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64 + + LS +G + +L++++L+ P +IG++G NGAGKST+L+I+AG + +GE Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 G VGYL QEP LD KTV + +IEG + +L E ++ +E +A+L+ Sbjct: 62 RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 +++ W LE + A+ L P + ++SLSGG +RRVAL + LL PDLLLLDEPT Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181 Query: 185 NHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQM 244 NHLD E+I W+E YL+ Y G V++V+HDRYFLDNV ILE+DRGK PY+GNYS+YL+ Sbjct: 182 NHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 Query: 245 KAKRMAQENREEISRQKAIERERDWIVSSPKARQ--SKSKARIRSYEELVESAAHRHPGN 302 KA+R+ QE +QK + +E++WI A K+K+RI+ E+L A P Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVE 301 Query: 303 AQ-----IIIPVGKRLGHVVIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGK 356 P GKRLG +V+E + +SK Y+ RLL+ +LSF++ G + ++GPNGAGK Sbjct: 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGK 361 Query: 357 TTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEI 416 +TL ++L G+ P SGT+ VGETV + Y DQ RD L+ +KTV E++S G +G E Sbjct: 362 STLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEG----FPDGDEQ 417 Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 RAY F F G DQ++ +G LSGG++ R+ LAK+L N++LLDEPTN LD E+L A Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477 Query: 477 LEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531 LE+AL +F G +++SHDR FLDR+AT I E VE FEG +E+Y + K R Sbjct: 478 LEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE--DKVEEFEGGYEDYLEQKKER 530 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 253 bits (648), Expect = 7e-68 Identities = 158/533 (29%), Positives = 256/533 (48%), Gaps = 27/533 (5%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67 + LS F +++ D+ L + G++GPNG+GKST LR +AG E + Sbjct: 77 KIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG------REVPIPE 130 Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNE-LMMNYSEKTEEEIAKLQDII 126 L +E + + V+ ++E H++ L+ E L +K ++E+ +L + + Sbjct: 131 HIDFYLLSREIEPSEKQAVQAVVME-TDHERKRLEYLAEDLAQACDDKEKDELDELYERL 189 Query: 127 DSKGLWDLETE-VQVAIESLHCPADGLNIT-SLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 D E + ++ LSGG + R AL + L PDLLLLDEPT Sbjct: 190 DEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPT 249 Query: 185 NHLDAETIAWMEKYLREY-SGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243 NHLD E I W+E+YL +Y +++V+H + FL+ V I+ +D K I Y+GNY Y++ Sbjct: 250 NHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 Query: 244 MKAKRMAQENREEISRQKAIERERDWIVS----SPK-ARQSKSKARIRSYEE---LVESA 295 +++ + + +QK I +D I S K R+++SK + E L E Sbjct: 310 TRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKV 369 Query: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLI-DNLSFKLPPGGIVGVIGPNGA 354 P ++ VI + +S Y+D +I L+F + V ++GPNGA Sbjct: 370 VGE--KVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGA 427 Query: 355 GKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ-SRDSLEAEKTVWEDISGGDDIVKLNG 413 GK+TL +++TGD P G + L +Q + L+ +K+ E + Sbjct: 428 GKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMM---PKFPDEK 484 Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 R+ F G Q + LS GQR RV A++ +++LLDEPTN LD ET Sbjct: 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544 Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 + AL +A+ F G V++SHD + ++A I E NG V ++G+ E Y++ Sbjct: 545 IDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCE-NGTVTKWDGDIEIYKE 596 Score = 125 bits (315), Expect = 3e-29 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 35/238 (14%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP-- 78 + +N D+++ ++GPNGAGKST+L+++ G + G + + Q Sbjct: 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV 138 QLDL K+ E ++ + ++ E E + G + L + Sbjct: 465 QLDLDKSSLEFMMP-----------------KFPDEKELEEMRSI-----LGRFGLTGDA 502 Query: 139 QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKY 198 QV P ++ LS G++RRV +L + P LLLLDEPTNHLD ETI + + Sbjct: 503 QV------VP-----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551 Query: 199 LREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREE 256 + E+ G V++V+HD + V I + G + G+ Y + K+ A+E+ E Sbjct: 552 INEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKEDERE 609 Score = 110 bits (276), Expect = 1e-24 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 27/238 (11%) Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV------ 376 +S S++ LI +++ +L G G+IGPNG+GK+T R + G E P I Sbjct: 81 LSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSRE 140 Query: 377 ---GETVCLSYVDQSRDSLEA--EKTVWEDISGGDD------------IVKLNGHEINSR 419 E + V D E + DD + +++ ++ Sbjct: 141 IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAK 200 Query: 420 AY--CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 A F Q +++ LSGG R R LA+ L +++LLDEPTN LD E + L Sbjct: 201 AAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL 260 Query: 478 EDALENF-AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSR 534 E+ L + VI+SH + FL+ + T+I+ + N + ++EGN+++Y K + Sbjct: 261 EEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLD-NKKLIYYEGNYDQYVKTRSELEEN 317 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 230 bits (589), Expect = 5e-61 Identities = 153/529 (28%), Positives = 242/529 (45%), Gaps = 51/529 (9%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67 H+ +G K +L+ NL+ + G++G NG GKST+LR +A NG+ + Sbjct: 82 HIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIA------NGQV---S 132 Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 GF V QE + D ++ ++ + + EK L++I D Sbjct: 133 GFHV---EQEVRGDDTEALQSVLESDTERLDFL----------AEEKELLAGLTLEEIYD 179 Query: 128 S--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 GL E+Q+ SLSGG + R+AL + L + PDLLLLDEPTN Sbjct: 180 KILAGL-GFTPEMQL-----------QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTN 227 Query: 186 HLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMK 245 HLD +AW+E YL+ + L+V+HDR FL+ V I+ ++ K Y+GNYS +++ K Sbjct: 228 HLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 Query: 246 AKRMAQENREEISRQKAIERERDWIVS--SPKARQSKSKARIRSYEELVE-SAAHRHPGN 302 + + RE + K + +I AR S ++RI+ +L + Sbjct: 288 PEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLI 347 Query: 303 AQIIIPVGKRLGHVVIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360 + G+ L + ++ Y ++ L + +G NG GK+TL Sbjct: 348 GFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLL 407 Query: 361 RMLTGDESPDSGTIHVGETVCLSYVDQSR-DSLEAEKTVWEDISGGDDIVKLNGHEINS- 418 ++L GD +P G + + + Y Q D L+ D + K + Sbjct: 408 KILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAV------DFMEKSFPGKTEEE 461 Query: 419 -RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 R + +F G Q I SLSGGQ+ RV A + ++++LDEPTN LD ++L AL Sbjct: 462 IRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGAL 521 Query: 478 EDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 AL+NF G V++SHD F+ L + E +G V EG ++Y+K Sbjct: 522 AKALKNFNGGVVLVSHDEEFISSLCKELWVVE-DGKVTPIEGGIDKYKK 569 Score = 116 bits (292), Expect = 1e-26 Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 14/298 (4%) Query: 237 NYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAA 296 N + KR + + +K ER + SK ++ E A Sbjct: 8 NMEKLGKKGEKR---KEATRVDVKKLTERILAKQEKRFEKSVEGSKIQVVLEEAYASQAM 64 Query: 297 HRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGK 356 R+ G + + I+ +Y ++L++ + L G G++G NG GK Sbjct: 65 SRNSGELT---SGEGKSKDIHID--NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGK 119 Query: 357 TTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDI-VKLNGHE 415 +TL R + + HV + V + + LE++ + ++ ++ L E Sbjct: 120 STLLRAIA---NGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEE 176 Query: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 I + F Q Q SLSGG R R+ LA+ L + +++LLDEPTN LD ++ Sbjct: 177 IYDKILAG-LGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVA 235 Query: 476 ALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSS 533 LE+ L+ + ++I+SHDR FL+ + T I+ E +++++GN+ ++ K K Sbjct: 236 WLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENL-KLDYYKGNYSQFVKTKPEAKK 292 Score = 108 bits (272), Expect = 3e-24 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 35/242 (14%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 + + L D++I +G NG GKST+L+I+ G G + Sbjct: 370 FEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRI 429 Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL 131 Y Q L K V +D + ++ KTEEEI + L Sbjct: 430 KYFAQHHVDFLDKNVNA------------VDF---MEKSFPGKTEEEI--------RRHL 466 Query: 132 WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191 ++A++S I SLSGG+K RVA ++P LL+LDEPTNHLD ++ Sbjct: 467 GSFGLSGELALQS---------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 Query: 192 IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG---NYSAYLQMKAKR 248 + + K L+ ++G V++V+HD F+ ++ + V+ GK P +G Y L + + Sbjct: 518 LGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAELRA 577 Query: 249 MA 250 A Sbjct: 578 KA 579 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 198 bits (505), Expect = 3e-51 Identities = 140/539 (25%), Positives = 255/539 (47%), Gaps = 35/539 (6%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 K + + +L+ + G++GPNG GK+T+L+ +A + V QE Sbjct: 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA------ARALAIPPNIDVLLCEQEV 330 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID---SKGLWDLE 135 D S + + +++ + A+L+ +LM E +L+++ D + G E Sbjct: 331 VAD-STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAE 389 Query: 136 TEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193 + + L + T SGG + RV+L + L P LL+LDEPTNHLD + Sbjct: 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449 Query: 194 WMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQEN 253 W++ YL+ + +L+V+HD+ FLD+V I+ +D K Y+GNY+ + +M A++M QE+ Sbjct: 450 WLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKM-QEH 508 Query: 254 REEISRQ--------------KAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRH 299 + +Q K E++ ++ + + K E Sbjct: 509 EKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPK 568 Query: 300 PGNAQIIIPVGKRLGHVVIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT 358 + + P +L V+ ++ Y + L L F + + ++GPNG GK+T Sbjct: 569 EYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKST 628 Query: 359 LFRMLTGDESPDSGTIHVGETVCLSYVDQ-SRDSLEAEKTVWEDISGGDDIVKLNGHEIN 417 L ++L G P+ G + + + + DQ + ++L E+T E + ++ ++ Sbjct: 629 LLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNL----PYQ-E 683 Query: 418 SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 +R F +I LSGGQ+ RV LA++ G +V++LDEPTN+LD E++ AL Sbjct: 684 ARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDAL 743 Query: 478 EDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVL 536 +A+ + G +++SHD + ++ E G ++ +G+FE+Y+K+ L VL Sbjct: 744 AEAINEYNGGVIMVSHDERLIVETDCNLWVVENQG-IDEIDGDFEDYKKEVLDALGEVL 801 Score = 91.3 bits (226), Expect = 7e-19 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 35/211 (16%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 G K + ++ D++I I+GPNG GKST+L+++ G +GE +G+ Q Sbjct: 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQ 657 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136 NE + E+T E + + + + E Sbjct: 658 H--------------------------ANEALN--GEETPVEYLQRKFNLPYQ-----EA 684 Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196 Q+ L A + I LSGG+K RVAL +L L PD+L+LDEPTN+LD E+I + Sbjct: 685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALA 744 Query: 197 KYLREYSGAVLMVTHDRYFL--DNVTNWILE 225 + + EY+G V+MV+HD + + W++E Sbjct: 745 EAINEYNGGVIMVSHDERLIVETDCNLWVVE 775 Score = 75.9 bits (186), Expect = 3e-14 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 40/331 (12%) Query: 235 QGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSP----KARQSKSKARIRSYEE 290 + K K A+ N ++ + + V + ++ K + YE Sbjct: 170 ALKNKISKEEKKKAKAKPNYKKAALSMGEKTPEPVPVVENEPEVEGQEKKKQKDQEEYER 229 Query: 291 LVES-AAHRHPGNAQIIIPVGKRLGH-------VVIEAKGISKSYNDRLLIDNLSFKLPP 342 +E + GN + + K + I+ + S +LL N S + Sbjct: 230 QMEGIGSGAELGNHFTVSQLSKSGTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVY 289 Query: 343 GGIVGVIGPNGAGKTTLFRML--------------------TGDESPDSGTIHVGETVCL 382 G G++GPNG GKTTL + + D + T+ + L Sbjct: 290 GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRL 349 Query: 383 SYVDQSRDSL----EAEKTVWEDISGGDDIVKLNG---HEINSRAYCSAFNFKGGDQQQR 435 + +++ + E + T E + D ++ G E +R + F Q++ Sbjct: 350 ALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP 409 Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDR 495 SGG R RV LA+ L +++LDEPTN LD + L++ L+ + +I+SHD+ Sbjct: 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 Query: 496 MFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 FLD + T I+ + N + ++ GN+ ++K Sbjct: 470 GFLDSVCTDIIHLD-NQKLHYYRGNYTLFKK 499 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 159 bits (405), Expect = 1e-39 Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 51/195 (26%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE + +SK+Y +LL+ ++S + PG +G++G NGAGK+TL +++ G+ PD G + G Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437 TV + Y +Q Sbjct: 61 STVKIGYFEQ-------------------------------------------------- 70 Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMF 497 LSGG++ R+ LAK+L N++LLDEPTN LD E++ ALE+AL+ + G +++SHDR F Sbjct: 71 -LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF 129 Query: 498 LDRLATHILAFEGNG 512 LD++AT I+ E Sbjct: 130 LDQVATKIIELEDGK 144 Score = 121 bits (306), Expect = 4e-28 Identities = 47/74 (63%), Positives = 60/74 (81%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216 LSGGEK R+AL KLLL +P+LLLLDEPTNHLD E+I +E+ L+EY G V++V+HDRYFL Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130 Query: 217 DNVTNWILEVDRGK 230 D V I+E++ GK Sbjct: 131 DQVATKIIELEDGK 144 Score = 76.3 bits (188), Expect = 2e-14 Identities = 27/69 (39%), Positives = 42/69 (60%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67 + LSK +G K +L DI+L+ P +IG++G NGAGKST+L+++AG + G + Sbjct: 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61 Query: 68 GFTVGYLPQ 76 +GY Q Sbjct: 62 TVKIGYFEQ 70 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 147 bits (372), Expect = 9e-36 Identities = 125/570 (21%), Positives = 207/570 (36%), Gaps = 134/570 (23%) Query: 11 GLSKVF----GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE-------- 58 L+ F G + D++ P +GI+G +G+GKST+ + G+ E Sbjct: 10 NLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGE 69 Query: 59 --YNGEAWLAT---------GFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYN 105 +G L G + + Q+P L+ T+ + I E Sbjct: 70 VILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA------------ 117 Query: 106 ELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRV 165 L ++ E + ++++ GL D E + + LSGG ++RV Sbjct: 118 -LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ-------------LSGGMRQRV 163 Query: 166 ALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD----RYFLD 217 + L P LL+ DEPT LD T + ++ RE AVL +THD D Sbjct: 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELAD 223 Query: 218 NVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKAR 277 V + M + + E I+S+P + Sbjct: 224 RV----------------------VVMYKGEIVETGPTE------------EILSNP--Q 247 Query: 278 QSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDR------- 330 ++ + + L + R P G ++ + +SK Y R Sbjct: 248 HPYTRGLLAAVPRLGDEKIIRLP-------RRGPLRAEPLLSVRNLSKRYGSRKGLFVRE 300 Query: 331 ----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH-VGETVCLSYV 385 +D++SF L G +G++G +G+GK+TL R+L G P SG+I G+ + L+ Sbjct: 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGG 360 Query: 386 DQSR-------------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ 432 + R SL TV + ++ I G Sbjct: 361 ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP 420 Query: 433 Q---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFA 485 + + LSGGQR RV +A+ L +++LDEP + LD L+ L+D E Sbjct: 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480 Query: 486 GCAVIISHDRMFLDRLATHILAFEGNGHVE 515 + ISHD + +A + VE Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVE 510 Score = 64.8 bits (158), Expect = 5e-11 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 32/232 (13%) Query: 316 VVIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD- 370 ++E + ++ + + ++SF++ PG I+G++G +G+GK+TL L G Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63 Query: 371 ---SGTIHVGETVCLSYVDQSRDSLEAEKTVW----------EDISGGDDIVKLN-GHEI 416 SG + + L ++ L ++ ++ GD I + H Sbjct: 64 RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123 Query: 417 NSRAYC-----SAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTN 467 SRA G +R LSGG R RV +A L +++ DEPT Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183 Query: 468 DLDTET----LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 LD T L L+D + I+HD + LA ++ VE Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 146 bits (370), Expect = 2e-35 Identities = 128/574 (22%), Positives = 224/574 (39%), Gaps = 120/574 (20%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 M+ + + G+SK FG K LD ++L+ P +LG NGAGKST+++I++G+ + Sbjct: 3 MSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS 62 Query: 61 GEAWL------------ATGFTVGYLPQEPQLDLSKTVKENIIEG--VAHKQAILDRYNE 106 GE + A + + QE L + +V ENI G + ++DR Sbjct: 63 GEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA- 121 Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVA 166 M + E +A+L ID L + LS +++ V Sbjct: 122 --MR--RRARELLARLGLDIDPDTL----------------------VGDLSIAQRQMVE 155 Query: 167 LCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWI 223 + + L +L+LDEPT L + + +R A++ ++H + + + I Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI 215 Query: 224 LEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKA 283 + G+ + A+ + +E+ R +V Sbjct: 216 TVLRDGRVV-----------GTRPTAAETSEDELVR---------LMVG----------- 244 Query: 284 RIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPG 343 R E+L G V+E + +S + ++SF + G Sbjct: 245 --RELEDLFPEPPEEGIGE-------------PVLEVRNLSGGG----KVRDVSFTVRAG 285 Query: 344 GIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLS-----------YV--DQSR 389 I+G+ G GAG+T L R L G SG I + G+ V + YV D+ Sbjct: 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKS 345 Query: 390 DSLEAEKTVWEDISGGDDIVKLNGHEINSRA-------YCSAFNFKGGDQQQRIGSLSGG 442 + L + ++ E+I+ I+ R Y K +Q IG+LSGG Sbjct: 346 EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGG 405 Query: 443 QRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-ISHDRMFLD 499 + +V LA+ L + V++LDEPT +D + + + A G A++ IS + L Sbjct: 406 NQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELL 465 Query: 500 RLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSS 533 L+ IL V + EE ++ + ++ Sbjct: 466 GLSDRILVMREGRIVGELDR--EEATEEAIMAAA 497 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 128 bits (322), Expect = 5e-30 Identities = 121/491 (24%), Positives = 205/491 (41%), Gaps = 77/491 (15%) Query: 35 IGILGPNGAGKSTILRIMAGIDK----EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENI 90 +GILGPNG GKST L+I+AG K Y + + K + E Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDE--VIKRFRGTELQNYFKKLYEGE 160 Query: 91 IEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPAD 150 + HK +Y +L+ + E+ K +D +G +D E ++ +E++ Sbjct: 161 LR-AVHK----PQYVDLIPKVVKGKVGELLKK---VDERGKFD-EVVERLGLENVL---- 207 Query: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVL 207 +++ LSGGE +RVA+ LL D+ DEP+++LD + +RE + V+ Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267 Query: 208 MVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERER 267 +V HD LD +++++ I Y G Y +S+ K++ R Sbjct: 268 VVEHDLAVLDYLSDFV-------HILY-GEPGVY-------------GVVSKPKSV---R 303 Query: 268 DWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSY 327 I K + R R E E R ++ E + K+Y Sbjct: 304 VGINEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTLV-----------EYPDLKKTY 352 Query: 328 ND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386 D +L ++ G ++G++GPNG GKTT ++L G PD G+ E + +SY Sbjct: 353 GDFKLEVEEGEIYD--GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKP 407 Query: 387 QSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN--FKGGD-QQQRIGSLSGGQ 443 Q S + + TV + + S + + D ++ + LSGG+ Sbjct: 408 Q-YISPDYDGTVEDLLR------SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGE 460 Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDRMFLD 499 RV +A L ++ LLDEP+ LD E + + F A+++ HD +D Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID 520 Query: 500 RLATHILAFEG 510 ++ ++ FEG Sbjct: 521 YVSDRLIVFEG 531 Score = 80.6 bits (199), Expect = 1e-15 Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 47/230 (20%) Query: 2 ARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG 61 AR + L K +G K L+ Y IGILGPNG GK+T ++++AG+ K G Sbjct: 338 ARDTLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396 Query: 62 EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 V Y PQ D TV++ + + AI + S + EI K Sbjct: 397 SEE---DLKVSYKPQYISPDYDGTVEDLL------RSAIRSAFG------SSYFKTEIVK 441 Query: 122 ---LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 L+D+++ + LSGGE +RVA+ L DL Sbjct: 442 PLNLEDLLER------------------------PVDELSGGELQRVAIAAALSREADLY 477 Query: 179 LLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHDRYFLDNVTNWIL 224 LLDEP+ +LD E + K +R L+V HD Y +D V++ ++ Sbjct: 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527 Score = 47.1 bits (112), Expect = 1e-05 Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 34/199 (17%) Query: 338 FKLP---PGGIVGVIGPNGAGKTTLFRMLTG---------DESPDSGTI--HVGETVCLS 383 ++LP PG +VG++GPNG GK+T ++L G ++ P + T + Sbjct: 92 YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQN 151 Query: 384 YVDQSRDSLEAEKTVWEDISGGD-----------DIVKLNGHEINSRAYCSAFNFKGGDQ 432 Y + E E D +++K + Sbjct: 152 YF---KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENV-L 207 Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI 490 + + LSGG+ RV +A L +V DEP++ LD + A G VI Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267 Query: 491 -ISHDRMFLDRLA--THIL 506 + HD LD L+ HIL Sbjct: 268 VVEHDLAVLDYLSDFVHIL 286 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 127 bits (322), Expect = 5e-30 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 44/229 (19%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---------- 66 G++ LDDI+L+ + I+GPNG+GKST+LR++ G+ +GE + Sbjct: 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLK 71 Query: 67 -TGFTVGYLPQEPQLDLSK-TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 VG + Q P TV+E + G + N EE ++++ Sbjct: 72 ELRRKVGLVFQNPDDQFFGPTVEEEVAFG--------------LENLGLPEEEIEERVEE 117 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 ++ GL L + +LSGG+K+RVA+ +L PD+LLLDEPT Sbjct: 118 ALELVGLEGLRDR---------------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 Query: 185 NHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGK 230 LD + + L++ +++VTHD L + + ++ ++ GK Sbjct: 163 AGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 Score = 115 bits (289), Expect = 4e-26 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 18/212 (8%) Query: 319 EAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 E K +S SY D R +D++S + G V ++GPNG+GK+TL R+L G P SG + V Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 Query: 377 GETVCLS-----------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425 V Q+ D TV E+++ G + + L EI R + Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120 Query: 426 NFKGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF 484 + R +LSGGQ+ RV +A +L +++LLDEPT LD L + L+ Sbjct: 121 LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180 Query: 485 AG---CAVIISHDRMFLDRLATHILAFEGNGH 513 +I++HD L LA ++ E +G Sbjct: 181 KAEGKTIIIVTHDLDLLLELADRVIVLE-DGK 211 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 125 bits (316), Expect = 3e-29 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 46/236 (19%) Query: 11 GLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69 L+K +G K LD ++ P G+LGPNGAGK+T+L+I+AG+ K +GE + G+ Sbjct: 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL-GY 67 Query: 70 -----------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 +GY+PQEP L TV+EN L+ + L E+ EE Sbjct: 68 DVVKEPAKVRRRIGYVPQEPSLYPELTVREN-----------LEFFARLYGLSKEEAEER 116 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 I +L ++ GL D + +LSGG K+R+++ LL P+LL Sbjct: 117 IEEL---LELFGLED---------------KANKKVRTLSGGMKQRLSIALALLHDPELL 158 Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG----AVLMVTHDRYFLDNVTNWILEVDRGK 230 +LDEPT+ LD E+ + + LRE + +L+ TH + + + ++ ++ GK Sbjct: 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214 Score = 119 bits (300), Expect = 2e-27 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 21/227 (9%) Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 VIE + ++K Y D+ +D +SF++ PG I G++GPNGAGKTTL ++L G P SG I Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63 Query: 376 V-GETV---------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCS 423 V G V + YV Q SL E TV E++ + L+ E R Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQE-PSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122 Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 F + +++ +LSGG + R+ +A L +++LDEPT+ LD E+ + + L Sbjct: 123 LFGLE-DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181 Query: 484 FA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 A G +++S H + L + +G + EG EE ++ Sbjct: 182 LAKEGGVTILLSTHILEEAEELCDRV-IILNDGKII-AEGTPEELKE 226 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 123 bits (310), Expect = 1e-28 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 38/217 (17%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-- 66 + L+ +G++ VL+DI+LS ++GPNGAGKST+L+ + G+ K +GE + Sbjct: 7 VENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66 Query: 67 ------TGFTVGYLPQEPQLDLS--KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 +GY+PQ+ +D S TVK+ ++ G K+ R N +++ Sbjct: 67 PVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN----------KKD 116 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 K+ + ++ G+ DL I LSGG+K+RV L + L +PDLL Sbjct: 117 KEKVDEALERVGMEDLRDR---------------QIGELSGGQKQRVLLARALAQNPDLL 161 Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHD 212 LLDEP +D + L+E VLMVTHD Sbjct: 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 Score = 113 bits (284), Expect = 1e-25 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 21/216 (9%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +IE + ++ SY +R +++++S + G I +IGPNGAGK+TL + + G P SG I + Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63 Query: 377 --------GETVCLSYVDQSRDSLEAE--KTVWEDISGGDDIVKLNGHEINSR---AYCS 423 + + + YV Q + S++ TV + + G K +N + Sbjct: 64 FGKPVRKRRKRLRIGYVPQ-KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122 Query: 424 AFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 A G + ++IG LSGGQ+ RV LA+ L +++LLDEP +D + D L Sbjct: 123 ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182 Query: 482 ENFA--GCAVI-ISHDRMFLDRLATHILAFEGNGHV 514 + G V+ ++HD + ++ N H+ Sbjct: 183 KELRQEGKTVLMVTHDLGLVMAYFDRVICL--NRHL 216 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 121 bits (305), Expect = 6e-28 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 17/211 (8%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377 E + ++ SY +++++SF++ PG + ++GPNGAGK+TL + + G P SG+I V G Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 Query: 378 ETVCLS-----YVDQSRD-SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS----AFNF 427 + + YV Q R + +V + + G S+A + A Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKGLFRRLSKADKAKVDEALER 119 Query: 428 KGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485 G + ++IG LSGGQ+ RV LA+ L +++LLDEP +D +T + + L Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179 Query: 486 --GCAVI-ISHDRMFLDRLATHILAFEGNGH 513 G ++ ++HD + +L Sbjct: 180 REGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 Score = 116 bits (293), Expect = 1e-26 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 36/233 (15%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA- 66 + L+ +G VL+D++ P + I+GPNGAGKST+L+ + G+ K +G + Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 Query: 67 -----TGFTVGYLPQEPQLDLSK--TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 +GY+PQ +D +V++ ++ G+ + + R ++ + Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL----------SKADK 110 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 AK+ + ++ GL +L I LSGG+++RV L + L+ PDLLL Sbjct: 111 AKVDEALERVGLSELADR---------------QIGELSGGQQQRVLLARALVQDPDLLL 155 Query: 180 LDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRG 229 LDEP +D +T + + LRE +L+VTHD + + +L ++R Sbjct: 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 119 bits (300), Expect = 2e-27 Identities = 73/212 (34%), Positives = 102/212 (48%), Gaps = 39/212 (18%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT--- 67 G+SK FG +VL+DINLS + ILGP+G GKST+LR++AG++K +GE L Sbjct: 8 GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 Query: 68 ---GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 G +GY+ QE L TV +N+ G+ EL + E +L + Sbjct: 68 TGPGPDIGYVFQEDALLPWLTVLDNVALGL-----------ELRGKSKAEARERAKELLE 116 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 ++ G D P LSGG ++RVA+ + L + P LLLLDEP Sbjct: 117 LVGLAGFED------------KYPHQ------LSGGMRQRVAIARALATRPKLLLLDEPF 158 Query: 185 NHLDAETIA----WMEKYLREYSGAVLMVTHD 212 LDA T + + E VL+VTHD Sbjct: 159 GALDALTREELQDELLRLWEETRKTVLLVTHD 190 Score = 106 bits (266), Expect = 2e-23 Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 14/191 (7%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++E +G+SKS+ ++++++ + G V ++GP+G GK+TL R++ G E P SG + Sbjct: 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 Query: 376 V-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAFNF 427 + G V + YV Q D+L TV ++++ G ++ + E RA Sbjct: 62 LDGRPVTGPGPDIGYVFQE-DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485 G + + LSGG R RV +A+ L + ++LLDEP LD T L+D L Sbjct: 121 AGF-EDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 Query: 486 -GCAVI-ISHD 494 V+ ++HD Sbjct: 180 TRKTVLLVTHD 190 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 119 bits (299), Expect = 3e-27 Identities = 126/547 (23%), Positives = 213/547 (38%), Gaps = 124/547 (22%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------ 62 M G++K F DD++LS +LG NGAGKST+++I+ G+ + +GE Sbjct: 7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK 66 Query: 63 ------AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTE 116 A +G + Q L + TV ENII G+ + L + Sbjct: 67 EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA--------- 117 Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 A+++++ + GL ++ + +VA LS GE++RV + K L Sbjct: 118 --RARIKELSERYGL-PVDPDAKVA--------------DLSVGEQQRVEILKALYRGAR 160 Query: 177 LLLLDEPTNHL-DAETIAWME--KYLREYSGAVLMVTHD----RYFLDNVTNWILEVDRG 229 LL+LDEPT L E E + L ++ +TH D VT +L RG Sbjct: 161 LLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT--VLR--RG 216 Query: 230 KGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYE 289 K + G +A+ EE++ + RE V + + + Sbjct: 217 KVV---GTV--------DPVAETTEEELAEL-MVGRE----VVLRVVKPPSTPGEV---- 256 Query: 290 ELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGIS-KSYNDRLLIDNLSFKLPPGGIVGV 348 V+E + +S K + ++SF++ G IVG+ Sbjct: 257 ---------------------------VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGI 289 Query: 349 IGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC------------LSYV--DQSRDSLE 393 G G G++ L ++G P SG I + G+ V L+YV D+ L Sbjct: 290 AGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349 Query: 394 AEKTVWEDI----SGGDDIVK---LNGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQR 444 + ++ E++ + L+ I A F+ + SLSGG + Sbjct: 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQ 409 Query: 445 GRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL--ENFAGCAVI-ISHDRMFLDRL 501 ++ LA+ L ++++ +PT LD + + + L AG AV+ IS D + L Sbjct: 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL 469 Query: 502 ATHILAF 508 + I Sbjct: 470 SDRIAVI 476 Score = 87.9 bits (218), Expect = 7e-18 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 26/200 (13%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +E +GI+K + + D++S + G I ++G NGAGK+TL ++L G PDSG I Sbjct: 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62 Query: 376 V-GETVCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVKLNGHEINS--- 418 V G+ V + RD++ TV E+I G + K + Sbjct: 63 VDGKEVRIK---SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA 119 Query: 419 --RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 + + D ++ LS G++ RV + K L G +++LDEPT L + Sbjct: 120 RIKELSERYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 Query: 477 LEDALENFA--GCAVI-ISH 493 L + L A G +I I+H Sbjct: 179 LFEILRRLAAEGKTIIFITH 198 Score = 57.1 bits (138), Expect = 1e-08 Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-----TGFT------ 70 + D++ +GI G G G+S ++ ++G+ K +G L + Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 Query: 71 --VGYLPQEPQ---LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 + Y+P++ L L ++ EN++ G H + R L K E+ + D+ Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 P+ SLSGG ++++ L + L PDLL+ +PT Sbjct: 393 --------------------RAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432 Query: 186 HLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEVDRGKGIP 233 LD I ++ + L E AVL+++ D + +++ I + G+ + Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 114 bits (287), Expect = 6e-26 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 40/217 (18%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65 LS +G K +LDD++ S GILGPNG+GKST+L+ +AG+ K +GE L Sbjct: 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 + Y+PQ P TV E ++ G RY L + + ++E+ Sbjct: 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG---------RYPHLGL-FGRPSKEDE 116 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 +++ ++ GL L + LSGGE++RV + + L +LL Sbjct: 117 EIVEEALELLGLEHL---------------ADRPVDELSGGERQRVLIARALAQETPILL 161 Query: 180 LDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 LDEPT+HLD E + + RE V+MV HD Sbjct: 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 Score = 113 bits (285), Expect = 9e-26 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 29/219 (13%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E + +S Y + ++D+LSF +P G I G++GPNG+GK+TL + L G P SG + + Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61 Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDIS-------GGDDIVKLNGHEINS 418 G+ + L+YV QS + TV+E + G EI Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFG-LTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120 Query: 419 RA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TE 472 A + + + LSGG+R RV +A+ L ++LLDEPT+ LD E Sbjct: 121 EALELLGLEHLA----DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176 Query: 473 TLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGN 511 L L D V++ HD R A H++ + Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 113 bits (285), Expect = 1e-25 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 14/213 (6%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E KG+SK+Y +D+LS + PG + ++GP+G GKTTL R++ G E PDSG I + Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60 Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 + R+ +L TV E+I+ G + + EI +R Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL 120 Query: 430 GDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENF 484 R LSGGQ+ RV LA+ L +++LLDEP + LD + L++ Sbjct: 121 EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180 Query: 485 AGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517 + ++HD+ LA I A G + Sbjct: 181 GITTIYVTHDQEEALALADRI-AVMNEGRIVQV 212 Score = 110 bits (276), Expect = 1e-24 Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 42/219 (19%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA- 66 + GLSK +GS + LDD++L+ P + +LGP+G GK+T+LR++AG+++ +GE + Sbjct: 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61 Query: 67 ---TGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 TG +G + Q+ L TV ENI G+ + E Sbjct: 62 RDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG--------------VPKAEI 107 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 A+++++++ GL L LSGG+++RVAL + L P LL Sbjct: 108 RARVRELLELVGLEGLLNR---------------YPHELSGGQQQRVALARALAREPSLL 152 Query: 179 LLDEPTNHLDAETIAWMEKYLREYSGA----VLMVTHDR 213 LLDEP + LDA+ + + L+E + VTHD+ Sbjct: 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ 191 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 113 bits (285), Expect = 1e-25 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE + +SK Y + +D++S + G I G++GPNGAGKTTL +++ G PDSG I V Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437 + + + E+ S ++ L E N K Sbjct: 61 GK---DIKKEPEEVKRRIGYLPEEPSLYEN---LTVRE----------NLK--------- 95 Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVII-SHD 494 LSGG + R+ LA+ L +++LDEPT+ LD E+ + L G +++ SH Sbjct: 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 Query: 495 RMFLDRLATHILAFEGNGHV 514 +RL + NG + Sbjct: 155 LEEAERLCDRVAILN-NGRI 173 Score = 78.9 bits (195), Expect = 3e-15 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 10/90 (11%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65 LSK +G K LDDI+L+ G+LGPNGAGK+T+++I+ G+ K +GE + Sbjct: 5 NLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI 64 Query: 66 -----ATGFTVGYLPQEPQLDLSKTVKENI 90 +GYLP+EP L + TV+EN+ Sbjct: 65 KKEPEEVKRRIGYLPEEPSLYENLTVRENL 94 Score = 72.0 bits (177), Expect = 4e-13 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDR 213 LSGG K+R+AL + LL P+LL+LDEPT+ LD E+ + LRE +L+ +H Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 Query: 214 YFLDNVTNWILEVDRGK 230 + + + + ++ G+ Sbjct: 156 EEAERLCDRVAILNNGR 172 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 112 bits (282), Expect = 2e-25 Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 43/216 (19%) Query: 11 GLSKVFGSK----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYN 60 +SK +G L+DI+LS + ++GP+G GKST+LRI+AG+++ + Sbjct: 5 NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVD 64 Query: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120 GE G GY+ Q+ L TV +N+ G+ + E Sbjct: 65 GEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV--------------PKAEARE 110 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 + +++++ GL E P LSGG ++RVAL + L PD+LLL Sbjct: 111 RAEELLELVGLSGFEN---------AYPHQ------LSGGMRQRVALARALAVDPDVLLL 155 Query: 181 DEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 DEP + LDA T +++ L RE VL+VTHD Sbjct: 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 Score = 102 bits (257), Expect = 2e-22 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 18/209 (8%) Query: 318 IEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 +E + +SK+Y ++++S + G V ++GP+G GK+TL R++ G E P SG Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 374 IHV-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAF 425 + V GE V YV Q +D+L TV ++++ G ++ + E RA Sbjct: 61 VLVDGEPVTGPGPDRGYVFQ-QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV 119 Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL---- 481 G + LSGG R RV LA+ L +V+LLDEP + LD T L++ L Sbjct: 120 GLSGF-ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178 Query: 482 ENFAGCAVIISHDRMFLDRLATHILAFEG 510 ++++HD LA ++ Sbjct: 179 RETGKTVLLVTHDIDEAVFLADRVVVLSA 207 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 111 bits (280), Expect = 4e-25 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 47/242 (19%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE--------------A 63 K L D+NL+ ++G +GAGKST+L ++ G GE A Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 W + ++ Q P L + T++ENI ++ + ++EEI Sbjct: 393 WRKQ---ISWVSQNPYL-FAGTIRENI-----------------LLARPDASDEEI---I 428 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 +D GL + ++++ G LSGG+ +R+AL + LLS LLLLDEP Sbjct: 429 AALDQAGLLEF-VPKPDGLDTVI----GEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 Query: 184 TNHLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAY 241 T HLDAET + + L+E + VL++TH + + I+ +D G+ + QG + Sbjct: 484 TAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA-DRIVVLDNGRLVE-QGTHEEL 541 Query: 242 LQ 243 + Sbjct: 542 SE 543 Score = 89.5 bits (222), Expect = 2e-18 Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 28/229 (12%) Query: 316 VVIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 + I + +S Y D + + +L+ + G + ++G +GAGK+TL +L G +P G I Sbjct: 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 Query: 375 HVGETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS---RA 420 V +S+V Q + T+ E+I + EI + +A Sbjct: 379 RVNGIDLRDLSPEAWRKQISWVSQ--NPYLFAGTIRENILLARP--DASDEEIIAALDQA 434 Query: 421 YCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 F K IG LSGGQ R+ LA+ L S +++LLDEPT LD ET Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494 Query: 477 LEDALENFA--GCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 + AL+ A ++I+H R+ A I+ + VE +G EE Sbjct: 495 ILQALQELAKQKTVLVITH-RLEDAADADRIVVLDNGRLVE--QGTHEE 540 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 111 bits (278), Expect = 6e-25 Identities = 82/340 (24%), Positives = 130/340 (38%), Gaps = 63/340 (18%) Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNGEA 63 + K FG+ LDDI+L + +LGP+GAGKST+LRI+AG++ NG Sbjct: 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRV 65 Query: 64 WLATGFT------VGYLPQEPQLDLSKTVKENIIEGV------AHKQAILDRYNELMMNY 111 VG++ Q L TV +NI G+ + I R EL+ Sbjct: 66 LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL--- 122 Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 + +L+ + D PA LSGG+++RVAL + L Sbjct: 123 ------RLVQLEGLADRY------------------PAQ------LSGGQRQRVALARAL 152 Query: 172 LSSPDLLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVD 227 P +LLLDEP LDA E W+ K + VTHD+ + + ++ ++ Sbjct: 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212 Query: 228 RGKGIPYQGNYSAYLQ----MKAKRMAQENR--EEISRQKAIERERDWIVSSPKARQSKS 281 +G+ Y A+ + + N E+ + D + K+ Sbjct: 213 QGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVILGQLQVGAHDIGLPLQPLPDGKA 272 Query: 282 KARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAK 321 +R ++ VE H + V V +E K Sbjct: 273 DLYVRPHD--VELLDHGRNTLPATVERVSPLGHTVRVELK 310 Score = 105 bits (263), Expect = 4e-23 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 I + K + +D++S + G +V ++GP+GAGK+TL R++ G E+PD+G I + Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62 Query: 378 ETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSRAYCS 423 V D S ++ K TV ++I+ G + K E RA Sbjct: 63 GRVLF---DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119 Query: 424 A----FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 G + LSGGQR RV LA+ L V+LLDEP LD + L Sbjct: 120 ELLRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178 Query: 480 AL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 L + V ++HD+ LA ++ G +E Sbjct: 179 WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN-QGRIE 217 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 110 bits (277), Expect = 8e-25 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 41/216 (18%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNGEAW 64 +SK FG +DDI+L + +LGP+G GK+T+LR++AG ++ +GE Sbjct: 10 NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI 69 Query: 65 LATGFT---VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 +G + Q L TV+EN+ G L + K E A+ Sbjct: 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFG-------------LKVRKKLKKAEIKAR 116 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 +++ ++ GL LSGG+++RVAL + L+ P +LLLD Sbjct: 117 VEEALELVGLEGFADR---------------KPHQLSGGQQQRVALARALVPEPKVLLLD 161 Query: 182 EPTNHLDAETIAWMEKYLREYSGA----VLMVTHDR 213 EP + LDA+ M K L+E + VTHD+ Sbjct: 162 EPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 Score = 102 bits (256), Expect = 2e-22 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 19/215 (8%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +E + +SKS+ D +D++S + G V ++GP+G GKTTL RM+ G E P SG I + Sbjct: 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64 Query: 377 GETVC---------LSYVDQSRDSLEAEKTVWEDISGGDDIV-KLNGHEINSRAYCSAFN 426 + V QS +L TV E+++ G + KL EI +R A Sbjct: 65 DGEDITDVPPEKRPIGMVFQSY-ALFPHMTVEENVAFGLKVRKKLKKAEIKARV-EEALE 122 Query: 427 FKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDA 480 G + ++ LSGGQ+ RV LA+ L V+LLDEP + LD + L++ Sbjct: 123 LVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 Query: 481 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 V ++HD+ ++ I +G +E Sbjct: 183 QRELGITFVYVTHDQEEALAMSDRIAVMN-DGRIE 216 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 110 bits (278), Expect = 8e-25 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 44/208 (21%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378 E + +S Y R ++D+LS + G IVG++GPNGAGK+TL + L G P SG I + Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-- 58 Query: 379 TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR--------AYCSAFNFKGG 430 G D+ L+ E+ + + Sbjct: 59 -------------------------DGKDLASLSPKELARKIAYVPQALELLGLAHLA-- 91 Query: 431 DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAG 486 + LSGG+R RV LA+ L ++LLDEPT+ LD E L L Sbjct: 92 --DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149 Query: 487 CAVIISHDRMFLDRLATHILAFEGNGHV 514 V++ HD R A ++ + +G + Sbjct: 150 TVVMVLHDLNLAARYADRVILLK-DGRI 176 Score = 68.9 bits (169), Expect = 3e-12 Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 153 NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLM 208 LSGGE++RV L + L P +LLLDEPT+HLD E + + + RE V+M Sbjct: 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153 Query: 209 VTHD 212 V HD Sbjct: 154 VLHD 157 Score = 63.5 bits (155), Expect = 1e-10 Identities = 28/56 (50%), Positives = 38/56 (67%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66 LS +G + VLDD++LS +GILGPNGAGKST+L+ +AG+ K +GE L Sbjct: 4 NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 110 bits (276), Expect = 1e-24 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 53/229 (23%) Query: 8 HMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 + +SK++G L D+NL + I+GP+G+GKST+L ++ G+DK +GE Sbjct: 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 Query: 64 WLA------------TGF---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM 108 + +G++ Q L TV EN+ EL Sbjct: 63 LINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV---------------ELP 107 Query: 109 MNYSEKTEEEIA-KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167 + + K+ +++++ GL D + LSGG+++RVA+ Sbjct: 108 LLIAGKSAGRRKRAAEELLEVLGLEDR--------------LLKKKPSELSGGQQQRVAI 153 Query: 168 CKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212 + L+++P ++L DEPT +LD++T + + + +E ++MVTHD Sbjct: 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 Score = 102 bits (256), Expect = 2e-22 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 24/202 (11%) Query: 317 VIEAKGISKSYNDRL----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +IE K +SK Y + +++ ++ G V ++GP+G+GK+TL +L G + P SG Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 Query: 373 TIHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINS 418 + + ++ L +K TV E++ I + Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120 Query: 419 RA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 A + +++ LSGGQ+ RV +A+ L + +IL DEPT +LD++T Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180 Query: 477 LEDALENFA---GCAVII-SHD 494 + + L G +I+ +HD Sbjct: 181 VLELLRELNKERGKTIIMVTHD 202 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 109 bits (275), Expect = 2e-24 Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 47/254 (18%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AW 64 VL+D++L P K+ I+G +G+GKST+L+++ G+ K G A Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 L VGY+ Q+P L S +++ENI G E++ ++A + Sbjct: 545 LRRQ--VGYVLQDPFL-FSGSIRENIALG-----NPEATDEEIIEAA------QLAGAHE 590 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 I++ + +T V G +LSGG+++R+AL + LLS P +LLLDE T Sbjct: 591 FIENLPM-GYDTPV------------GEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 Query: 185 NHLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYL 242 + LD ET A + + L + V+++ H + + + I+ +D+GK I QG++ L Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSA-DRIIVLDQGK-IVEQGSHEELL 695 Query: 243 QMK---AKRMAQEN 253 A+ Q+ Sbjct: 696 AQGGLYARLYQQQE 709 Score = 104 bits (262), Expect = 5e-23 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 26/227 (11%) Query: 318 IEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE + +S Y D ++++LS ++PPG V ++G +G+GK+TL ++L G P G I Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 Query: 376 VGET-----------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCS 423 + + YV Q D ++ E+I+ G+ ++ A Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQ--DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589 Query: 424 AF--NFKGGDQ---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478 F N G + +LSGGQR R+ LA+ L S ++LLDE T+ LD ET + + Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649 Query: 479 DALENFAGCA--VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 L +II+H R+ R A I+ + VE +G+ EE Sbjct: 650 QNLLQILQGRTVIIIAH-RLSTIRSADRIIVLDQGKIVE--QGSHEE 693 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 109 bits (273), Expect = 2e-24 Identities = 60/195 (30%), Positives = 85/195 (43%), Gaps = 43/195 (22%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378 E + +S Y R +DN+S L G IV ++GPNG+GK+TL R + G P SG I + Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI-- 58 Query: 379 TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGS 438 G DI KL E+ R + Sbjct: 59 -------------------------DGKDIAKLPLEELRRRIGY-------------VPQ 80 Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-ISHDR 495 LSGGQR RV LA+ L +++LLDEPT+ LD + L + L A G VI ++HD Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 Query: 496 MFLDRLATHILAFEG 510 + A ++ + Sbjct: 141 ELAELAADRVIVLKD 155 Score = 76.9 bits (189), Expect = 1e-14 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVT 210 + LSGG+++RVAL + LL +PDLLLLDEPT+ LD + + + LRE + V++VT Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137 Query: 211 HDRYFLDNVTNWILEVDRGK 230 HD + + ++ + GK Sbjct: 138 HDPELAELAADRVIVLKDGK 157 Score = 61.5 bits (149), Expect = 6e-10 Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 LS +G + LD+++L+ + ++GPNG+GKST+LR +AG+ K +GE + Sbjct: 4 NLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 108 bits (271), Expect = 5e-24 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 16/223 (7%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E K + KS+ ++ +++ + G V ++GP+G GK+TL RM+ G E P SG I + Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63 Query: 378 ETVC---------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK 428 ++ V Q+ +L TV+E+I+ G + + EI+ R A Sbjct: 64 GRDVTDLPPEKRGIAMVFQN-YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLG 122 Query: 429 -GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALEN 483 ++ LSGGQR RV LA+ L V LLDEP ++LD S ++ E Sbjct: 123 LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182 Query: 484 FAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 + ++HD++ LA I+ +G ++ E YE+ Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMN-DGRIQQVGTPLELYER 224 Score = 98.8 bits (246), Expect = 4e-21 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 42/233 (18%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----A 66 + K FGS +VL D+NL + +LGP+G GKST+LR++AG+++ +GE + Sbjct: 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 Query: 67 TGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 T + + Q L TV ENI G+ K + + + ++ + + Sbjct: 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL--KLRGVPK---------AEIDKRVKE 116 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 + ++ + L + P LSGG+++RVAL + L+ P + LLD Sbjct: 117 VAKLLGLEHLLN------------RKPL------QLSGGQRQRVALARALVRKPKVFLLD 158 Query: 182 EPTNHLDAETIAWMEKYL----REYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 EP ++LDA+ M + + VTHD+ + + I+ ++ G+ Sbjct: 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGR 211 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 106 bits (267), Expect = 1e-23 Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 45/243 (18%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT------ 70 G K L D++L ++ ++GPNG+GKST+L+++ G+ K +GE + T Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74 Query: 71 ------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 VG + Q P L + + VA + N EE ++ + Sbjct: 75 LELRQKVGLVFQNPDDQL---FGPTVEDEVAF----------GLENLGLPREEIEERVAE 121 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 ++ GL +L +LSGG+K+RVA+ +L P++LLLDEPT Sbjct: 122 ALELVGLEELLDR---------------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 Query: 185 NHLDAETIAWMEKYLREY----SGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA 240 LD + + + L++ +++VTHD + + ++ +D GK I G+ + Sbjct: 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK-ILADGDPAE 225 Query: 241 YLQ 243 Sbjct: 226 IFN 228 Score = 103 bits (259), Expect = 9e-23 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 317 VIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IEA+ +S Y R + ++S ++ G V +IGPNG+GK+TL ++L G P SG + Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62 Query: 376 VGETVC------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--Y 421 V + V Q+ D TV ++++ G + + L EI R Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122 Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSAL 477 + +LSGGQ+ RV +A +L G ++LLDEPT LD E L L Sbjct: 123 LELVGL-EELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181 Query: 478 EDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528 + E +I++HD + A ++ + + +G+ E D Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL--ADGDPAEIFNDA 230 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 105 bits (264), Expect = 3e-23 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 45/228 (19%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-----AWLATGF-- 69 ++LDD++L Y I + G NGAGK+T+ +I+AG+ KE +G + Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR 70 Query: 70 -TVGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 ++GY+ Q+ L + +V+E ++ G ++ + + + ++ Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG------------------LKELDAGNEQAETVLK 112 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 L+ L+ + SLSGG+K+R+A+ LLS DLL+ DEPT+ L Sbjct: 113 DLDLYALKER---------------HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 Query: 188 DAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGKGI 232 D + + + + +RE + AV+++THD FL V + +L + G + Sbjct: 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 Score = 100 bits (251), Expect = 8e-22 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 15/205 (7%) Query: 319 EAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + IS SY ++D+LS L G I+ + G NGAGKTTL ++L G SG+I + Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60 Query: 378 ETV--------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 + YV Q D +V E++ G + + + Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--ETVLKDLDLYA 118 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--- 486 ++ + SLSGGQ+ R+ +A L SG ++++ DEPT+ LD + + + + + A Sbjct: 119 LKERHPL-SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177 Query: 487 CAVIISHDRMFLDRLATHILAFEGN 511 ++I+HD FL ++ +L Sbjct: 178 AVIVITHDYEFLAKVCDRVLLLANG 202 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 105 bits (263), Expect = 4e-23 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 18/204 (8%) Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++ + ++K+Y + +D+LS + G I G++G NGAGKTT +MLTG+ P SGT + Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 Query: 376 VGET----------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCS 423 + L Y Q D+L E TV E + + L EI Sbjct: 61 INGYSIRTDRKAARQSLGYCPQF-DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119 Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 +R +LSGG + ++ LA L G +V+LLDEPT+ LD + A+ D + Sbjct: 120 VLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178 Query: 484 F-AGCAVII-SHDRMFLDRLATHI 505 G ++I+ +H + L I Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRI 202 Score = 91.0 bits (226), Expect = 7e-19 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 53/224 (23%) Query: 8 HMAGLSKVFGS--KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 + L+K + K +DD++L+ Y G+LG NGAGK+T L+++ G + +G A++ Sbjct: 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 Query: 66 ----------ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMN 110 A ++GY PQ L TV+E++ ++G+ + Sbjct: 62 NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEI----------- 110 Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 +EE+ L ++ + +LSGG KR+++L Sbjct: 111 -----KEEVELLLRVLGLTDKANKR------------------ARTLSGGMKRKLSLAIA 147 Query: 171 LLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 L+ P +LLLDEPT+ LD + + + E ++++ TH Sbjct: 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS 191 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 104 bits (262), Expect = 5e-23 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E K +SK Y + +++++S + G IV ++GP+G+GK+TL R + G E PDSG+I + Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437 D+ V++D + L H + + Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFA-------LFPH-------LTVL-------ENIAL 99 Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA---GCAVI-ISH 493 LSGGQ+ RV LA+ L +V+LLDEPT+ LD T + L++ G V+ ++H Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 Query: 494 DRMFLDRLATHILAFE 509 D RLA ++ Sbjct: 160 DLDEAARLADRVVVLR 175 Score = 67.1 bits (164), Expect = 1e-11 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 5/83 (6%) Query: 153 NIT-SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVL 207 NI LSGG+++RVAL + L PD+LLLDEPT+ LD T + L+ + V+ Sbjct: 96 NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155 Query: 208 MVTHDRYFLDNVTNWILEVDRGK 230 +VTHD + + ++ + GK Sbjct: 156 LVTHDLDEAARLADRVVVLRDGK 178 Score = 67.1 bits (164), Expect = 1e-11 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 13/99 (13%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNG 61 + +SK +G K VL+D++L+ + +LGP+G+GKST+LR +AG+++ +G Sbjct: 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61 Query: 62 EAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEG 93 E +G + Q+ L TV ENI G Sbjct: 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 104 bits (261), Expect = 7e-23 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 25/220 (11%) Query: 318 IEAKGISKSYND----RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 IE K +SK+Y + +S + G V ++GP+G+GK+TL +L G + P SG Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 Query: 374 IHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSR 419 + V T ++ + T E++ + + E R Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120 Query: 420 AYCSAFNFKGGDQQ-QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----L 474 A GD+ LSGGQ+ RV +A+ L + +IL DEPT +LD+ET + Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180 Query: 475 SALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHV 514 L + + V+++HD L A I+ +G + Sbjct: 181 ELLRELNKEAGTTIVVVTHD-PELAEYADRIIELR-DGKI 218 Score = 103 bits (259), Expect = 1e-22 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 54/227 (23%) Query: 11 GLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66 LSK +G L ++LS + I+GP+G+GKST+L I+ G+D+ +GE + Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64 Query: 67 ------------TGF---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111 F +G++ Q L T EN+ EL + Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV---------------ELPLLL 109 Query: 112 SEKTEEEI-AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 + ++E + +++++ GL D H P+ LSGG+++RVA+ + Sbjct: 110 AGVPKKERRERAEELLERVGLGDRLN---------HYPS------ELSGGQQQRVAIARA 154 Query: 171 LLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDR 213 L + P ++L DEPT +LD+ET + + + +E +++VTHD Sbjct: 155 LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 104 bits (260), Expect = 1e-22 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 43/235 (18%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 LSK FG K+VL I+LS + I+GP+G+GKST+LR + G+++ +G + Sbjct: 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 Query: 71 ------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 VG + Q+ L TV EN+ + E Sbjct: 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-------------PVKVKKLSKAEA 113 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 K ++++ GL D PA LSGG+++RVA+ + L P ++ Sbjct: 114 REKALELLEKVGLADKAD---------AYPA------QLSGGQQQRVAIARALAMDPKVM 158 Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGK 230 L DEPT+ LD E + + +++ + +++VTH+ F V + ++ +D+GK Sbjct: 159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK 213 Score = 94.0 bits (234), Expect = 9e-20 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 18/223 (8%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +IE K +SKS+ D+ ++ +S + G +V +IGP+G+GK+TL R L G E PDSG+I V Sbjct: 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 Query: 377 GETVCLSYVDQSRD-----------SLEAEKTVWEDISGGDDIV-KLNGHEINSRAYCSA 424 D + +L TV E+++ V KL+ E +A Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL 121 Query: 425 FNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 D+ LSGGQ+ RV +A+ L V+L DEPT+ LD E + + D +++ Sbjct: 122 EKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 Query: 484 FAG---CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 A +I++H+ F +A ++ + +E EG EE Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE--EGPPEE 222 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 103 bits (258), Expect = 2e-22 Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 65/272 (23%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 LSK +G +KV++ ++LS +G+LGPNGAGK+T ++ G+ K +G+ L Sbjct: 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI 64 Query: 71 ------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 +GYLPQE + TV+ENI+ A+L+ EK EE Sbjct: 65 TKLPMHKRARLGIGYLPQEASIFRKLTVEENIL-------AVLEIRGLSKKEREEKLEEL 117 Query: 119 IA--KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 + + + SK SLSGGE+RRV + + L ++P Sbjct: 118 LEEFHITHLRKSKAS------------------------SLSGGERRRVEIARALATNPK 153 Query: 177 LLLLDEPTNHLDAETIAWME---KYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIP 233 LLLDEP +D + ++ K L++ VL+ H NV + DR Sbjct: 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDH------NVRETLSITDR----- 202 Query: 234 YQGNYSAYLQMKAKRMAQENREEISRQKAIER 265 AY+ + K +A+ EEI+ + + + Sbjct: 203 ------AYIIYEGKVLAEGTPEEIAANELVRK 228 Score = 92.9 bits (231), Expect = 2e-19 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 16/162 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + A+ +SK Y R +++ +S + G IVG++GPNGAGKTT F M+ G PDSG I + Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60 Query: 378 ET------------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR--AYCS 423 + + Y+ Q S+ + TV E+I +I L+ E + Sbjct: 61 GQDITKLPMHKRARLGIGYLPQ-EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE 119 Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465 F+ ++ + SLSGG+R RV +A+ L + +LLDEP Sbjct: 120 EFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 102 bits (257), Expect = 2e-22 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 49/223 (21%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY-----NGEAWL 65 L+ +G K L DI+L ++GP+G GKST+LR++ ++ GE L Sbjct: 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 Query: 66 -------------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112 VG + Q+P ++ +N+ G+ Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVFQKPNP-FPGSIYDNVAYGLRLHG-------------- 109 Query: 113 EKTEEEIAKL-QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 K +EE+ + ++ + LWD EV D L+ LSGG+++R+ L + L Sbjct: 110 IKLKEELDERVEEALRKAALWD---EV----------KDRLHALGLSGGQQQRLCLARAL 156 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 + P++LLLDEPT+ LD + A +E+ + E +++VTH+ Sbjct: 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199 Score = 98.3 bits (245), Expect = 5e-21 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 32/226 (14%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DESPDSG 372 IE + ++ Y D+ + ++S +P G I +IGP+G GK+TL R+L +PD G Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60 Query: 373 TIHV-GETVCLSYVD------------QSRDSLEAEKTVWEDISGGDDIVKLNG------ 413 + + G+ + VD Q + +++++++ G ++L+G Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF--PGSIYDNVAYG---LRLHGIKLKEE 115 Query: 414 -HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 E A A + + LSGGQ+ R+ LA+ L + V+LLDEPT+ LD Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175 Query: 473 TLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEW 516 + + +E+ + VI++H+ R+A VE+ Sbjct: 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 102 bits (255), Expect = 3e-22 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 30/235 (12%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IE +G++KS+ DR+++D + +P G I+ ++G +G+GK+TL R++ G PD G I Sbjct: 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 Query: 376 V-GETVC-LSYVDQSR---------------DSLEAEKTVWEDIS-GGDDIVKLNGHEIN 417 + GE + LS + SL TV+E+++ + KL I Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL----TVFENVAFPLREHTKLPESLIR 122 Query: 418 SRAY--CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 +G LSGG R RV LA+ + ++ LDEPT+ LD + Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182 Query: 476 ALEDAL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 +++ + + ++++HD L +A + A +G V EG EE Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRV-AVLADGKVIA-EGTPEELLA 235 Score = 101 bits (253), Expect = 6e-22 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 50/255 (19%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65 + G++K FG + +LD ++L + ILG +G+GKST+LR++ G+ + GE + Sbjct: 11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70 Query: 66 -----------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 +G L Q+ L S TV EN+ A + +++ Sbjct: 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV--------AF------PLREHTKL 116 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNI--TSLSGGEKRRVALCKLLL 172 E I +L V + +E + ++ + LSGG ++RVAL + + Sbjct: 117 PESLIREL---------------VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 Query: 173 SSPDLLLLDEPTNHLD---AETIAWMEKYLREYSGA-VLMVTHDRYFLDNVTNWILEVDR 228 P+LL LDEPT+ LD A I + + L + G V+MVTHD L + + + + Sbjct: 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221 Query: 229 GKGIPYQGNYSAYLQ 243 GK + +G L Sbjct: 222 GK-VIAEGTPEELLA 235 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 101 bits (254), Expect = 5e-22 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 42/202 (20%) Query: 318 IEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE K +S SY R ++ ++S + PG V ++GP+G+GK+TL ++L P SG I Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCS--AFNFKGGDQ 432 + G D+ L+ + AY F F G Sbjct: 61 I---------------------------DGVDLRDLDLESLRKNIAYVPQDPFLFSG--- 90 Query: 433 QQRIGS--LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGC--A 488 I LSGGQR R+ +A+ L +++LDE T+ LD ET + + +AL A Sbjct: 91 --TIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTV 148 Query: 489 VIISHDRMFLDRLATHILAFEG 510 ++I+H R+ R A I+ + Sbjct: 149 IVIAH-RLSTIRDADRIIVLDD 169 Score = 66.2 bits (162), Expect = 2e-11 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 5/80 (6%) Query: 153 NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVT 210 NI LSGG+++R+A+ + LL P +L+LDE T+ LD ET A + + LR + V+++ Sbjct: 95 NI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152 Query: 211 HDRYFLDNVTNWILEVDRGK 230 H + + + I+ +D G+ Sbjct: 153 HRLSTIRDA-DRIIVLDDGR 171 Score = 64.7 bits (158), Expect = 6e-11 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 16/90 (17%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------A 63 K VL D++L+ P K+ I+GP+G+GKST+L+++ + +GE Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEG 93 L + Y+PQ+P L S T++ENI+ G Sbjct: 73 SLRK--NIAYVPQDPFL-FSGTIRENILSG 99 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 101 bits (252), Expect = 7e-22 Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 28/202 (13%) Query: 317 VIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +I A ++K + D +D +SF + PG + G++GPNGAGKTT RML G PD+G Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 Query: 373 TIHVGETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIVKLNGHEIN 417 V D ++ EA + T E++ + L G E+ Sbjct: 61 FATV------DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT 114 Query: 418 SRAYCSAFNFKGGD-QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 +R A + +R+G S G R +V +A+ L V+LLDEPT LD A Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174 Query: 477 LEDALENF--AGCAVIISHDRM 496 L + + G ++ S M Sbjct: 175 LREFIRQLRALGKCILFSTHIM 196 Score = 72.6 bits (178), Expect = 3e-13 Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 58/227 (25%) Query: 8 HMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 L+K F K +D ++ + P G+LGPNGAGK+T LR++AG+ + G A Sbjct: 3 TADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62 Query: 64 WLATGFTVGYLPQEPQLDLS-----------KTVKENI-----IEGVAHKQAILDRYNEL 107 + GF V P E + L T +EN+ + G+ + R EL Sbjct: 63 TVD-GFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK-GDELTARLEEL 120 Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167 D + + L D S G +++VA+ Sbjct: 121 A---------------DRLGMEELLDRRVG------------------GFSTGMRQKVAI 147 Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTH 211 + L+ P +LLLDEPT LD + +++R+ +L TH Sbjct: 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 100 bits (251), Expect = 9e-22 Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 36/238 (15%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 GL+K FG LDD++ S P G++GPNGAGK+T+ +++G + +G G Sbjct: 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD-GED 63 Query: 71 VGYLP-------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 + LP Q P+L TV EN++ + L+ + E Sbjct: 64 ITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART----GSGLLLARARREERE 119 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 + +++++ GL DL PA LS G++RR+ + + L + P L Sbjct: 120 ARERAEELLERVGLADL----------ADRPAG-----ELSYGQQRRLEIARALATDPKL 164 Query: 178 LLLDEPT---NHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232 LLLDEP N + E +A + + LRE VL+V HD + ++ + + +D+G+ I Sbjct: 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 Score = 99.0 bits (247), Expect = 3e-21 Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 29/237 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 +E +G++K + + +D++SF + PG I G+IGPNGAGKTTLF +++G P SG++ Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60 Query: 377 GETVCLSYVDQ------SR----DSLEAEKTVWEDI----------SGGDDIVKLNGHEI 416 GE + + R L E TV E++ + E Sbjct: 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120 Query: 417 NSRAYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT---NDLDT 471 RA G + G LS GQ+ R+ +A+ L + ++LLDEP N +T Sbjct: 121 RERAE-ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179 Query: 472 ETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528 E L+ L L +++ HD + LA + + G V EG +E + Sbjct: 180 EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLD-QGRV-IAEGTPDEVRNNP 234 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 99.2 bits (247), Expect = 2e-21 Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 40/239 (16%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG--------- 68 K L + NL+ K+ ILG +G+GKST+L+++AG G L Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409 Query: 69 --FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 T+ L Q L S T+++N+ + N EE A LQ + Sbjct: 410 LRETISVLTQRVHL-FSGTLRDNL----------------RLANPDASDEELWAALQQV- 451 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 LE ++ A + L+ LSGGE+RR+AL + LL L LLDEPT Sbjct: 452 ------GLEKLLESAPDGLNTWLGEGGRR-LSGGERRRLALARALLHDAPLWLLDEPTEG 504 Query: 187 LDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243 LD T + L E++ +LMVTH L+ + + I+ +D GK I +G ++ L Sbjct: 505 LDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGK-IIEEGTHAELLA 561 Score = 83.4 bits (206), Expect = 1e-16 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 34/233 (14%) Query: 316 VVIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 +E + +S +Y + N + L G V ++G +G+GK+TL ++L G P G+ Sbjct: 335 QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394 Query: 374 IHVGETVCLSYVDQS-------------------RDSLEAEKTVWEDISGGD--DIVKLN 412 I + S +Q+ RD+L D S + ++ Sbjct: 395 ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQV 451 Query: 413 GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 G E + N G+ +R LSGG+R R+ LA+ L + LLDEPT LD Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRR---LSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508 Query: 473 TLSALEDALENFAGCA--VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 T + L A ++++H L+R+ + NG + EG E Sbjct: 509 TERQVLALLFEHAEGKTLLMVTHRLRGLERMDR--IIVLDNGKII-EEGTHAE 558 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 99.1 bits (247), Expect = 2e-21 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 29/205 (14%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 L+K +G K+VLDDI+L G LGPNGAGK+T ++I+ G+ K +GE Sbjct: 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI------- 57 Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130 K+ ++N IE + A+++ N + + + I K Sbjct: 58 ---------TFDGKSYQKN-IEALRRIGALIE-APGFYPNLTARENLRLLARLLGIRKK- 105 Query: 131 LWDLETEVQVAIESLHCPADG-LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 + ++ + + S G K+R+ + LL +PDLL+LDEPTN LD Sbjct: 106 ------RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 Query: 190 ETIAWMEKY---LREYSGAVLMVTH 211 + I + + LR+ VL+ +H Sbjct: 160 DGIKELRELILSLRDQGITVLISSH 184 Score = 96.0 bits (239), Expect = 2e-20 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 8/196 (4%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 ++ ++K+Y + ++D++S + G I G +GPNGAGKTT +++ G PDSG I Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60 Query: 377 -GETVCLSYVDQSRDSLEAEKTVWEDISGGDDI-VKLNGHEINSRAYCSAFNFKG--GDQ 432 + +L + +++ +++ + I + + G Sbjct: 61 GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA 120 Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI 490 ++++ S G + R+ +A L ++++LDEPTN LD + + L + + + G V+ Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180 Query: 491 I-SHDRMFLDRLATHI 505 I SH + ++A I Sbjct: 181 ISSHLLSEIQKVADRI 196 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 97.9 bits (244), Expect = 6e-21 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 26/230 (11%) Query: 317 VIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +IE K +SK + D + ++S +P G I G+IG +GAGK+TL R + G E P SG Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60 Query: 373 TIHV-GETVCLSYVDQSRD------------SLEAEKTVWEDISGGDDIVKLNGHEINSR 419 ++ V G + L + R +L + +TV+E+++ +I + EI R Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120 Query: 420 AYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---- 473 G LSGGQ+ RV +A+ L + V+L DE T+ LD ET Sbjct: 121 VL-ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179 Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 L+ L D V+I+H+ + R+ + E VE EG EE Sbjct: 180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE--EGTVEE 227 Score = 89.4 bits (222), Expect = 2e-18 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 61/250 (24%) Query: 8 HMAGLSKVFGSK----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 + +SKVFG L D++LS GI+G +GAGKST++R + G+++ +G Sbjct: 3 ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV 62 Query: 64 WLA----TGFT----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRY 104 + T + +G + Q L S+TV EN+ I GV K I +R Sbjct: 63 LVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP-KAEIEERV 121 Query: 105 NELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164 EL+ E+ L+D D+ PA LSGG+K+R Sbjct: 122 LELL---------ELVGLEDKADAY------------------PA------QLSGGQKQR 148 Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDRYFLDNVT 220 V + + L ++P +LL DE T+ LD ET +A + RE ++++TH+ + + Sbjct: 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC 208 Query: 221 NWILEVDRGK 230 + + +++G+ Sbjct: 209 DRVAVMEKGE 218 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 97.6 bits (243), Expect = 7e-21 Identities = 120/555 (21%), Positives = 194/555 (34%), Gaps = 124/555 (22%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKS----TILRIMA-------GIDKEYNGEAWL 65 G+ + + I+ + ++G +G+GKS +IL ++ ++GE L Sbjct: 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 Query: 66 AT---------GFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 A G +G + QEP L+ T+ + + E + + + Sbjct: 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRA----------A 130 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNI--TSLSGGEKRRVALCKLLL 172 +L + V I P L+ LSGG+++RV + L Sbjct: 131 ARARALELLE--------------LVGIPE---PEKRLDAYPHELSGGQRQRVMIAMALA 173 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHD----RYFLDNVTNWIL 224 + PDLL+ DEPT LD A + L+ E A+L +THD R F D V Sbjct: 174 NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV----- 228 Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKAR 284 Y+ + + E + R + + P Sbjct: 229 ----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL--- 269 Query: 285 IRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLL-IDNLSFKLPPG 343 P +A +++ + L G + D L +D +S L G Sbjct: 270 ---------------PEDAPVLL-EVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG 313 Query: 344 GIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR-------------- 389 +G++G +G+GK+TL L G+ + + R Sbjct: 314 QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373 Query: 390 DSLEAEKTVWEDISGGDDI--VKLNGHEINSRAYCSAFNFKGGDQQQRI---GSLSGGQR 444 SL TV + I G + KL+ E + R A G D R SGGQR Sbjct: 374 GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRV-IEALEEVGLDPATRNRYPHEFSGGQR 432 Query: 445 GRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHDRMFLDR 500 R+ +A+ L +ILLDEPT+ LD + L L D + + ISHD + Sbjct: 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRA 492 Query: 501 LATHILAFEGNGHVE 515 L ++ VE Sbjct: 493 LCHRVIVMRDGKIVE 507 Score = 57.5 bits (139), Expect = 9e-09 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 49/240 (20%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE-----YNGEAWLA 66 L + + +D I+L+ +G++G +G+GKST+ + + ++G+ Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG 352 Query: 67 TGFTVGYLP---------QEPQLDLS--KTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115 P Q+P LS TV + I EG+ R +E ++ +E+ Sbjct: 353 LSRK-EMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL--------RVHEPKLSAAERD 403 Query: 116 EEEIAKLQDI-IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 + I L+++ +D E SGG+++R+A+ + L+ Sbjct: 404 QRVIEALEEVGLDPATRNRYPHE-------------------FSGGQRQRIAIARALILK 444 Query: 175 PDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 P+L+LLDEPT+ LD A+ + + +++ + L ++HD + + + ++ + GK Sbjct: 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 Score = 49.1 bits (117), Expect = 3e-06 Identities = 44/224 (19%), Positives = 75/224 (33%), Gaps = 52/224 (23%) Query: 322 GISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT----TLFRMLTGDESPDSGTIHVG 377 + + +SF + G + ++G +G+GK+ ++ +L P H Sbjct: 15 AFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PSPAAAHPS 69 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGD-------DIVKLNG-HEINSR---AYCSAFN 426 ++ D L A + + G + LN H I + Sbjct: 70 GSILF----DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG 125 Query: 427 FKGGDQQQRIGS--------------------LSGGQRGRVHLAKILKSGGNVILLDEPT 466 + R LSGGQR RV +A L + ++++ DEPT Sbjct: 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPT 185 Query: 467 NDLDTET----LSALEDALENFAGCAVIISHD----RMFLDRLA 502 LD L L++ + I+HD R F DR+ Sbjct: 186 TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY 229 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 97.1 bits (242), Expect = 1e-20 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 45/242 (18%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNG 61 + L+K +G K+ LD ++L+ G+LGPNGAGK+T++RI+A + +G Sbjct: 2 QLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 Query: 62 EAWLATGF----TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 + L +GYLPQE + + TV+E ++Y Sbjct: 61 QDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE-------------------FLDY------ 95 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHC-PADGLNITSLSGGEKRRVALCKLLLSSPD 176 IA L+ I +++ V +E ++ I SLSGG +RRV + + L+ P Sbjct: 96 -IAWLKGIPSK----EVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 +L++DEPT LD E L E V++ TH ++++ N + +++GK + + Sbjct: 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGK-LVF 209 Query: 235 QG 236 +G Sbjct: 210 EG 211 Score = 93.3 bits (232), Expect = 2e-19 Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 28/203 (13%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 ++ + ++K Y + +D +S L PG + G++GPNGAGKTTL R+L P SGTI + Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 Query: 378 ETVCLSYVDQSRDSL---------EAEKTVWEDISGGDDIVKLNG-HEINSRAYC----S 423 L + R + TV E + D I L G +A Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFL---DYIAWLKGIPSKEVKARVDEVLE 116 Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 N G +++IGSLSGG R RV +A+ L +++++DEPT LD E + L Sbjct: 117 LVNL-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175 Query: 484 FAGCAVIISHDRMFLDRLATHIL 506 ++I L+THI+ Sbjct: 176 LGEDRIVI---------LSTHIV 189 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 96.7 bits (241), Expect = 1e-20 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 20/215 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE K + KS+ D ++ + + G +V +IGP+G+GK+TL R + E PDSGTI + Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 Query: 378 ETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIV-KLNGHEINSRAYCS 423 + V Q + L TV E+I+ V ++ E RA Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFN-LFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119 Query: 424 AFNFKGGDQ-QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482 D+ LSGGQ+ RV +A+ L V+L DEPT+ LD E + + D ++ Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179 Query: 483 NFA--GCA-VIISHDRMFLDRLATHILAFEGNGHV 514 + A G V+++H+ F +A ++ + G + Sbjct: 180 DLAEEGMTMVVVTHEMGFAREVADRVIFMDD-GRI 213 Score = 91.7 bits (228), Expect = 4e-19 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 44/239 (18%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE----- 62 + L K FG VL I+L+ + I+GP+G+GKST+LR + +++ +G Sbjct: 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG 61 Query: 63 --------AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 VG + Q+ L TV ENI + Sbjct: 62 LKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-------------PIKVKGMS 108 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 E + ++++ GL D PA LSGG+++RVA+ + L + Sbjct: 109 KAEAEERALELLEKVGLADKAD---------AYPA------QLSGGQQQRVAIARALAMN 153 Query: 175 PDLLLLDEPTNHLDAETIAWMEKYLRE--YSG-AVLMVTHDRYFLDNVTNWILEVDRGK 230 P ++L DEPT+ LD E + + +++ G +++VTH+ F V + ++ +D G+ Sbjct: 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 96.5 bits (240), Expect = 1e-20 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 50/223 (22%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +I A+ +S S R L+D +S L PG ++ ++GPNGAGK+TL + L+G+ SPDSG + + Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60 Query: 377 GETVCLSYVDQSRDSLEAEK------------------TVWEDI-------SGGDDIVKL 411 +S E+ TV E + G + + Sbjct: 61 NG--------VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEED 112 Query: 412 NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKIL------KSGGNVILLDEP 465 + A G D + LSGG++ RV LA++L G + LDEP Sbjct: 113 ERIAAQALAATDLSGLAGRDYRT----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEP 168 Query: 466 TNDLDTETLSALEDALENFA--GCAVI-ISHD----RMFLDRL 501 T+ LD A G AV+ + HD + DR+ Sbjct: 169 TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRI 211 Score = 79.9 bits (197), Expect = 2e-15 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 38/223 (17%) Query: 2 ARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG 61 A Y +AG +++LD ++L P + ILGPNGAGKST+L+ ++G E + Sbjct: 4 AENLSYSLAG-------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG---ELSP 53 Query: 62 EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 ++ T V L P +L A +A+L + + L + T +E+ + Sbjct: 54 DSGEVTLNGVP-LNSWPPEEL------------ARHRAVLPQNSSLAFPF---TVQEVVQ 97 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGL---NITSLSGGEKRRVALCKLL------L 172 + I G E E A GL + +LSGGE++RV L ++L + Sbjct: 98 MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 Query: 173 SSPDLLLLDEPTNHLD---AETIAWMEKYLREYSGAVLMVTHD 212 S L LDEPT+ LD + + L GAVL V HD Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 95.9 bits (239), Expect = 3e-20 Identities = 70/238 (29%), Positives = 103/238 (43%), Gaps = 46/238 (19%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65 GL+K FG + VL ++L + I+GP+G+GKST+LR++ G+ + +GE + Sbjct: 5 GLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI 64 Query: 66 ---------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTE 116 +G L Q L S TV EN+ A R + SE+ Sbjct: 65 SGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV--------AFPLREHT---RLSEEEI 113 Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 EI + +++ GL E PA+ LSGG K+RVAL + L P+ Sbjct: 114 REIVLEK--LEAVGLRGAEDLY---------PAE------LSGGMKKRVALARALALDPE 156 Query: 177 LLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 LLL DEPT LD + +E +MVTHD + + I + GK Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 Score = 95.2 bits (237), Expect = 4e-20 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 29/229 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 IE +G++KS+ R ++ + + G I+ +IGP+G+GK+TL R++ G PDSG + + Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60 Query: 377 GETVCLSYVDQSRDSLEAEKTVW----------EDISGGDDI-------VKLNGHEINSR 419 GE + S L + + ++ +++ +L+ EI Sbjct: 61 GEDIS----GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI 116 Query: 420 A-YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478 G + LSGG + RV LA+ L ++L DEPT LD ++ Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176 Query: 479 DAL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 D + + +++++HD +A I A +G + EG EE Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRI-AVLYDGKIVA-EGTPEE 223 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 95.6 bits (238), Expect = 3e-20 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 59/270 (21%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 L+K + +KV++D++L +G+LGPNGAGK+T ++ G+ + +G+ L Sbjct: 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI 68 Query: 67 TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 T +GYLPQE + TV++NI+ A+L+ + K E Sbjct: 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIM-------AVLE-----IREKDLKKAER 116 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 +L +++ + L A SLSGGE+RRV + + L ++P + Sbjct: 117 KEELDALLEEFHITHLR----------DSKAY-----SLSGGERRRVEIARALAANPKFI 161 Query: 179 LLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQ 235 LLDEP +D + +++ +L++ VL+ H NV + DR Sbjct: 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDH------NVRETLDICDR------- 208 Query: 236 GNYSAYLQMKAKRMAQENREEISRQKAIER 265 AY+ K +A+ + EEI + + R Sbjct: 209 ----AYIISDGKVLAEGSPEEIVNNEDVRR 234 Score = 90.6 bits (225), Expect = 9e-19 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 18/171 (10%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI- 374 + A+ ++KSY R +++++S ++ G IVG++GPNGAGKTT F M+ G PDSG I Sbjct: 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL 62 Query: 375 -----------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 H + + Y+ Q S+ + TV ++I +I + + + + Sbjct: 63 LDDEDITKLPMHKRARLGIGYLPQ-EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD 121 Query: 424 A----FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 A F+ + + SLSGG+R RV +A+ L + ILLDEP +D Sbjct: 122 ALLEEFHITH-LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 95.3 bits (237), Expect = 4e-20 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 56/244 (22%) Query: 11 GLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL- 65 LS V+G K L++++L +GI+G +G+GKST+ R++AG++K +G L Sbjct: 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 Query: 66 -----------ATGFTVGYLPQEPQLDL--SKTVKENIIEGVAHKQAILDRYNELMMNYS 112 A V + Q+P L +TV + E + Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---------------- 111 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKL 170 GL + + ++ + P L+ LSGG+++R+A+ + Sbjct: 112 ----------------HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 Query: 171 LLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEV 226 L+ P LL+LDEPT+ LD A+ + + + +E L ++HD ++++ + I + Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215 Query: 227 DRGK 230 D G+ Sbjct: 216 DNGQ 219 Score = 93.0 bits (231), Expect = 2e-19 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 21/219 (9%) Query: 318 IEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 + + +S Y ++N+S ++ G +G++G +G+GK+TL R+L G E P SG+ Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63 Query: 374 IHV-GETVCLSYVDQSR------------DSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420 I + G+ + ++ SL +TV +S L+ + Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123 Query: 421 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSA 476 +R LSGGQR R+ +A+ L +++LDEPT+ LD + L+ Sbjct: 124 LLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183 Query: 477 LEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 L + + + ISHD ++ + I + VE Sbjct: 184 LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 95.3 bits (237), Expect = 4e-20 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 26/223 (11%) Query: 317 VIEAKGISKSYNDR-----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371 +IE + +SK++ +D++S ++P G I G+IG +GAGK+TL R++ E P S Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60 Query: 372 GTIHVGETVCLSY----VDQSRDS---------LEAEKTVWEDISGGDDIVKLNGHEINS 418 G++ V + + Q R L + +TV+E+++ ++ + EI Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120 Query: 419 RAYCSAFNFKG-GDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET--- 473 R G D+ R LSGGQ+ RV +A+ L + ++L DE T+ LD ET Sbjct: 121 RVA-ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179 Query: 474 -LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 L L+D V+I+H+ + R+ + + G + Sbjct: 180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD-QGRLV 221 Score = 94.2 bits (234), Expect = 8e-20 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 62/251 (24%) Query: 8 HMAGLSKVFGSKK-----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62 + +SK FG LDD++L GI+G +GAGKST+LR++ +++ +G Sbjct: 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS 62 Query: 63 AWLA----TGFT----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDR 103 ++ T + +G + Q L S+TV EN+ + GV K I R Sbjct: 63 VFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP-KAEIKQR 121 Query: 104 YNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR 163 EL+ E+ L D D PA LSGG+K+ Sbjct: 122 VAELL---------ELVGLSDKADRY------------------PA------QLSGGQKQ 148 Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDRYFLDNV 219 RVA+ + L ++P +LL DE T+ LD ET + ++ RE ++++TH+ + + Sbjct: 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI 208 Query: 220 TNWILEVDRGK 230 + + +D+G+ Sbjct: 209 CDRVAVLDQGR 219 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 94.9 bits (236), Expect = 4e-20 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 33/292 (11%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75 + L DIN + ++GP G+GKS++L + G + +G + +V Y+P Sbjct: 531 ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--SVAYVP 588 Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLE 135 Q+P + + TV+ENI+ G +RY++++ + K + EI D Sbjct: 589 QQPWI-QNGTVRENILFG---SPYDEERYDKVIKACALKKDLEILPFGD----------L 634 Query: 136 TEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW- 194 TE+ G +LSGG+K+R++L + + D+ LLD+P + +DA Sbjct: 635 TEI------------GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHI 682 Query: 195 MEKYLREY--SGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQE 252 E+ +R V++VTH FL + + I+ + GK I G Y L+ Sbjct: 683 FEECIRGLLRGKTVILVTHQLQFLPHA-DQIIVLKDGK-IVESGTYEELLKSGGDFAELA 740 Query: 253 NREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQ 304 + EE +++ + S + +S+S + S EE + Q Sbjct: 741 HEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQ 792 Score = 81.8 bits (202), Expect = 4e-16 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 49/263 (18%) Query: 284 RIRSY---EELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYN---DRLLIDNLS 337 R++ + EEL + R P A G IE K S S++ + +++ Sbjct: 492 RLKEFLLSEELDPDSVERSPDEA----------GENAIEIKNGSFSWDSESPEPTLKDIN 541 Query: 338 FKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKT 397 F++ G +V V+GP G+GK++L + G+ SG++ V +V +YV Q T Sbjct: 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSV--AYVPQQPWIQNG--T 597 Query: 398 VWEDISGGDDIVKLNGHEINSRAY------CS----AFNFKGGDQQQRIG----SLSGGQ 443 V E+I L G + Y C+ GD + IG +LSGGQ Sbjct: 598 VRENI--------LFGSPYDEERYDKVIKACALKKDLEILPFGDLTE-IGERGINLSGGQ 648 Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL-EDALENFAG--CAVIISHDRMFLDR 500 + R+ LA+ + ++ LLD+P + +D + E+ + ++++H FL Sbjct: 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH 708 Query: 501 LATHILAFEGNGHVEWFEGNFEE 523 A I+ + +G + G +EE Sbjct: 709 -ADQIIVLK-DGKIVE-SGTYEE 728 Score = 74.9 bits (184), Expect = 5e-14 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 60/237 (25%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW------------ 64 VL I+ + P K+GI+G GAGKS+++ + + + GE Sbjct: 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210 Query: 65 -LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI---- 119 L + ++ +PQ+P L S TV+ N LD ++ E +++EI Sbjct: 1211 DLRSRLSI--IPQDPVL-FSGTVRFN-----------LDPFD-------EYSDDEIWEAL 1249 Query: 120 --AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 +L+D++ S L++EV G N S G+++ + L + LL + Sbjct: 1250 ERCQLKDVVSSLPG-GLDSEVS---------EGGEN---FSVGQRQLLCLARALLRKSKI 1296 Query: 178 LLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTHDRYFLDNVTNW--ILEVDRGK 230 L+LDE T +D ET A ++K +RE VL + H L+ V + +L +D G+ Sbjct: 1297 LVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR---LNTVMDSDRVLVLDAGR 1350 Score = 66.4 bits (162), Expect = 2e-11 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 52/244 (21%) Query: 284 RIRSYEELVESAAHRHPGNAQIIIPVG-KRLGHVVIEAKGISKSYNDRLLIDNLSFKLPP 342 R+ Y ++ A + P G + E + N L++ +SF + P Sbjct: 1109 RVLEYTDIPSEAPLEIEESR---PPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKP 1165 Query: 343 GGIVGVIGPNGAGKTT----LFRMLTGDESPDSGTI--------HVGETV---CLSYVDQ 387 G VG++G GAGK++ LFR++ P G I +G LS + Q Sbjct: 1166 GEKVGIVGRTGAGKSSLILALFRLV----EPAEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 Query: 388 S--------RDSLE-----AEKTVWE--DISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ 432 R +L+ ++ +WE + D+V ++S +GG+ Sbjct: 1222 DPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVS------EGGE- 1274 Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCAVI- 490 + S GQR + LA+ L +++LDE T +D ET + ++ + E F C V+ Sbjct: 1275 -----NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 Query: 491 ISHD 494 I+H Sbjct: 1330 IAHR 1333 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 95.0 bits (236), Expect = 5e-20 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 IE + +SK Y ++ +D+++ + G + +IGP+G+GKTT +M+ P SG I + Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61 Query: 377 GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY--CSA 424 GE + + YV Q L TV E+I+ ++ + I RA Sbjct: 62 GEDISDLDPVELRRKIGYVIQQ-IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120 Query: 425 FNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-- 481 + R LSGGQ+ RV +A+ L + ++L+DEP LD T L++ + Sbjct: 121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 Query: 482 --ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517 + V ++HD +LA I + G + + Sbjct: 181 LQKELGKTIVFVTHDIDEALKLADRIAVMDA-GEIVQY 217 Score = 71.5 bits (175), Expect = 6e-13 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 52/221 (23%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT- 70 +SK +G+KK +DD+NL+ + ++GP+G+GK+T L+++ + + +GE + Sbjct: 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66 Query: 71 ----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSEKT 115 +GY+ Q+ L TV ENI + G K+ I R +EL+ + Sbjct: 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-KERIKKRADELL----DLV 121 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 + ++ D P + LSGG+++RV + + L + P Sbjct: 122 GLDPSEYAD---------------------RYPHE------LSGGQQQRVGVARALAADP 154 Query: 176 DLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 +LL+DEP LD T +++ + +E ++ VTHD Sbjct: 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 94.4 bits (235), Expect = 6e-20 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 54/237 (22%) Query: 11 GLSKVF----GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66 LS F GS K LDD++ S +G++G +G+GKST+ R + G+ K +G Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65 Query: 67 --------------TGFTVGYLPQEPQ--LDLSKTVKENIIEGVAHKQAILDRYNELMMN 110 + + Q+P L+ T+ E I E + R + + Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL--------RIHGKLSK 117 Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 + E + L + + + + P + LSGG+++RVA+ + Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRY------------PHE------LSGGQRQRVAIARA 159 Query: 171 LLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD----RYFLDNV 219 L +P LL+ DEPT+ LD A+ + ++K E +L +THD D V Sbjct: 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV 216 Score = 81.7 bits (202), Expect = 4e-16 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 33/220 (15%) Query: 317 VIEAKGISKSYNDRL----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 ++E K +S S+ +D++SF + G +G++G +G+GK+TL R + G P SG Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 Query: 373 TIHVGETVCLSYVDQSRD---------------SLEAEKTVWEDISGGDDIVKLNGHEIN 417 +I L + R SL T+ E I+ + ++++G Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA---EPLRIHGKLSK 117 Query: 418 S---RAYCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + G ++ + LSGGQR RV +A+ L +++ DEPT+ LD Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 Query: 471 TET----LSALEDALENFAGCAVIISHDRMFLDRLATHIL 506 L L+ E + I+HD + ++A + Sbjct: 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 94.5 bits (235), Expect = 7e-20 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 52/216 (24%) Query: 18 SKKVLD-DINLSF-YPDAKIGILGPNGAGKSTILRIMAGIDK------EYNGEAWLATGF 69 K++ D + + F + GI G +GAGKST+LR +AG++K NG + Sbjct: 7 EKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK 66 Query: 70 T---------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120 +G + Q+ L V+EN+ G+ K+ DR + Sbjct: 67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISV-------------- 112 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 +++D GL L LSGGEK+RVAL + L + P+LLLL Sbjct: 113 --DELLDLLGLDHLL---------------NRYPAQLSGGEKQRVALARALAAQPELLLL 155 Query: 181 DEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 DEP + LD + L++ + V+ VTHD Sbjct: 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 Score = 83.0 bits (205), Expect = 2e-16 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 22/194 (11%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV--------CLS--- 383 + F L + G+ G +GAGK+TL R + G E PD GTI + TV L Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 Query: 384 ----YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSL 439 V Q +L V E+++ G + I+ + L Sbjct: 75 RKIGLVFQQY-ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-DHLLNRYPAQL 132 Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVIISHDR 495 SGG++ RV LA+ L + ++LLDEP + LD L L+ +N + ++HD Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 Query: 496 MFLDRLATHILAFE 509 + LA I+ E Sbjct: 193 SEAEYLADRIVVME 206 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 94.5 bits (235), Expect = 7e-20 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 36/225 (16%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +I + +SKSY ++++D++S +P GGI +IGPNGAGK+TL M++ DSG I + Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60 Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGG-----------DDIVKLNGH 414 G + LS + Q + + + TV + + G +D +N Sbjct: 61 DGLELTSTPSKELAKKLSILKQE-NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE- 118 Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---- 470 + + + + LSGGQR R +A +L + +LLDEP N+LD Sbjct: 119 ------AIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 Query: 471 TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 + + L + V++ HD F + HI+A + NG V Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK-NGKVV 215 Score = 89.1 bits (221), Expect = 3e-18 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 27/232 (11%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 +SK +G+K VLDD++L I+GPNGAGKST+L +M+ + K+ +GE + Sbjct: 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID----- 61 Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL 131 L+L+ T + + A K +IL + N + T ++ S+G Sbjct: 62 -------GLELTSTPSKEL----AKKLSILKQENHINSRL---TVRDLVGFGRFPYSQGR 107 Query: 132 WDLETEVQV--AIESLHC-PADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 E + AIE LH + LSGG+++R + +L D +LLDEP N+LD Sbjct: 108 LTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 Query: 189 AETIAWMEKYLR----EYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236 + + K LR E +++V HD F ++ I+ + GK + QG Sbjct: 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGK-VVKQG 218 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 93.7 bits (233), Expect = 1e-19 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 45/228 (19%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF--------- 69 LD+++L+ K+ I+G G+GKST+L+++AG+ K +G + L G Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPAD 75 Query: 70 ---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 +GY+PQ+ L T+++NI G +E ++ +E +A + D + Sbjct: 76 LRRNIGYVPQDVTL-FYGTLRDNITLGAPLAD------DERILRAAE-----LAGVTDFV 123 Query: 127 DS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 + GL ++Q+ G LSGG+++ VAL + LL+ P +LLLDEPT Sbjct: 124 NKHPNGL-----DLQI----------GERGRGLSGGQRQAVALARALLNDPPILLLDEPT 168 Query: 185 NHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230 + +D + +++ LR+ G ++++TH R L ++ + I+ +D G+ Sbjct: 169 SAMDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRIIVMDSGR 215 Score = 86.0 bits (213), Expect = 2e-17 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 44/224 (19%) Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE + +S SY + +DN+S + G V +IG G+GK+TL ++L G P SG++ Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62 Query: 376 VGETVC-----------LSYVDQS--------RDSLEAEKTVWED--------ISGGDDI 408 + T + YV Q RD++ + +D ++G D Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122 Query: 409 VKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 V + + + + G++ + LSGGQR V LA+ L + ++LLDEPT+ Sbjct: 123 VNKHPN---------GLDLQIGERGR---GLSGGQRQAVALARALLNDPPILLLDEPTSA 170 Query: 469 LDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEG 510 +D + L++ L G +II+H R L L I+ + Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRIIVMDS 213 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 93.3 bits (232), Expect = 1e-19 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 35/239 (14%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 GLSK FG ++D++L P +G++GPNGAGK+T+ ++ G K +G G Sbjct: 9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR-GRD 67 Query: 71 VGYLP-------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 + LP Q +L TV EN+ G + + E+ Sbjct: 68 ITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR 127 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 E A+ ++++ GL +L PA +LS G++RR+ + + L + P L Sbjct: 128 ERAR--ELLEFVGLGELADR----------PA-----GNLSYGQQRRLEIARALATQPKL 170 Query: 178 LLLDEPT---NHLDAETIAWMEKYLREYSG-AVLMVTHDRYFLDNVTNWILEVDRGKGI 232 LLLDEP N + E +A + + LR+ G +L++ HD + + + I+ ++ G+ I Sbjct: 171 LLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 Score = 86.4 bits (214), Expect = 2e-17 Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 46/249 (18%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++E +G+SK + ++++S ++ PG IVG+IGPNGAGKTTLF ++TG P SGT+ Sbjct: 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV- 61 Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE----------INSRAYCSAF 425 + + L + I+ I +L Sbjct: 62 -------IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLL 114 Query: 426 NFKGGDQQQR----------------------IGSLSGGQRGRVHLAKILKSGGNVILLD 463 +++R G+LS GQ+ R+ +A+ L + ++LLD Sbjct: 115 GRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 Query: 464 EPT---NDLDTETLSALEDALENFAGCAV-IISHDRMFLDRLATHILAFEGNGHVEWFEG 519 EP N +TE L+ L L + G + +I HD + LA I+ G V EG Sbjct: 175 EPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN-YGEV-IAEG 232 Query: 520 NFEEYEKDK 528 EE + Sbjct: 233 TPEEVRNNP 241 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 93.3 bits (232), Expect = 1e-19 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 31/241 (12%) Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IE K +SK+Y + +++ ++ G +V +IGP+GAGK+TL R L G P SG I Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62 Query: 376 V-GETVCLSYVDQSRD------------SLEAEKTVWEDISGGDD--------IVKLNGH 414 G + + R +L +V E++ G + L Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122 Query: 415 EINSRAYCSAFNFKGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 E ++A A G + QR +LSGGQ+ RV +A+ L +IL DEP LD E Sbjct: 123 EDKAQAL-DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181 Query: 473 T----LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528 + + L+D + ++ H + A I+ + G + F+G E + Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK-AGRI-VFDGPASELTDEA 239 Query: 529 L 529 L Sbjct: 240 L 240 Score = 84.9 bits (210), Expect = 6e-17 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 40/221 (18%) Query: 11 GLSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL---- 65 LSK + G + L D+NL + I+GP+GAGKST+LR + G+ +GE Sbjct: 8 NLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67 Query: 66 ATGFT----------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115 T +G + Q+ L +V EN++ G L + + + Sbjct: 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG------RLGYTSTWRSLFGLFS 121 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 +E+ A+ D ++ G+ L+ Q A ++LSGG+++RVA+ + L+ P Sbjct: 122 KEDKAQALDALERVGI--LDKAYQRA-------------STLSGGQQQRVAIARALVQQP 166 Query: 176 DLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHD 212 ++L DEP LD E+ + L+ E V++ H Sbjct: 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 91.9 bits (228), Expect = 4e-19 Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 38/235 (16%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65 + +SK FG LDD++L + +LGP+G+GK+T+LR++AG+++ +G Sbjct: 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE 64 Query: 66 -ATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 AT VG++ Q L TV +N+ G+ K +R E + ++ Sbjct: 65 DATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPR-SERPPEAEI------RAKV 117 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 +L ++ L D PA LSGG+++RVAL + L P +LL Sbjct: 118 HELLKLVQLDWLAD------------RYPAQ------LSGGQRQRVALARALAVEPKVLL 159 Query: 180 LDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 LDEP LDA E W+ + E + VTHD+ V + ++ +++G+ Sbjct: 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214 Score = 88.0 bits (218), Expect = 6e-18 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 20/227 (8%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE + +SK + D + +D++S +P G +V ++GP+G+GKTTL R++ G E PDSGTI G Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62 Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKL----NGHEINSRAYCSAF 425 Q R+ +L TV+++++ G + EI ++ + Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH-ELL 121 Query: 426 NFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 D + LSGGQR RV LA+ L V+LLDEP LD + L L Sbjct: 122 KLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 484 FAG----CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 V ++HD+ +A ++ G +E E Y+ Sbjct: 182 LHDELHVTTVFVTHDQEEALEVADRVVVMN-KGRIEQVGTPDEVYDH 227 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 91.8 bits (228), Expect = 4e-19 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 39/237 (16%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-- 65 + ++K FG LDDI+ S G+LGPNGAGK+T +R++ GI +GE Sbjct: 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61 Query: 66 -----ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120 A +GYLP+E G+ K ++D+ L K EE Sbjct: 62 KPLDIAARNRIGYLPEE--------------RGLYPKMKVIDQLVYLAQLKGLKKEEARR 107 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 ++ + ++ L + + + LS G +++V ++ P+LL+L Sbjct: 108 RIDEWLERLELSEYANKR---------------VEELSKGNQQKVQFIAAVIHDPELLIL 152 Query: 181 DEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 DEP + LD + ++ +RE + A V++ TH ++ + + +L +++G+ + Y Sbjct: 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 Score = 91.0 bits (226), Expect = 8e-19 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 14/201 (6%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E + ++K + +D++SF + G I G++GPNGAGKTT RM+ G PDSG + Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF- 59 Query: 378 ETVCLSYVDQSR-DSLEAEKTVWEDISGGDDIV------KLNGHEINSRA--YCSAFNFK 428 + L ++R L E+ ++ + D +V L E R + Sbjct: 60 DGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL- 118 Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--G 486 +R+ LS G + +V + +++LDEP + LD + L+D + A G Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178 Query: 487 CAVIISHDRM-FLDRLATHIL 506 VI+S +M ++ L +L Sbjct: 179 KTVILSTHQMELVEELCDRVL 199 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 91.8 bits (228), Expect = 4e-19 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 21/168 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE + +SK Y + +D +S + G ++GP+G GKTTL R++ G E+P SG I + Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60 Query: 378 E--------------TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 TV +Y +L TV+E+I+ G + KL EI R + Sbjct: 61 GKDITNLPPHKRPVNTVFQNY------ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEA 114 Query: 424 AFNFKGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + R LSGGQ+ RV +A+ L + V+LLDEP LD Sbjct: 115 LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 Score = 82.9 bits (205), Expect = 2e-16 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 48/243 (19%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 +SK +G LD ++L +LGP+G GK+T+LR++AG + +GE L Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64 Query: 71 VGYLPQEPQLDL---------SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI-A 120 P + ++ TV ENI G+ K+ + EI Sbjct: 65 TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---------------LPKAEIKE 109 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 ++ + +D L + LSGG+++RVA+ + L++ P +LLL Sbjct: 110 RVAEALDLVQLEGYANR---------------KPSQLSGGQQQRVAIARALVNEPKVLLL 154 Query: 181 DEPTNHLDAETIAWMEKYLREYSGAV----LMVTHDRYFLDNVTNWILEVDRGK----GI 232 DEP LD + M+ L+ + + VTHD+ +++ I +++GK G Sbjct: 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214 Query: 233 PYQ 235 P + Sbjct: 215 PEE 217 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 91.4 bits (227), Expect = 6e-19 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 33/243 (13%) Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + +SK+Y N + + ++S + PG V +IGP+GAGK+TL R L G P SG++ + Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 Query: 377 GETVCLSYVDQSRDSLEAE-KTVWED------ISGGDDIVKLNGHEINSRAYCSAFN-FK 428 T ++ L + +++ +S +++ L+G + S F F Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV--LSGRLGRRSTWRSLFGLFP 118 Query: 429 GGDQQ----------------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 ++Q QR LSGGQ+ RV +A+ L +IL DEP LD Sbjct: 119 KEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPA 178 Query: 473 TLSALEDALENFA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528 + + D L+ G VI+S H A I+ + +G + F+G E + Sbjct: 179 SSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRI-VFDGPPAELTDEV 236 Query: 529 LSR 531 L Sbjct: 237 LDE 239 Score = 84.4 bits (209), Expect = 7e-17 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 40/221 (18%) Query: 11 GLSKVFGS-KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-ATG 68 LSK + + KK L D++LS P + ++GP+GAGKST+LR + G+ + +G + T Sbjct: 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64 Query: 69 FT-------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115 +G + Q+ L +V EN++ G L R + + Sbjct: 65 INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR------LGRRSTWRSLFGLFP 118 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 +EE + ++ GL ++ + AD LSGG+++RVA+ + L+ P Sbjct: 119 KEEKQRALAALERVGL----------LDKAYQRAD-----QLSGGQQQRVAIARALMQQP 163 Query: 176 DLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212 L+L DEP LD + + +++ RE V++ H Sbjct: 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 91.0 bits (226), Expect = 8e-19 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 55/301 (18%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AWLA 66 K+L ++L + ++GP+G+GKST+++++A +GE WL Sbjct: 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 + +G + QEP L + T++ENI G + + T EEI + Sbjct: 427 S--QIGLVSQEPVL-FATTIRENIRYG---------KPDA--------TREEIEEAAKAA 466 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 D ++ ++L LSGG+K+R+A+ + L+ +P +LLLDE T+ Sbjct: 467 ---NAHDFILKLPDGYDTLVGERG----VQLSGGQKQRIAIARALVRNPKILLLDEATSA 519 Query: 187 LDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGN------- 237 LDAE+ +++ L + S ++V H + N + I ++ GK I QG Sbjct: 520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNA-DKIAVMEEGK-IVEQGTHDELIAL 577 Query: 238 ---YSAYLQMKAKRMAQENR-EEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVE 293 YS+ ++++ A E+ EE S ++ R SSP + +++ + S + E Sbjct: 578 GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGE 637 Query: 294 S 294 Sbjct: 638 D 638 Score = 83.7 bits (207), Expect = 1e-16 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%) Query: 318 IEAKGISKSYNDR---LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 IE + + SY R ++ +S K+P G V ++GP+G+GK+TL ++L P SG + Sbjct: 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV 410 Query: 375 HV----GETVCLSYVDQSRDSLEAEK-----TVWEDIS-GGDDIVKLNGHEINSRAYCSA 424 + + L ++ + E T+ E+I G D + E A Sbjct: 411 LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHD 470 Query: 425 F--NFKGGDQQQ---RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 F G R LSGGQ+ R+ +A+ L ++LLDE T+ LD E+ +++ Sbjct: 471 FILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQE 530 Query: 480 ALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 AL+ + ++++H R+ R A I E G + +G +E Sbjct: 531 ALDKASKGRTTIVVAH-RLSTIRNADKIAVME-EGKIVE-QGTHDE 573 Score = 73.3 bits (180), Expect = 2e-13 Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 31/230 (13%) Query: 318 IEAKGISKSY---NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 IE + +S +Y D +++NLS + G V ++GP+G+GK+T+ +L PD+G + Sbjct: 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 Query: 375 HV-GETV----------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA-YC 422 + G + + V Q T+ E+I+ G + V EI A Sbjct: 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG--TIRENIAYGSEEVSEE--EIIEAAKLA 1103 Query: 423 SAFNFKGGDQQ-------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 +A NF Q +R LSGGQ+ R+ +A+ + ++LLDE T+ LD+E+ Sbjct: 1104 NAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 Query: 476 ALEDALENFA-GCA-VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 +++AL+ G ++I+H R+ + A I + VE +G +E Sbjct: 1164 VVQEALDRAMEGRTTIVIAH-RLSTIQNADVIAVLKNGKVVE--QGTHDE 1210 Score = 66.4 bits (162), Expect = 2e-11 Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 58/193 (30%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AG---ID----KEYNGEAWL 65 VL++++LS + ++GP+G+GKST++ ++ AG ID K+ N WL Sbjct: 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWL 1062 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI---AKL 122 +G + QEP L + T++ENI G E +EEEI AKL Sbjct: 1063 RK--QIGLVSQEPVL-FNGTIRENIAYGS-----------------EEVSEEEIIEAAKL 1102 Query: 123 QDI---IDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 + I S +G +T V G LSGG+K+R+A+ + +L +P + Sbjct: 1103 ANAHNFISSLPQGY---DTRV------------GERGVQLSGGQKQRIAIARAILRNPKI 1147 Query: 178 LLLDEPTNHLDAE 190 LLLDE T+ LD+E Sbjct: 1148 LLLDEATSALDSE 1160 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 90.7 bits (225), Expect = 8e-19 Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 48/230 (20%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM------------AGID-KEYNGEAW 64 +KVL ++ + K+ I+G NG+GKSTILR++ G D KE + E+ Sbjct: 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES- 422 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE--EIAKL 122 ++G +PQ+ L + T+ NI G N S EE E K Sbjct: 423 --LRQSIGVVPQDSVL-FNDTILYNIKYG----------------NPSASDEEVVEACKR 463 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 + D + V L LSGGEK+RV+L + L +LLLDE Sbjct: 464 AGLHDVISRLPDGYQTLVGERGLM----------LSGGEKQRVSLARAFLKDAPILLLDE 513 Query: 183 PTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230 T+ LD+ET + + + V+M+ H L + I+ +D G Sbjct: 514 ATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDK-IIVLDNGT 562 Score = 76.1 bits (187), Expect = 2e-14 Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 40/233 (17%) Query: 318 IEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + SY R ++ +SF +P G V ++G NG+GK+T+ R+L SG+I + Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 Query: 377 G---------ETV--CLSYVDQSRDSLEAEKTVWEDI-----SGGDDIV-----KLNGHE 415 E++ + V Q DS+ T+ +I S D+ V + H+ Sbjct: 411 DGQDIKEVSLESLRQSIGVVPQ--DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHD 468 Query: 416 INSRAYCSAFNFKGGDQQ---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 + SR G Q +R LSGG++ RV LA+ ++LLDE T+ LD+E Sbjct: 469 VISR-------LPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521 Query: 473 TLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 T + D + + ++I H L I+ + E G E Sbjct: 522 TEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKE--YGTHSE 571 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 90.5 bits (225), Expect = 1e-18 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 48/182 (26%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E +GI+K + +D +S + G + ++G NGAGK+TL ++L+G PDSG I V Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV- 59 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437 +G E++ + A ++ I Sbjct: 60 ----------------------------------DGKEVSFASPRDA-------RRAGIA 78 Query: 438 S---LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-I 491 LS G+R V +A+ L +++LDEPT L + L + G AVI I Sbjct: 79 MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138 Query: 492 SH 493 SH Sbjct: 139 SH 140 Score = 59.7 bits (145), Expect = 2e-09 Identities = 23/58 (39%), Positives = 37/58 (63%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66 + G++K FG K LD ++LS +LG NGAGKST+++I++G+ K +GE + Sbjct: 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60 Score = 49.6 bits (119), Expect = 2e-06 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVT 210 + LS GE++ V + + L + LL+LDEPT L + + K +R AV+ ++ Sbjct: 80 VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFIS 139 Query: 211 H 211 H Sbjct: 140 H 140 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 89.7 bits (222), Expect = 2e-18 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 35/213 (16%) Query: 13 SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE---------YNGEA 63 K +K +L ++ + P + I+GP+G+GK+T+L +AG NG Sbjct: 37 EKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP 96 Query: 64 WLATGF--TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 + F GY+ Q+ L + TV+E + A L + S EE+ + Sbjct: 97 RDSRSFRKISGYVQQDDVLLPTLTVRETL-----RFSA------LLRLPSSLSKEEKRER 145 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 ++++I GL I LSGGE++RV++ LL+ P +L LD Sbjct: 146 VEEVISELGLEKCA----------DTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD 195 Query: 182 EPTNHLDAETIAWMEKYLREYSGA---VLMVTH 211 EPT+ LD+ + + + L+ + + V+ H Sbjct: 196 EPTSGLDSFSALQVVQLLKRLARSGRTVICTIH 228 Score = 71.9 bits (176), Expect = 4e-13 Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 27/209 (12%) Query: 308 PVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-- 365 +L + KS + ++ +S PG ++ ++GP+G+GKTTL L G Sbjct: 21 LEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRL 80 Query: 366 -DESPDSGTIHVGETV--------CLSYVDQSRDSLEAEKTVWEDISGGDDI---VKLNG 413 SG I + YV Q D L TV E + + L+ Sbjct: 81 NGGLKLSGEILLNGRPRDSRSFRKISGYVQQD-DVLLPTLTVRETLRFSALLRLPSSLSK 139 Query: 414 HEINSRAYC--------SAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465 E R + G+ R LSGG+R RV +A L + +++ LDEP Sbjct: 140 EEKRERVEEVISELGLEKCADTLIGNPGIR--GLSGGERKRVSIALELLTDPSILFLDEP 197 Query: 466 TNDLDTETLSALEDALENFA--GCAVIIS 492 T+ LD+ + + L+ A G VI + Sbjct: 198 TSGLDSFSALQVVQLLKRLARSGRTVICT 226 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 89.9 bits (223), Expect = 2e-18 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 45/235 (19%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF- 69 L K +G + + ++ G+LGPNGAGK+T ++++ + K +G A +A G Sbjct: 5 NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA-GHD 63 Query: 70 ----------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 +G + Q+ +D T EN+ I R Y E Sbjct: 64 VVREPREVRRRIGIVFQDLSVDDELTGWENL--------YIHARL------YGVPGAERR 109 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 ++ +++D GL + AD L + + SGG +RR+ + + L+ P++L Sbjct: 110 ERIDELLDFVGLLEA--------------ADRL-VKTYSGGMRRRLEIARSLVHRPEVLF 154 Query: 180 LDEPTNHLDAETIA--W--MEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 LDEPT LD +T A W +EK E+ +L+ TH + + + + +D G+ Sbjct: 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 Score = 88.8 bits (220), Expect = 3e-18 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 16/203 (7%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE + + K Y D + +SF++ G I G++GPNGAGKTT +MLT P SG V Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60 Query: 378 --ETVC--------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF 427 + V + V Q S++ E T WE++ + + G E R Sbjct: 61 GHDVVREPREVRRRIGIVFQDL-SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV 119 Query: 428 KGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL----EDALE 482 + R + + SGG R R+ +A+ L V+ LDEPT LD +T + + E E Sbjct: 120 GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179 Query: 483 NFAGCAVIISHDRMFLDRLATHI 505 F ++ +H ++L + Sbjct: 180 EFGMTILLTTHYMEEAEQLCDRV 202 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 89.6 bits (222), Expect = 2e-18 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 17/190 (8%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL----SYVDQS 388 + ++SF++P G IVG +G NGAGK+T +MLTG P SG + V Y+ Sbjct: 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSI 99 Query: 389 RDSLEAEKTVWEDISGGDDIVKLNGH--EINSRAYCSAFNFK------GGDQQQRIGSLS 440 + + +W D+ D + + EI + +F G + + LS Sbjct: 100 GLVMGQKLQLWWDLPALDSLE-VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLS 158 Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA---GCAVII-SHDRM 496 GQR R LA L V+ LDEPT LD + + + L+ + V++ +H Sbjct: 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218 Query: 497 FLDRLATHIL 506 + L +L Sbjct: 219 DIATLCDRVL 228 Score = 74.9 bits (184), Expect = 5e-14 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 45/255 (17%) Query: 24 DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83 DI+ +G LG NGAGKST L+++ G+ +G+ + G P + + Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN-----GKDPFRRREEYL 96 Query: 84 KTVKENIIEGVAHK----QAILDRYNELMMNYS---EKTEEEIAKLQDIIDSKGLWDLET 136 +++ ++ G + LD L + Y ++ E + L +I+D LE Sbjct: 97 RSI--GLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILD------LEG 148 Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196 ++ + L S G++ R L LL P +L LDEPT LD A + Sbjct: 149 FLKWPVRKL------------SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 Query: 197 KYLREYS----GAVLMVTHDRYFLDNVTNW---ILEVDRGKGIPYQGNYSAYLQMKAKRM 249 ++L+EY+ VL+ TH D++ +L +D+G+ + + G + + Sbjct: 197 EFLKEYNEERQATVLLTTHI---FDDIATLCDRVLLIDQGQ-LVFDGTLAQLQEQFGP-- 250 Query: 250 AQENREEISRQKAIE 264 +E E+ + K++ Sbjct: 251 YKEFSVELKQAKSLS 265 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 89.6 bits (222), Expect = 2e-18 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 16/221 (7%) Query: 317 VIEAKGISKSYNDRLL-IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++E ++KSY ++ + ++SF+ G I G++G NGAGKTTL RM+ PDSG + Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60 Query: 376 VGETVCLSYVDQSRD---------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426 + + R L A T E++ + L+ EI +R + Sbjct: 61 IDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR 120 Query: 427 FKGGD-QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED---ALE 482 + + +R+G S G + +V +A+ L ++++LDEPT+ LD T D L+ Sbjct: 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 Query: 483 NFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 N + SH ++ L ++ G V EG+ E Sbjct: 181 NEGRAVIFSSHIMQEVEALCDRVIVLH-KGEV-VLEGSIEA 219 Score = 68.4 bits (167), Expect = 5e-12 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 56/265 (21%) Query: 11 GLSKVFGSK-KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69 L+K +GSK + + D++ G+LG NGAGK+T+LR++A + +G+ G Sbjct: 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGV 64 Query: 70 T-----------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 +G L E L T +EN+ R N L + E Sbjct: 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENL--------KYFARLNGLSRKEIKARIAE 116 Query: 119 IAK---LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 ++K L + +D + + S G K++VA+ + L+ P Sbjct: 117 LSKRLQLLEYLDRR------------------------VGEFSTGMKQKVAIARALVHDP 152 Query: 176 DLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232 +L+LDEPT+ LD T + L+ AV+ +H ++ + + ++ + +G+ + Sbjct: 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 Query: 233 PYQGNYSAYLQMKAKRMAQENREEI 257 ++ R N EEI Sbjct: 213 -----LEGSIEALDARTVLRNLEEI 232 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 88.7 bits (220), Expect = 3e-18 Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 22/213 (10%) Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +I + +SK+Y R + ++SF +P G V + GP+GAGK+TL +++ G+E P G I Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 Query: 376 V-GETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY 421 V G + + V Q L ++TV+E+++ ++ EI R Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP-DRTVYENVALPLRVIGKPPREIRRRV- 118 Query: 422 CSAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 + G + + + S LSGG++ RV +A+ + + V+L DEPT +LD + + Sbjct: 119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR 178 Query: 480 ALE--NFAGCAVII-SHDRMFLDRLATHILAFE 509 E N G V++ +HD ++R+ +LA E Sbjct: 179 LFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 Score = 83.3 bits (206), Expect = 2e-16 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 51/243 (20%) Query: 8 HMAGLSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66 +SK + G ++ L D++ + + GP+GAGKST+L+++ G ++ G+ + Sbjct: 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN 62 Query: 67 TGFTVGYLP---------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111 G + L Q+ +L +TV EN+ L + Sbjct: 63 -GHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA---------------LPLRV 106 Query: 112 SEKTEEEIAK-LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 K EI + + +++D GL ++ P+ LSGGE++RVA+ + Sbjct: 107 IGKPPREIRRRVSEVLDLVGLKH---------KARALPSQ------LSGGEQQRVAIARA 151 Query: 171 LLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEVD 227 +++ P +LL DEPT +LD + + + E + VLM THD ++ + + +L ++ Sbjct: 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 Query: 228 RGK 230 G+ Sbjct: 212 DGR 214 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 88.3 bits (219), Expect = 5e-18 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 13/201 (6%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E + ++K + + +D+L+ + G V ++GP+G GKTT RM+ G E P SG I++G Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60 Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 + RD +L TV+++I+ G + K+ EI+ R A + Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI 120 Query: 430 GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENF 484 R LSGGQR RV L + + V L+DEP ++LD + + L+ + Sbjct: 121 EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180 Query: 485 AGCAVIISHDRMFLDRLATHI 505 + ++HD++ +A I Sbjct: 181 GTTTIYVTHDQVEAMTMADRI 201 Score = 83.3 bits (206), Expect = 2e-16 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 48/220 (21%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68 + ++K FG+ LDD+NL + +LGP+G GK+T LR++AG+++ +G ++ G Sbjct: 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG-G 61 Query: 69 FTVGYLP----------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 V LP Q L TV +NI G+ K + + Sbjct: 62 RDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGL--KLRKVPK--------------- 104 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 D ID + E + IE L P LSGG+++RVAL + ++ P Sbjct: 105 -----DEIDERVREVAEL---LQIEHLLDRKPKQ------LSGGQRQRVALGRAIVREPK 150 Query: 177 LLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212 + L+DEP ++LDA + A +++ + + VTHD Sbjct: 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 88.2 bits (219), Expect = 6e-18 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 33/222 (14%) Query: 13 SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG 72 S + L DINL + I+GP G+GKS++L + G ++ +G + ++ Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIA 69 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 Y+ QEP + + T++ENI+ G + +RY +++ + + + EI D Sbjct: 70 YVSQEPWI-QNGTIRENILFGKPFDE---ERYEKVIKACALEPDLEILPDGD-------- 117 Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192 TE+ G +LSGG+K+R++L + + S D+ LLD+P + +DA Sbjct: 118 --LTEI------------GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163 Query: 193 AW-MEKYLREY---SGAVLMVTHDRYFLDNVTNWILEVDRGK 230 E + + ++VTH L + + I+ +D G+ Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHA-DQIVVLDNGR 204 Score = 78.6 bits (194), Expect = 4e-15 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 27/164 (16%) Query: 324 SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS 383 S + +++ ++P G +V ++GP G+GK++L L G+ SG++ V ++ + Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI--A 69 Query: 384 YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF----------NFKGGDQQ 433 YV Q T+ E+I L G + Y GD Sbjct: 70 YVSQEPWIQNG--TIRENI--------LFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119 Query: 434 QRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 + IG +LSGGQ+ R+ LA+ + S ++ LLD+P + +D Sbjct: 120 E-IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 86.9 bits (215), Expect = 1e-17 Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 20/211 (9%) Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE ++K+Y N +D ++ + G V ++GP+GAGK+TL +++ +E P SGTI V Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 Query: 377 -GETVC------LSYVDQS-----RDS-LEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 G+ V + Y+ + +D L ++ V+E+++ ++ + EI R + Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV-PA 119 Query: 424 AFNFKGGDQQQRI--GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 A G + R LSGG++ RV +A+ + + +++ DEPT +LD +T + + L Sbjct: 120 ALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 Query: 482 E--NFAGCAVIIS-HDRMFLDRLATHILAFE 509 + N AG V+++ H + +D ++A E Sbjct: 180 KKINKAGTTVVVATHAKELVDTTRHRVIALE 210 Score = 77.2 bits (190), Expect = 1e-14 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 50/230 (21%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP---- 75 LD IN+S + ++GP+GAGKST+L+++ + +G G V L Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRAI 73 Query: 76 -----------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK-LQ 123 Q+ +L + V EN+ + + EI K + Sbjct: 74 PYLRRKIGVVFQDFRLLPDRNVYENVA---------------FALEVTGVPPREIRKRVP 118 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 ++ GL + PA+ LSGGE++RVA+ + +++SP +L+ DEP Sbjct: 119 AALELVGLSHKHRAL---------PAE------LSGGEQQRVAIARAIVNSPTILIADEP 163 Query: 184 TNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGK 230 T +LD +T + L++ + A V++ TH + +D + ++ ++RGK Sbjct: 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 86.9 bits (215), Expect = 1e-17 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 12/200 (6%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E +G++KS+ D+ +DN+SF++PPG I G++GPNGAGKTT FRM+ G P G I Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNG------HEINSR--AYCSAFNFKG 429 + L E+ ++ ++ D + L EI + A+ Sbjct: 63 GGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI-V 121 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GC 487 G + ++I LS G + ++ + +++LDEP + LD + L+DA+ G Sbjct: 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 Query: 488 AVIISHDRM-FLDRLATHIL 506 +I S RM ++ L +L Sbjct: 182 TIIFSSHRMEHVEELCDRLL 201 Score = 84.9 bits (210), Expect = 6e-17 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 39/234 (16%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGF 69 G++K FG KK +D+I+ P G+LGPNGAGK+T R++ G+ + GE W Sbjct: 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL 66 Query: 70 T------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 + +GYLP+E L TV++ + +Y + E KLQ Sbjct: 67 SQEIKNRIGYLPEERGLYPKMTVEDQL------------KYLAELKGM--PKAEIQKKLQ 112 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 ++ + +T+ I LS G ++++ ++ P+LL+LDEP Sbjct: 113 AWLERLEIVGKKTK---------------KIKELSKGNQQKIQFISAVIHEPELLILDEP 157 Query: 184 TNHLD---AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 + LD E + L+E ++ +H ++ + + +L + +G+ + Y Sbjct: 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY 211 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 86.4 bits (214), Expect = 2e-17 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 43/211 (20%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----------- 65 K +L I+ + +GI+GP+G+GKST+ R++ GI +G L Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENI--IEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 G +GYLPQ+ +L T+ ENI A + ++ E A+L Sbjct: 407 QLGRHIGYLPQDVEL-FDGTIAENIARFGEEADPEKVI----------------EAARLA 449 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 + + + ++ G LSGG+++R+AL + L P L++LDEP Sbjct: 450 GVHELILRLPQGYDTRIG-------EGGAT---LSGGQRQRIALARALYGDPFLVVLDEP 499 Query: 184 TNHLDAETIAWME---KYLREYSGAVLMVTH 211 ++LD+E A + + G V+++ H Sbjct: 500 NSNLDSEGEAALAAAILAAKARGGTVVVIAH 530 Score = 82.6 bits (204), Expect = 2e-16 Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 62/265 (23%) Query: 262 AIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAK 321 AI + ++ ARQS R+ + +AA R +P+ G + +E Sbjct: 295 AIANWKQFV----AARQSY--KRLNELLAELPAAAER--------MPLPAPQGALSVERL 340 Query: 322 GISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI------- 374 + + ++ +SF L G +G+IGP+G+GK+TL R+L G P SG++ Sbjct: 341 TAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 Query: 375 ----------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 H+G Y+ Q + + T+ E+I+ + E + A Sbjct: 401 RQWDREQLGRHIG------YLPQDVELFDG--TIAENIARFGE-------EADPEKVIEA 445 Query: 425 FNFKGGDQ---------QQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 G + RIG +LSGGQR R+ LA+ L +++LDEP ++LD+ Sbjct: 446 ARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 Query: 472 ETLSALEDAL---ENFAGCAVIISH 493 E +AL A+ + G V+I+H Sbjct: 506 EGEAALAAAILAAKARGGTVVVIAH 530 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 86.5 bits (214), Expect = 2e-17 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 44/247 (17%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65 + +S KK+L D++ P I+GPNGAGK+T+L ++ G +G+ L Sbjct: 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93 Query: 66 -----ATGF----TVGYLPQEPQLDLSK--TVKENIIEGVAHKQAILDRYNELMMNYSEK 114 T F +G + E TV++ ++ G + + + + Sbjct: 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF---------FASIGIYQEDL 144 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 T E++A Q +++ G L SLS GE+RRV + + L+ Sbjct: 145 TAEDLAAAQWLLELLGAKHLADR---------------PFGSLSQGEQRRVLIARALVKD 189 Query: 175 PDLLLLDEPTNHLDAETIAWMEKYLRE-----YSGAVLMVTHDRYFLDNVTNWILEVDRG 229 P+LL+LDEP LD + L E + A+L VTH + L + G Sbjct: 190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249 Query: 230 KGIPYQG 236 + + QG Sbjct: 250 EVV-AQG 255 Score = 78.0 bits (192), Expect = 6e-15 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 24/215 (11%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 IE K +S N + ++ +LS+++ PG ++GPNGAGKTTL +LTG+ P SG + + Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLL 91 Query: 377 ------GETV-----CLSYVDQSRDSLEAEKTVWEDI--SGGDDIVKLNGHEI--NSRAY 421 GET+ + V + D+ SG + + ++ A Sbjct: 92 GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA 151 Query: 422 CSAFNFKGGDQ---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478 G + + GSLS G++ RV +A+ L +++LDEP LD L Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211 Query: 479 DALENFAGCA-----VIISHDRMFLDRLATHILAF 508 + LE A + ++H + TH L Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 85.1 bits (210), Expect = 4e-17 Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 21/250 (8%) Query: 263 IERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKG 322 + + Q+ K E ++ A R ++ + + + Sbjct: 514 LLIFVPFKRRMRALTQNMLKGFEPVEVEKLDVARER----NRVETLLFRSSYSSALVLNN 569 Query: 323 ISKSYNDRLL-IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETV 380 +SK Y + + LSF +PPG G++G NGAGKTT F+MLTG+ P SG + G + Sbjct: 570 LSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDI 629 Query: 381 CLSY-VDQSRDSL---EAEKTVWEDISGGDDIV------KLNGHEINSRA--YCSAFNFK 428 +S Q R L +WE+++G + + L +I S Sbjct: 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGL- 688 Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--G 486 G +++ + SGG + R+ A L +VILLDEP+ LD + L D + G Sbjct: 689 GPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 Query: 487 CAVIISHDRM 496 A+I++ M Sbjct: 749 KAIILTSHSM 758 Score = 81.2 bits (200), Expect = 6e-16 Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 45/217 (20%) Query: 11 GLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA--- 66 LSKV+G K + ++ + P G+LG NGAGK+T +++ G K +GEA + Sbjct: 569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHD 628 Query: 67 -TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 T T +GY PQ L T +E+ L+ Y L Sbjct: 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREH-----------LEFYARLRGLPRSDIGS 677 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 I KL ++ + + + + SGG KRR++ L+ P + Sbjct: 678 AIEKLLRLVGLGPYANKQ------------------VRTYSGGNKRRLSFAIALIGDPSV 719 Query: 178 LLLDEPTNHLD--AETIAW-MEKYLREYSGAVLMVTH 211 +LLDEP+ LD A W + LR+ A+++ +H Sbjct: 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH 756 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 83.6 bits (206), Expect = 1e-16 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 25/226 (11%) Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + +S SY + ++ ++SF + PG V ++GP+G+GK+TL ++L P SG I + Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 Query: 377 GET-----------VCLSYVDQSRDSLEAEKTVWEDIS-GGDDIVKLNGHEINSRAYCSA 424 + V Q D L T+ E+I+ G D E A Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQ--DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHE 446 Query: 425 FNFKGGDQ-----QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 F D +R +LSGGQR R+ +A+ L +++LDE T+ LDTET + ++D Sbjct: 447 FIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 Query: 480 ALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 AL+ +II+H R+ + A I+ + VE G EE Sbjct: 507 ALKKLLKGRTTLIIAH-RLSTIKNADRIIVLDNGRIVE--RGTHEE 549 Score = 77.8 bits (191), Expect = 6e-15 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 58/249 (23%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG----------ID----KEYNGE 62 G K VL DI+ S P K+ I+GP+G+GKST+++++ ID ++ + + Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399 Query: 63 AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI--- 119 + +G + Q+P L S T++ENI G + T+EEI Sbjct: 400 SLRKR---IGIVSQDPLL-FSGTIRENIALGRP-----------------DATDEEIEEA 438 Query: 120 ---AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 A + I + +T V G +LSGG+++R+A+ + LL +P Sbjct: 439 LKLANAHEFIANLPD-GYDTIV------------GERGVNLSGGQRQRLAIARALLRNPP 485 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 +L+LDE T+ LD ET A ++ L++ L++ H + N + I+ +D G+ I Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA-DRIIVLDNGR-IVE 543 Query: 235 QGNYSAYLQ 243 +G + L Sbjct: 544 RGTHEELLA 552 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 83.2 bits (205), Expect = 2e-16 Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 23/248 (9%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 G++ +G+ + L DI L + +LGP+GAGKS++LR++ ++ +G +A Sbjct: 7 GINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN-- 64 Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM--MNYSEKTEEEIAKLQDIIDS 128 D SKT + I + ++ + L + E E ++ + Sbjct: 65 --------HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD 116 Query: 129 KGLWDLETEVQVAIESLHCP--ADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 + L + ++ L AD + LSGG+++RVA+ + L+ P +LL DEPT Sbjct: 117 QAL----ARAEKLLKRLRLKPYADRYPL-HLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 Query: 187 LDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243 LD E A + ++E + ++VTH+ + ++ ++ G I QG+ S + + Sbjct: 172 LDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGH-IVEQGDASCFTE 230 Query: 244 MKAKRMAQ 251 + + Sbjct: 231 PQTEAFKN 238 Score = 80.5 bits (198), Expect = 1e-15 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 22/218 (10%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 I+ GI+ Y + +++ P G + ++GP+GAGK++L R+L E P SGT+++ Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 Query: 377 GETVCLSYVDQSRDSLEAEKTV---------WEDISGGDDIV-------KLNGHEINSRA 420 G S + + + V W ++ ++++ L+ + +RA Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122 Query: 421 YCSAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 + R LSGGQ+ RV +A+ L V+L DEPT LD E + + Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182 Query: 480 ALENFAGCA---VIISHDRMFLDRLATHILAFEGNGHV 514 ++ A VI++H+ + A+ ++ E NGH+ Sbjct: 183 IIKELAETGITQVIVTHEVEVARKTASRVVYME-NGHI 219 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 82.9 bits (205), Expect = 2e-16 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 35/199 (17%) Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +E + +S Y + ++ N+SF + PG + +IGP+G+GK+TL R++ G P SG + Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 Query: 376 V-GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQ 434 + G + ++ D + + +D G + Sbjct: 61 LDGADISQWDPNELGDHV---GYLPQDD-----------------------ELFSGSIAE 94 Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGCAVII 491 I LSGGQR R+ LA+ L +++LDEP + LD E AL A+ ++I Sbjct: 95 NI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 Query: 492 SHDRMFLDRLATHILAFEG 510 +H R A IL E Sbjct: 153 AH-RPETLASADRILVLED 170 Score = 60.9 bits (148), Expect = 9e-10 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 13/96 (13%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-----------AWL 65 VL +++ S P + I+GP+G+GKST+ R++ G+ + +G Sbjct: 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPN 72 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL 101 G VGYLPQ+ +L S ++ ENI+ G +Q + Sbjct: 73 ELGDHVGYLPQDDEL-FSGSIAENILSG-GQRQRLG 106 Score = 52.1 bits (125), Expect = 4e-07 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 153 NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME---KYLREYSGAVLMV 209 NI LSGG+++R+ L + L +P +L+LDEP +HLD E + L+ +++ Sbjct: 95 NI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 Query: 210 TH 211 H Sbjct: 153 AH 154 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 82.6 bits (204), Expect = 2e-16 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 31/217 (14%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 + +L ++N P ++ I G +GAGK+++LR +AG+ +G + + +LPQ Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136 P L T++E + A ++ + + L + +D + WD Sbjct: 464 RPYLPQG-TLREALCYPNAAPDFSDAELVAVL------HKVGLGDLAERLDEEDRWDRV- 515 Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196 LSGGE++R+A +LLL P + LDE T+ LD ET + Sbjct: 516 --------------------LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY 555 Query: 197 KYLRE--YSGAVLMVTHDRYFLDNVTNWILEVDRGKG 231 + L+E V+ V H R L N + LE+ G Sbjct: 556 QLLKEELPDATVISVGH-RPTLWNFHSRQLELLDDAG 591 Score = 67.2 bits (164), Expect = 1e-11 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 14/191 (7%) Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ-- 387 + L+ L+F++ PG + + G +GAGKT+L R L G SG I + L ++ Q Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465 Query: 388 --SRDSLEAEKTVWEDISG--GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQ 443 + +L E + + + D + H++ + D+ R+ LSGG+ Sbjct: 466 YLPQGTL-REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD--EEDRWDRV--LSGGE 520 Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCAVI-ISHDRMFLDRL 501 + R+ A++L + LDE T+ LD ET L L E VI + H R L Sbjct: 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH-RPTLWNF 579 Query: 502 ATHILAFEGNG 512 + L + Sbjct: 580 HSRQLELLDDA 590 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 82.6 bits (204), Expect = 3e-16 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 16/195 (8%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 +EA+ +S +R L +LSF L G + + GPNGAGKTTL R+L G PD+G ++ Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 Query: 377 --GETVCLSYVDQS------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK 428 Q+ + ++ E T E++ +G + + + Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF---HGSGNAATIWEALAQVG 119 Query: 429 -GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485 G + +G LS GQ+ RV LA++ S + +LDEP LD E ++ L + A Sbjct: 120 LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179 Query: 486 -GCAVIISHDRMFLD 499 G ++ +H + + Sbjct: 180 GGIVLLTTHQPLPIA 194 Score = 75.3 bits (185), Expect = 4e-14 Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 45/219 (20%) Query: 7 YHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWL 65 LS G + + D++ + + I GPNGAGK+T+LRI+AG+ + GE W Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 Query: 66 ATGFTVG---------YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTE 116 YL +P + T EN+ + + Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENL------------HFWQRFHGSGNA-- 108 Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 A + + + GL LE P LS G++RRVAL +L LS Sbjct: 109 ---ATIWEALAQVGLAGLE----------DLPV-----GQLSAGQQRRVALARLWLSPAP 150 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHD 212 L +LDEP LD E +A + + ++ G VL+ TH Sbjct: 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 82.6 bits (204), Expect = 3e-16 Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 43/219 (19%) Query: 18 SKKVLDDINL-----SFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG 72 KK L + L S IGILGPNG GK+T ++++AG+ K G+ TV Sbjct: 6 MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVS 64 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 Y PQ + D TV++ ++ + + + +++ I+D Sbjct: 65 YKPQYIKADYEGTVRD-LLSSITKDFYTHPYFKTEIAK--------PLQIEQILDR---- 111 Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192 + LSGGE +RVA+ L D+ LLDEP+ +LD E Sbjct: 112 --------------------EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151 Query: 193 AWMEKYLREY----SGAVLMVTHDRYFLDNVTNWILEVD 227 K +R + +V HD +D + + ++ + Sbjct: 152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE 190 Score = 79.6 bits (196), Expect = 2e-15 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%) Query: 323 ISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381 + K+ + L ++ S ++G++GPNG GKTT +ML G PD G I + E Sbjct: 6 MKKTLGEFTLEVEGGSIS--ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDT 62 Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ--QQRIGSL 439 +SY Q + + E TV + +S + +Q + + L Sbjct: 63 VSYKPQYIKA-DYEGTVRDLLSS-----ITKDFYTHPYFKTEIAKPLQIEQILDREVPEL 116 Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDR 495 SGG+ RV +A L ++ LLDEP+ LD E + FA A ++ HD Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176 Query: 496 MFLDRLATHILAFEG 510 + +D LA ++ FEG Sbjct: 177 IMIDYLADRLIVFEG 191 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 82.3 bits (203), Expect = 3e-16 Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 52/236 (22%) Query: 1 MARKFIYHMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID 56 M + I + LSK G + +L + L + I+GP+G+GKST+L ++AG+D Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60 Query: 57 KEYNGEAWLA---------------TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL 101 +GE L VG++ Q L + T EN+ + Sbjct: 61 DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL------- 113 Query: 102 DRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGE 161 + S AK ++++ GL T H PA LSGGE Sbjct: 114 -----ELRGESSADSRAGAK--ALLEAVGLGKRLT---------HYPA------QLSGGE 151 Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDR 213 ++RVAL + PD+L DEPT +LD T + RE +++VTHD Sbjct: 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 Score = 59.9 bits (145), Expect = 2e-09 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 31/211 (14%) Query: 317 VIEAKGISKSYNDRL----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +IE +SK+ ++ + + G V ++GP+G+GK+TL +L G + P SG Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65 Query: 373 TIHVGETVCLSYVDQSRDSLEAEKT--VWEDISGGDDIVKLNGHEINSRAYCSAFNFKGG 430 + + + +R +L A V++ I L E N Sbjct: 66 EVRLLGQPLHKLDEDARAALRARHVGFVFQSFH---LIPNLTALE-NVALPLELRGESSA 121 Query: 431 DQQQRI-----------------GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 D + LSGG++ RV LA+ +V+ DEPT +LD T Sbjct: 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 Query: 474 LSALEDAL----ENFAGCAVIISHDRMFLDR 500 + D L V+++HD R Sbjct: 182 GDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 82.2 bits (203), Expect = 3e-16 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 21/219 (9%) Query: 318 IEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + ++K Y + ++NL+ ++ G + +IGP+G+GKTT +M+ P SG I + Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY--CS 423 GE + + YV Q L TV E+I+ ++K +I RA + Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQI-GLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119 Query: 424 AFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL- 481 + R LSGGQ+ RV +A+ L + ++L+DEP LD T L++ Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 Query: 482 ---ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517 + V ++HD RLA I A NG + Sbjct: 180 RLQQELGKTIVFVTHDIDEAFRLADRI-AIMKNGEIVQV 217 Score = 57.5 bits (139), Expect = 8e-09 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 53/222 (23%) Query: 12 LSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 ++K + G KK ++++NL + ++GP+G+GK+T ++++ + + +GE ++ Sbjct: 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI 65 Query: 71 -----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSEK 114 +GY+ Q+ L TV+ENI + K+ I +R +EL+ Sbjct: 66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP-KEKIRERADELL------ 118 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 L L+ + A H LSGG+++RV + + L + Sbjct: 119 ---------------ALVGLD-PAEFADRYPH---------ELSGGQQQRVGVARALAAD 153 Query: 175 PDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 P LLL+DEP LD T +++ +E ++ VTHD Sbjct: 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 82.1 bits (203), Expect = 4e-16 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 47/224 (20%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------AWLATGF 69 G L D++ +IG++G NGAGKST+LR++AGI +G + L G Sbjct: 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-LGL 91 Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129 G+ P+L T +ENI N ++ S K E K+ +II+ Sbjct: 92 GGGF---NPEL----TGRENI------------YLNGRLLGLSRK--EIDEKIDEIIEFS 130 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 L D + P + + S G K R+A PD+LL+DE DA Sbjct: 131 ELGD----------FIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 Query: 190 ETIAWMEKYLREY---SGAVLMVTHDRYFLDNVTNWILEVDRGK 230 ++ LRE V++V+HD + + + L +++GK Sbjct: 176 AFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219 Score = 81.0 bits (200), Expect = 8e-16 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 7/216 (3%) Query: 307 IPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD 366 G + G + + ++SF++P G +G+IG NGAGK+TL R+L G Sbjct: 12 TYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 Query: 367 ESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCSAF 425 PDSGT+ V V E T E+I ++ L+ EI+ + F Sbjct: 72 YPPDSGTVTVRGRVSSLLGLGG--GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF 129 Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF- 484 + G + + S G + R+ A +++L+DE D + L Sbjct: 130 SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189 Query: 485 --AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFE 518 +++SHD + RL L E G + + Sbjct: 190 KQGKTVILVSHDPSSIKRLCDRALVLE-KGKIRFDG 224 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 81.7 bits (202), Expect = 4e-16 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 46/231 (19%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------- 52 + + L+ +G K L DINL + ++GP+G GKST+LR + Sbjct: 2 TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61 Query: 53 -AGIDKE--YNGEAWLATGF-------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILD 102 A ++ E +G+ VG + Q+P ++ +N+ G+ Sbjct: 62 GARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP-FPMSIYDNVAYGL-------- 112 Query: 103 RYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEK 162 R + + +K +EI + + LWD EV+ + LH A LSGG++ Sbjct: 113 RLHGIK----DKELDEIV--ESSLKKAALWD---EVK---DRLHKSA-----LGLSGGQQ 155 Query: 163 RRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211 +R+ + + L P++LL+DEPT+ LD + +E+ + E +++VTH Sbjct: 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206 Score = 71.3 bits (175), Expect = 6e-13 Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 30/249 (12%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE + ++ Y D+ + +++ +P + +IGP+G GK+TL R L G Sbjct: 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65 Query: 376 VGETVCL--SYVDQSRDSLEA--------------EKTVWEDISGGDDIVKLNGHEINSR 419 GE + + D D +E +++++++ G + + E++ Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEI 125 Query: 420 AYCSAFNFKGG-------DQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 S K D+ + LSGGQ+ R+ +A+ L V+L+DEPT+ LD Sbjct: 126 VESS---LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 Query: 472 ETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKL 529 + +E+ + VI++H+ R++ + AF G + F + + K Sbjct: 183 ISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYT-AFFYLGELVEFGPTDKIFTNPKH 241 Query: 530 SRSSRVLSG 538 R+ +SG Sbjct: 242 KRTEDYISG 250 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 81.2 bits (201), Expect = 6e-16 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 45/152 (29%) Query: 46 STILRIMAGIDKEYNGEAWLATGF------------TVGYLPQEPQLDLSKTVKENIIEG 93 ST+L+++ G+ + +G L +G + Q+PQL TV+EN+ G Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60 Query: 94 VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN 153 + K+A R E + GL D D Sbjct: 61 LRDKEA-DARAEEALERV------------------GLPDF--------------LDRSP 87 Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 + +LSGG+K+RVA+ + LL P LLLLDEPT Sbjct: 88 VGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119 Score = 75.4 bits (186), Expect = 4e-14 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 20/125 (16%) Query: 357 TTLFRMLTGDESPDSGTIHVGETV------------CLSYVDQSRDSLEAEKTVWEDISG 404 +TL +++TG P SGTI + + V Q L E TV E++ Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQD-PQLFPELTVRENLFF 59 Query: 405 GDDIVKLNGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILL 462 G E ++RA + +G+LSGGQ+ RV +A+ L ++LL Sbjct: 60 GLRD-----KEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLL 114 Query: 463 DEPTN 467 DEPT Sbjct: 115 DEPTA 119 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 81.2 bits (200), Expect = 7e-16 Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 50/214 (23%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA-WLATGFT----- 70 G K+L++I+LS I I GP+G GKST+L+I+A + +G + + Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73 Query: 71 -----VGYLPQEPQLDLSKTVKENII--EGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 V Y Q P L TV++N+I + +++ +L+ L Sbjct: 74 AYRQQVSYCAQTPAL-FGDTVEDNLIFPWQIRNRRPDRAAALDLL---------ARFALP 123 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 D I +K NIT LSGGEK+R+AL + L P +LLLDE Sbjct: 124 DSILTK-----------------------NITELSGGEKQRIALIRNLQFMPKILLLDEI 160 Query: 184 TNHLD---AETI-AWMEKYLREYSGAVLMVTHDR 213 T+ LD I + +Y+RE + AVL +THD+ Sbjct: 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 Score = 73.5 bits (180), Expect = 1e-13 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E K + D +++N+S + G + + GP+G GK+TL +++ SP SGT+ Sbjct: 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62 Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425 GE V +SY Q+ TV +++ I + + F Sbjct: 63 EGEDVSTLKPEAYRQQVSYCAQTPALF--GDTVEDNLIFPWQIRNRRPDRAAALDLLARF 120 Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 + I LSGG++ R+ L + L+ ++LLDE T+ LD +E+ + Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 80.7 bits (199), Expect = 1e-15 Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 43/236 (18%) Query: 24 DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA----TGFT-----VGYL 74 +L+ + ILGP+GAGKST+L ++AG + +GE + T V L Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 Query: 75 PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134 QE L TV +NI G++ + E+ K++ GL Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKL--------------NAEQREKVEAAAAQVGLAGF 122 Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AE 190 + LSGG+++RVAL + L+ +LLLDEP + LD AE Sbjct: 123 LKRLP---------------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167 Query: 191 TIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKA 246 +A + + E +LMVTH + + ++ +D G+ I QG+ L KA Sbjct: 168 MLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGR-IAAQGSTQELLSGKA 222 Score = 74.6 bits (183), Expect = 7e-14 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 16/212 (7%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 + + SY + +L+ P G IV ++GP+GAGK+TL ++ G E+P SG I + Sbjct: 2 LALDDVRFSYGHLPMRFDLTV--PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59 Query: 377 GETVCLSYVDQ-------SRDSLEAEKTVWEDIS-GGDDIVKLNGHEINSRAYCSAFNFK 428 G S + ++L A TV ++I G +KLN + +A Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119 Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENF 484 G ++ G LSGGQR RV LA+ L ++LLDEP + LD E L+ + + Sbjct: 120 AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 Query: 485 AGCAVIISHDRMFLDRLATHILAFEGNGHVEW 516 ++++H R+A ++ + NG + Sbjct: 180 KMTLLMVTHHPEDAARIADRVVFLD-NGRIAA 210 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 80.3 bits (198), Expect = 1e-15 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 43/215 (20%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----A 66 LSK + K L +++L ILGP G+GKS +L +AG K +G+ L Sbjct: 5 NLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63 Query: 67 TGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 T + Y+PQ L TV +NI G+ ++ +E K Sbjct: 64 TNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK--------------VDKKEIERK 109 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 + +I + G+ L L+ +LSGGE++RVA+ + L+ +P +LLLD Sbjct: 110 VLEIAEMLGIDHL----------LN-----RKPETLSGGEQQRVAIARALVVNPKILLLD 154 Query: 182 EPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212 EP + LD T ++K +E+ VL VTHD Sbjct: 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 Score = 71.0 bits (174), Expect = 7e-13 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 22/204 (10%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 ++ + +SK + + L N+S ++ G ++GP G+GK+ L + G PDSG I + Sbjct: 1 LKVENLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59 Query: 377 GETVC--------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK 428 G+ + +SYV Q+ +L TV+++I+ G K++ EI + A Sbjct: 60 GKDITNLPPEKRDISYVPQNY-ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA-EML 117 Query: 429 GGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALE 482 G D ++ +LSGG++ RV +A+ L ++LLDEP + LD T L+ + Sbjct: 118 GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 Query: 483 NFAGCAVIISHD----RMFLDRLA 502 F + ++HD D++A Sbjct: 178 EFGVTVLHVTHDFEEAWALADKVA 201 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 80.2 bits (198), Expect = 1e-15 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 29/229 (12%) Query: 318 IEAKGISKSYNDR---LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 IE K +S Y R ++ LS +PPG V ++G +G GK+T+ +L P SG I Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 Query: 375 HV-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 + G + + V Q + T+ E+I G E ++ + Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG--TIAENIRYGKPDATDEEVEEAAKK-AN 117 Query: 424 AFNF-----KGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 +F G D +R LSGGQ+ R+ +A+ L ++LLDE T+ LD E+ Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177 Query: 477 LEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 +++AL+ ++I+H R+ R A I + VE +G +E Sbjct: 178 VQEALDRAMKGRTTIVIAH-RLSTIRNADLIAVLQNGQVVE--QGTHDE 223 Score = 76.3 bits (188), Expect = 2e-14 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 46/188 (24%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GID-KEYNGEAWL 65 +L ++L+ P + ++G +G GKST++ ++ G+D ++ N Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 + +G + QEP L T+ ENI G + +++ EE AK +I Sbjct: 77 SQ---IGLVSQEPVL-FDGTIAENIRYGKP--------------DATDEEVEEAAKKANI 118 Query: 126 ID-SKGLWD-LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 D L D +T V G + LSGG+K+R+A+ + LL +P +LLLDE Sbjct: 119 HDFIMSLPDGYDTLV------------GERGSQLSGGQKQRIAIARALLRNPKILLLDEA 166 Query: 184 TNHLDAET 191 T+ LDAE+ Sbjct: 167 TSALDAES 174 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 79.8 bits (197), Expect = 2e-15 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 73/234 (31%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG--IDKEYNGEAWL--------A 66 K++L +++ P I+GP+GAGKST+L +AG +GE + + Sbjct: 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRS 79 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 +GY+PQ+ L + TV+E LM AKL+ + Sbjct: 80 FRKIIGYVPQDDILHPTLTVRET-----------------LMFA---------AKLRGL- 112 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 SGGE++RV++ L+S+P LL LDEPT+ Sbjct: 113 -------------------------------SGGERKRVSIALELVSNPSLLFLDEPTSG 141 Query: 187 LDAETIAWMEKYLREYSGA---VLMVTHD-RYFLDNVTNWILEVDRGKGIPYQG 236 LD+ + + LR + ++ H + + + +L + +G+ I Y G Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI-YFG 194 Score = 78.3 bits (193), Expect = 6e-15 Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 47/196 (23%) Query: 315 HVVIEAKGISK------SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG--D 366 V + + ++ S + + L+ N+S K PG + ++GP+GAGK+TL L G Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60 Query: 367 ESPDSGTIHVGET--------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS 418 SG + + + YV Q D L TV E + Sbjct: 61 GLGVSGEVLINGRPLDKRSFRKIIGYVPQD-DILHPTLTVRETL---------------- 103 Query: 419 RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478 +A ++ LSGG+R RV +A L S +++ LDEPT+ LD+ + + Sbjct: 104 --MFAA----------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM 151 Query: 479 DALENFA--GCAVIIS 492 L A G +I S Sbjct: 152 SLLRRLADTGRTIICS 167 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 79.2 bits (195), Expect = 3e-15 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 27/229 (11%) Query: 317 VIEAKGISKSYNDR---LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 VIE + +S +Y R ++ NLSF + PG +V ++GP+G+GK+T+ +L P SG Sbjct: 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 Query: 374 IHVGETVCLSYVD----------QSRDSLEAEKTVWEDISGGDDIVKLNGHEINS---RA 420 I + V +S ++ ++ + ++ E+I+ G D EI + A Sbjct: 525 ILLDG-VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NATDEEIEAAAKMA 581 Query: 421 YCSAF--NFKGGDQQQ---RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 F NF G + LSGGQ+ R+ +A+ L V++LDE T+ LD E+ Sbjct: 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 Query: 476 ALEDALE-NFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 +++AL+ G V++ R+ R A I+ + VE G +E Sbjct: 642 LVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE--MGTHDE 688 Score = 75.8 bits (186), Expect = 3e-14 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 52/211 (24%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GID-KEYNGEAWLA 66 VL +++ + P + ++GP+G+GKSTI ++ G+ + N + +L Sbjct: 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK-YLR 541 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT--EEEIAKLQD 124 +G + QEP L S +++ENI G + + +E + ++ E I D Sbjct: 542 R--KIGLVGQEPVL-FSGSIRENIAYG------LDNATDEEIEAAAKMANAHEFITNFPD 592 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 T V G + LSGG+K+R+A+ + LL +P +L+LDE T Sbjct: 593 --------GYNTVV------------GEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT 632 Query: 185 NHLDAETIA----WMEKYLREYSGAVLMVTH 211 + LDAE+ +++ ++ + VL++ H Sbjct: 633 SALDAESEYLVQEALDRLMQGRT--VLVIAH 661 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 78.7 bits (194), Expect = 3e-15 Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 46/205 (22%) Query: 317 VIEAKGISKSYNDRLL---------IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367 ++E K + K + +D +SF + G +G++G +G GK+TL R++ G E Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63 Query: 368 SPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAF 425 P SG I + G DI KL+ E R Sbjct: 64 EPTSGEI---------------------------LFEGKDITKLSKEERRERVLELLEKV 96 Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDAL 481 + LSGGQR R+ +A+ L +I+ DEP + LD + L+ L+D Sbjct: 97 GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ 156 Query: 482 ENFAGCAVIISHD----RMFLDRLA 502 E + ISHD R DR+A Sbjct: 157 EELGLTYLFISHDLSVVRYISDRIA 181 Score = 64.5 bits (157), Expect = 8e-11 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 64/225 (28%) Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 K + + K +D ++ S +G++G +G GKST+ R++ G+++ +GE Sbjct: 11 KKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI 70 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY-NELMMNYSEKTEEEIAKL 122 +E + + V E ++E V + L RY +EL Sbjct: 71 LFEGKDITKLSKEERR----ERVLE-LLEKVGLPEEFLYRYPHEL--------------- 110 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 SGG+++R+ + + L +P L++ DE Sbjct: 111 -----------------------------------SGGQRQRIGIARALALNPKLIVADE 135 Query: 183 PTNHLD----AETIAWMEKYLREYSGAVLMVTHD----RYFLDNV 219 P + LD A+ + ++ E L ++HD RY D + Sbjct: 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRI 180 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 78.7 bits (194), Expect = 3e-15 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 50/222 (22%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-IMAGIDKE----------YNGEAWL 65 G K +D ++ +GI+G +G+GKS + + IM + K ++G+ L Sbjct: 16 GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75 Query: 66 AT---------GFTVGYLPQEPQ--LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 + G + + Q+P L+ T+ + I E + R + ++ E Sbjct: 76 SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--------RLHGKGLSKKEA 127 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 E I L+ + + + H LSGG ++RV + L + Sbjct: 128 KERAIELLELV-------GIPDPERRLKSYPH---------ELSGGMRQRVMIAMALALN 171 Query: 175 PDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 P LL+ DEPT LD A+ + +++ RE A++++THD Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213 Score = 61.0 bits (148), Expect = 7e-10 Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 43/258 (16%) Query: 317 VIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 ++E K +S S+ +D +SF+L G I+G++G +G+GK+ L + + G + Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60 Query: 373 TIHVGETVCLSYVDQSRDSL---EAEKTVWEDISG---------------GDDIVK--LN 412 I GE + + + SL E K ++I+ GD I + Sbjct: 61 RIVGGE---ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117 Query: 413 GHEINSRAY-----CSAFNFKGGDQQQRIGS-----LSGGQRGRVHLAKILKSGGNVILL 462 + S+ G +R LSGG R RV +A L +++ Sbjct: 118 HGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 Query: 463 DEPTNDLDTETLSALEDALENFA---GCAVI-ISHDRMFLDRLATHILAFEGNGHVEWFE 518 DEPT LD + + D L+ G A+I I+HD + +A + VE E Sbjct: 178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE--E 235 Query: 519 GNFEEYEKDKLSRSSRVL 536 G EE K+ +R L Sbjct: 236 GPVEEIFKNPKHPYTRGL 253 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 78.7 bits (194), Expect = 3e-15 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 47/220 (21%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------AWLATGFTVGY 73 L DI+ Y ++GI+G NGAGKST+L+++AGI K +G+ A L G+ Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL-IELGAGF 100 Query: 74 LPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133 +P+L T +ENI L++ + K +E K+ +II+ L D Sbjct: 101 ---DPEL----TGRENI------------YLRGLILGLTRKEIDE--KVDEIIEFAELGD 139 Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193 + P + + S G R+A PD+LLLDE DA Sbjct: 140 F----------IDQP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 Query: 194 WMEKYLREY---SGAVLMVTHDRYFLDNVTNWILEVDRGK 230 + L E + +++V+HD + + + ++ G+ Sbjct: 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQ 224 Score = 71.4 bits (175), Expect = 6e-13 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 12/210 (5%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392 + ++SF++ G VG+IG NGAGK+TL +++ G P SG + V V + + + Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV--APLIELGAGF 100 Query: 393 EAEKTVWEDISGGDDIVKLNGHEINSRA-YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK 451 + E T E+I I+ L EI+ + F G Q + + S G R+ + Sbjct: 101 DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSV 160 Query: 452 ILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGCAVIISHDRMFLDRLATHILAF 508 +++LLDE D + L V++SHD + + + Sbjct: 161 ATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL 220 Query: 509 EGNGHVEWFEGNFEE----YEKDKLSRSSR 534 E +G + EG+ EE YE+D R S Sbjct: 221 E-HGQIR-MEGSPEEVIPAYEEDLADRLSL 248 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 78.2 bits (193), Expect = 5e-15 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 16/164 (9%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E + +S Y + +S ++ G IV ++G NGAGKTTL + + G P SG I Sbjct: 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF 62 Query: 377 -GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS--RAYC 422 GE + ++YV + R TV E++ G + + Y Sbjct: 63 DGEDITGLPPHERARLGIAYVPEGRRIF-PRLTVEENLLLGAYARRDKEAQERDLEEVY- 120 Query: 423 SAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 F + QR G+LSGG++ + +A+ L S ++LLDEP+ Sbjct: 121 ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164 Score = 74.7 bits (184), Expect = 6e-14 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 45/221 (20%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 LS +G + L ++L + +LG NGAGK+T+L+ + G+ + +G Sbjct: 8 NLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI 67 Query: 67 TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 TG + Y+P+ ++ TV+EN++ G A R E E+ E Sbjct: 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG-----AYARRDKEAQERDLEEVYEL 122 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 +L++ + + +LSGGE++ +A+ + L+S P LL Sbjct: 123 FPRLKERRNQRA------------------------GTLSGGEQQMLAIARALMSRPKLL 158 Query: 179 LLDEPTNHLD---AETIAWMEKYLREYSG-AVLMVTHDRYF 215 LLDEP+ L E I K LR+ G +L+V + F Sbjct: 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF 199 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 77.6 bits (191), Expect = 8e-15 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ G+S S+ +++LSF + PG + +IGPNGAGKTTL ++TG P G + Sbjct: 5 ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64 Query: 377 GETVCLSYVDQSR----------------------DSLE----AEKTVWEDISGGDDIVK 410 L+ + + R ++LE +K+V+ + + Sbjct: 65 DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA-----R 119 Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 L E A G ++ + LS GQ+ + + +L ++LLDEP + Sbjct: 120 LRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179 Query: 471 TETLSALEDALENFAG-CAVI-ISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKD 527 + L++ AG +++ + HD F+ +A + G V EG+ +E + D Sbjct: 180 DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLH-EGSV-LAEGSLDEVQND 236 Score = 65.7 bits (160), Expect = 3e-11 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 36/226 (15%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 I ++ G+S FG K L+D++ S P ++GPNGAGK+T++ ++ G + GE Sbjct: 5 ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64 Query: 66 ATGFTVGYLP-------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112 + LP Q+P + + TV+EN+ + +++ ++ Sbjct: 65 DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASL------FA 118 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 EE ++ +++ + GL D A LS G+K+ + + LL Sbjct: 119 RLRAEERRRIDELLATIGLGDER----------DRLA-----ALLSHGQKQWLEIGMLLA 163 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFL 216 P LLLLDEP + + L+ +G ++L+V HD F+ Sbjct: 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV 209 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 77.4 bits (191), Expect = 8e-15 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 +E + ++ Y ++ +S +P G IV ++G NGAGKTTL + + G P SG+I Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 Query: 377 GETVC-----------LSYVDQSRDSLEAEKTVWEDI-SGGDDIVKLNGHEINSRAYCSA 424 G + + YV + R + E TV E++ G + R Y Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRR-IFPELTVEENLLLGAYARRRAKRKARLERVY-EL 118 Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 F ++Q G+LSGG++ + +A+ L S ++LLDEP+ Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 Score = 76.3 bits (188), Expect = 2e-14 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 55/219 (25%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 L+ +G ++L ++L+ + +LG NGAGK+T+L+ + G+ +G Sbjct: 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI 64 Query: 67 TGFT--------VGYLPQEPQLDLSKTVKENIIEGV-----AHKQAILDRYNELMMNYSE 113 TG +GY+P+ ++ TV+EN++ G A ++A L+R EL Sbjct: 65 TGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF----- 119 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173 +L++ +LSGGE++ +A+ + L+S Sbjct: 120 ------PRLKERRKQLA------------------------GTLSGGEQQMLAIARALMS 149 Query: 174 SPDLLLLDEPTNHLD---AETIAWMEKYLREYSGAVLMV 209 P LLLLDEP+ L E I + LR+ +L+V Sbjct: 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 77.6 bits (191), Expect = 9e-15 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 35/183 (19%) Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 + +S SY ++ ++ NLS +L G + ++G +G+GK+TL ++LTGD P G I Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR 435 + + +N R Y F+ + Sbjct: 61 LDGVPVSDLEKALSSLISV---------------------LNQRPYL--FD---TTLRNN 94 Query: 436 IGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVI 490 +G SGG+R R+ LA+IL ++LLDEPT LD T LS + + L++ + Sbjct: 95 LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD--KTLIW 152 Query: 491 ISH 493 I+H Sbjct: 153 ITH 155 Score = 66.4 bits (162), Expect = 2e-11 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 63/218 (28%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77 ++VL +++L KI +LG +G+GKST+L+++ G K GE L Sbjct: 14 EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI---------TLDGV 64 Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 P DL K + I V +++ L ++ + N Sbjct: 65 PVSDLEKALSSLI--SVLNQRPYL--FDTTLRN--------------------------- 93 Query: 138 VQVAIESLHCPADGLNI-TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET----I 192 N+ SGGE++R+AL ++LL ++LLDEPT LD T + Sbjct: 94 ---------------NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138 Query: 193 AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 + + + L++ + ++ +TH ++++ + IL ++ GK Sbjct: 139 SLIFEVLKDKT--LIWITHHLTGIEHM-DKILFLENGK 173 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 77.2 bits (190), Expect = 1e-14 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 23/225 (10%) Query: 318 IEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + ++ SY+ + ++ +++F + PG V ++GP GAGKTTL +L P G I + Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 Query: 377 GETVCLSYVDQS---------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF 427 +S +D+ T+ E+I G + I + A +F Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNAT-DEEVIEAAKEAGAHDF 121 Query: 428 -----KGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480 G D + G+LS G+R + +A+ + +++LDE T+++DTET +++A Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181 Query: 481 LENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 LE ++II+H R+ + A IL + +E EG +E Sbjct: 182 LEKLMKGRTSIIIAH-RLSTIKNADKILVLDDGKIIE--EGTHDE 223 Score = 72.1 bits (177), Expect = 4e-13 Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 56/248 (22%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRI-------------MAGIDKEYNGEAWL 65 K VL DIN S P + I+GP GAGK+T++ + + GID L Sbjct: 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA----K 121 + G + Q+ L S T+ ENI R + E A Sbjct: 76 RSMI--GVVLQDTFL-FSGTIMENI------------RLGR---PNATDEEVIEAAKEAG 117 Query: 122 LQDIIDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 D I G +T + G N +LS GE++ +A+ + +L P +L+ Sbjct: 118 AHDFIMKLPNG---YDTVL------------GENGGNLSQGERQLLAIARAMLRDPKILI 162 Query: 180 LDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGN 237 LDE T+++D ET +++ L + +++ H + N IL +D GK I +G Sbjct: 163 LDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADK-ILVLDDGK-IIEEGT 220 Query: 238 YSAYLQMK 245 + L K Sbjct: 221 HDELLAKK 228 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 76.9 bits (189), Expect = 1e-14 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 32/229 (13%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ G+SK Y ++SF L PG ++G++G +G+GKTTL + ++G +PD+GT+ Sbjct: 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65 Query: 377 GETVCLSYVDQSRDSLEAE-----KTVW------------EDISGGDDIVKL-----NGH 414 D S EAE +T W +S G +I + H Sbjct: 66 -RMRDGQPRDLYTMS-EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123 Query: 415 EINSRAYCSAFNFKGGDQQQRIGSL----SGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 N RA + + RI L SGG + R+ +A+ L + ++ +DEPT LD Sbjct: 124 YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183 Query: 471 TETLSALEDALE----NFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 + L D L VI++HD LA ++ + VE Sbjct: 184 VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 Score = 60.0 bits (145), Expect = 2e-09 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 27/225 (12%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 M K + ++GLSK++G K D++ YP +GI+G +G+GK+T+L+ ++G Sbjct: 1 MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISG------ 54 Query: 61 GEAWLATGFTVGYLPQEPQ----LDLSKTVKENIIE---GVAHKQAILDRYNELMMNYSE 113 TV Y ++ Q +S+ + ++ G H+ + L M S Sbjct: 55 --RLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR----DGLRMQVSA 108 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLL 171 I + I ++ ++ E Q +E + D ++ + SGG ++R+ + + L Sbjct: 109 GGN--IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL 166 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHD 212 ++ P L+ +DEPT LD A + LR E AV++VTHD Sbjct: 167 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 77.0 bits (189), Expect = 1e-14 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 36/229 (15%) Query: 300 PGNAQIIIPVGKRLGHVVIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTT 358 PG + + GK IE ++ +Y+ ++ ++SF + PG V ++GP+GAGK+T Sbjct: 526 PGAPPLKVTQGK------IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKST 579 Query: 359 LFRMLTGDESPDSGTIHVGETVCLSYVDQS---------RDSLEAEKTVWEDI-----SG 404 + R+L +SG+I + + S +D++ T+ +I S Sbjct: 580 IMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSA 639 Query: 405 GDDIV--KLNGHEINSR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460 ++ V +I+ R + +N + G++ + LSGG++ RV +A+ + ++I Sbjct: 640 SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK---LSGGEKQRVAIARTILKAPSII 696 Query: 461 LLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILA 507 LLDE T+ LDT T A++ AL ++++H RL+T + A Sbjct: 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAH------RLSTIVNA 739 Score = 66.2 bits (161), Expect = 2e-11 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 46/260 (17%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGIDKEYNGEAWL 65 K VL DI+ + P + ++GP+GAGKSTI+R++ G D ++ L Sbjct: 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 + ++G +PQ+ L + T+ NI RY + + S + AK I Sbjct: 611 RS--SIGVVPQDTVL-FNDTILYNI------------RYAKP--SASNEEVYAAAKAAQI 653 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 D + +V L LSGGEK+RVA+ + +L +P ++LLDE T+ Sbjct: 654 HDRILQFPEGYNTRVGERGL----------KLSGGEKQRVAIARTILKAPSIILLDEATS 703 Query: 186 HLDAETIAWMEKYL-REYSGAVLMVTHDRYFLDNVTN--WILEVDRGKGIPYQGNYSAYL 242 LD T ++ L R + +V R L + N IL + G+ I +G + L Sbjct: 704 ALDTNTERAIQAALARLCANRTTIVVAHR--LSTIVNADLILVISNGR-IVERGRHEELL 760 Query: 243 QMKAKRMAQENREEISRQKA 262 + A + + + K Sbjct: 761 KRDGGAYADMWQAQQAMGKT 780 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 76.5 bits (188), Expect = 2e-14 Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 23/191 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +EA ++ + R L LSF L G + V GPNG+GKTTL R+L G P +G + + Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK--------- 428 +D RDS+ A ++ + I N R + A + Sbjct: 61 GGP----LDFQRDSI-ARGLLY--LGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALAR 112 Query: 429 ---GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485 G + + + LS GQ+ RV LA++L SG + +LDEPT LD ++ +A+ Sbjct: 113 VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172 Query: 486 ---GCAVIISH 493 G V+ +H Sbjct: 173 ARGGMVVLTTH 183 Score = 73.8 bits (181), Expect = 1e-13 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 30/179 (16%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96 + GPNG+GK+T+LRI+AG+ G L P ++ ++ + H Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRV---------LLNGGPLDFQRDSIARGLLY-LGH 80 Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV-AIESLHCPADGLNIT 155 I + E + + + + V + E Sbjct: 81 APGIKTTLS---------VLENLRFWHADHSDEQVEEALARVGLNGFEDRPV-------A 124 Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTH 211 LS G++RRVAL +LLLS L +LDEPT LD +A + + + G V++ TH Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 75.6 bits (186), Expect = 3e-14 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 28/228 (12%) Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +E K ++ Y ++ ++S +P G V ++GP+G+GK+TL ++ DSG I Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 Query: 376 V-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 + G V + V Q D TV E+I+ G E +RA A Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQ--DVFLFNDTVAENIAYGRPGATREEVEEAARAAN-A 117 Query: 425 FNF-----KGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 F +G D +R LSGGQR R+ +A+ L +++LDE T+ LDTE+ + Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 Query: 478 EDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 + ALE +I+H R+ A I+ E VE G EE Sbjct: 178 QAALERLMKNRTTFVIAH-RLSTIENADRIVVLEDGKIVE--RGTHEE 222 Score = 60.6 bits (147), Expect = 1e-09 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 52/192 (27%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GIDKEYNGEAWL 65 VL DI+L + ++GP+G+GKST++ ++ G D A L Sbjct: 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL 74 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI------ 119 +G + Q+ L + TV ENI G T EE+ Sbjct: 75 RR--QIGLVSQDVFL-FNDTVAENIAYGR-----------------PGATREEVEEAARA 114 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 A + I +T + G LSGG+++R+A+ + LL P +L+ Sbjct: 115 ANAHEFIMELPE-GYDTVI------------GERGVKLSGGQRQRIAIARALLKDPPILI 161 Query: 180 LDEPTNHLDAET 191 LDE T+ LD E+ Sbjct: 162 LDEATSALDTES 173 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 75.3 bits (185), Expect = 4e-14 Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 15/195 (7%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386 Y + + +SF + G IVG IGPNGAGKTT ++L+G P SG + V V Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90 Query: 387 QSRDSLEA----EKTVWEDISGGD------DIVKLN-GHEINSRAYCSAFNFKGGDQQQR 435 + + + +W D+ D I L S Sbjct: 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP 150 Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA---GCAVII- 491 + LS GQR R +A L ++ LDEPT LD + + L+ + G V++ Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210 Query: 492 SHDRMFLDRLATHIL 506 SH ++ LA +L Sbjct: 211 SHYMKDIEALARRVL 225 Score = 70.3 bits (172), Expect = 1e-12 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 31/227 (13%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77 + L I+ + +G +GPNGAGK+T L+I++G+ + +GE +A G +P + Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA-----GLVPWK 87 Query: 78 PQLDLSKTVKENIIEG----VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133 + + + ++ G + ++D + L Y +L ++ + L D Sbjct: 88 RRKKFLRRI--GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE---LLD 142 Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA---E 190 LE E L P + LS G++ R + LL P++L LDEPT LD E Sbjct: 143 LE-------ELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 Query: 191 TI-AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236 I ++++Y RE VL+ +H ++ + +L +D+G+ + Y G Sbjct: 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR-LLYDG 236 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 74.8 bits (184), Expect = 5e-14 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 49/228 (21%) Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK--------EYNGEAWL 65 +V G K++L +NL+ I+GPNG+GKST+ + G K ++GE L Sbjct: 12 EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 Query: 66 --------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 G + + Q P I GV + + N E Sbjct: 72 ELSPDERARAGIFLAF--QYPVE----------IPGVTNSDFLRAAMNARR-GARGILPE 118 Query: 118 EIAKLQDIIDSKGLWD--LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 I +L++ + GL + LE V SGGEK+R + +LLL P Sbjct: 119 FIKELKEKAELLGLDEEFLERYVNE---------------GFSGGEKKRNEILQLLLLEP 163 Query: 176 DLLLLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHDRYFLDNVT 220 L +LDEP + LD + + + + LRE VL++TH + LD + Sbjct: 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK 211 Score = 46.3 bits (110), Expect = 2e-05 Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 24/191 (12%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES--PDSGTIHV-GETVC-LSYVDQ 387 ++ ++ + G + ++GPNG+GK+TL + G G I GE + LS ++ Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 Query: 388 SRDSL----------------EAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGD 431 +R + + + G I+ E+ +A + + + Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138 Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG---CA 488 + G SGG++ R + ++L + +LDEP + LD + L + + + Sbjct: 139 RYVNEG-FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGV 197 Query: 489 VIISHDRMFLD 499 +II+H + LD Sbjct: 198 LIITHYQRLLD 208 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 74.5 bits (183), Expect = 7e-14 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 41/234 (17%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE---------YNGEAWLATG 68 ++L+D++L + ILG +G+GK+T+L ++G + +NG+ Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 Query: 69 FT--VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 F V Y+ Q+ L TV+E + Y ++ + ++ K Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETL------------TYTAILRLPRKSSDAIRKKR---- 122 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 + +A+ + G + +SGGE+RRV++ LL P +L+LDEPT+ Sbjct: 123 -----VEDVLLRDLALTRIG----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 Query: 187 LDAETIAWMEKYLREYSG---AVLMVTHD-RYFLDNVTNWILEVDRGKGIPYQG 236 LD+ T + L + + V++ H R L + + IL + G+ I Y G Sbjct: 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE-IVYSG 226 Score = 69.9 bits (171), Expect = 2e-12 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 25/189 (13%) Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG---DESPDSGTIHVGE--- 378 +++++S + G ++ ++G +G+GKTTL ++G SG I Sbjct: 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 Query: 379 -----TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433 C++YV Q D L TV E ++ L +S A + Sbjct: 75 KPDQFQKCVAYVRQD-DILLPGLTVRETLTY---TAILRLPRKSSDAIRKKRVEDVLLRD 130 Query: 434 --------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485 + +SGG+R RV +A L V++LDEPT+ LD+ T L L A Sbjct: 131 LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA 190 Query: 486 --GCAVIIS 492 VI++ Sbjct: 191 RRNRIVILT 199 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 74.0 bits (182), Expect = 9e-14 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 42/191 (21%) Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ 387 + R+L+ +LSF++ PG + + GP+G GK++LFR L G SG I + E L ++ Q Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71 Query: 388 SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRI----GSLSGGQ 443 R Y + +Q I LSGG+ Sbjct: 72 -------------------------------RPYLPLGTLR----EQLIYPWDDVLSGGE 96 Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVI-ISHDRMFLDRLA 502 + R+ A++L + LDE T+ LD E+ L L+ G VI + H R L + Sbjct: 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE-LGITVISVGH-RPSLWKFH 154 Query: 503 THILAFEGNGH 513 +L +G G Sbjct: 155 DRVLDLDGEGG 165 Score = 60.2 bits (146), Expect = 1e-09 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216 LSGGE++R+A +LLL P + LDE T+ LD E+ + + L+E V+ V H R L Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGH-RPSL 150 Query: 217 DNVTNWILEVDRGKGI 232 + +L++D G Sbjct: 151 WKFHDRVLDLDGEGGW 166 Score = 48.6 bits (116), Expect = 4e-06 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77 + +L D++ P ++ I GP+G GKS++ R +AG+ +G + G + +LPQ Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQR 72 Query: 78 PQLDLSKTVKENII 91 P L L T++E +I Sbjct: 73 PYLPLG-TLREQLI 85 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 73.9 bits (181), Expect = 1e-13 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 21/213 (9%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG--------DE 367 ++E+ G+ + +R ++ NL+ ++ PG +V V+G +GAGKTTL RM+ G Sbjct: 382 DILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKY 441 Query: 368 SPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISG--GDDIVKLNGHEINSRAYCSAF 425 PDSG + V + + + + E T+ E + GD + EI +RA S Sbjct: 442 RPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV---EILNRAGLSDA 498 Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDAL 481 +++ LS GQ+ R LAK+L NV+L+DE LD T + + Sbjct: 499 VLY----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 Query: 482 ENFAGCAVIISHDRMFLDRLATHILAFEGNGHV 514 ++++H + L L G G V Sbjct: 555 REAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 Score = 53.1 bits (127), Expect = 2e-07 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 46/209 (22%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 VL ++NL P + ++G +GAGK+T+LR++ G K E Y P ++ Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE---------KYRPDSGKV 448 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 ++ K +I G E + E T I++ L ++ Sbjct: 449 EVPKNTVSALIPG------------EYEPEFGEVT---------ILEH--LRSKTGDLNA 485 Query: 141 AIESLHCPADGLN--------ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192 A+E L+ GL+ + LS G+K R L KLL P++LL+DE HLD T Sbjct: 486 AVEILN--RAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543 Query: 193 AWMEKYL----REYSGAVLMVTHDRYFLD 217 + + + RE +++VTH + Sbjct: 544 VRVARKISELAREAGITLIVVTHRPEVGN 572 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 73.7 bits (181), Expect = 1e-13 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 44/210 (20%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGID-KEYNGEA 63 + VL D++ + K+ I+GP+G+GKSTILR++ G D +E ++ Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS 72 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 +G +PQ+ L + T+ NI RY + +++ E AK Sbjct: 73 LRRA---IGVVPQDTVL-FNDTIGYNI------------RYGRP--DATDEEVIEAAKAA 114 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 I D + + V L LSGGEK+RVA+ + +L +P +LLLDE Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLK----------LSGGEKQRVAIARAILKNPPILLLDEA 164 Query: 184 TNHLDAETIAWMEKYLREYSG--AVLMVTH 211 T+ LD T ++ LR+ S +++ H Sbjct: 165 TSALDTHTEREIQAALRDVSKGRTTIVIAH 194 Score = 73.3 bits (180), Expect = 1e-13 Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 26/198 (13%) Query: 318 IEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + ++ +Y+ R ++ ++SF +P G V ++GP+G+GK+T+ R+L SG+I + Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 Query: 377 G----ETVCLSYVDQS-----RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA--- 424 V L + ++ +D++ T+ +I G + + + A Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYG----RPDATDEEVIEAAKAAQI 116 Query: 425 ----FNFKGGDQQ---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 F G +R LSGG++ RV +A+ + ++LLDE T+ LDT T + Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176 Query: 478 EDALENFAG--CAVIISH 493 + AL + + ++I+H Sbjct: 177 QAALRDVSKGRTTIVIAH 194 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 73.2 bits (180), Expect = 1e-13 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 48/231 (20%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTI----LRIMA---------GIDKEYNGEA 63 VL +I+ S P K+GI+G G+GKS++ R++ G+D G Sbjct: 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLH 74 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 L + ++ +PQ+P L S T++ N LD + E ++EE+ Sbjct: 75 DLRSRISI--IPQDPVL-FSGTIRSN-----------LDPFGE-------YSDEEL---W 110 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 ++ GL + + ++++ G N LS G+++ + L + LL +L+LDE Sbjct: 111 QALERVGLKEFVESLPGGLDTVVE-EGGEN---LSVGQRQLLCLARALLRKSKILVLDEA 166 Query: 184 TNHLDAETIAWMEKYLREY--SGAVLMVTHDRYFLDNVTNW--ILEVDRGK 230 T +D ET A ++K +RE VL + H LD + + IL +D+G+ Sbjct: 167 TASVDPETDALIQKTIREAFKDCTVLTIAHR---LDTIIDSDRILVLDKGR 214 Score = 68.6 bits (168), Expect = 4e-12 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 32/201 (15%) Query: 318 IEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRMLTGDESPDS 371 IE K +S Y L ++ N+SF + PG VG++G G+GK++ LFR++ S Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58 Query: 372 GTIHVGE----TVCLSYVDQS-----RDSLEAEKTVWEDISGGDDIVKLNGHEINS---- 418 G+I + + L + +D + T+ ++ D + + E+ Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115 Query: 419 ---RAYCSAFNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 + + + + G LS GQR + LA+ L +++LDE T +D ET Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 Query: 475 SALEDAL-ENFAGCAVI-ISH 493 + ++ + E F C V+ I+H Sbjct: 176 ALIQKTIREAFKDCTVLTIAH 196 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 72.6 bits (178), Expect = 2e-13 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 39/202 (19%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ATGFTVGYL 74 L+D++L+ + +LGP+G GK+T+L ++AG G L G G + Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79 Query: 75 PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134 Q L V +N+ G+ + + +++ E L + GL Sbjct: 80 FQNEALLPWLNVIDNVAFGLQLRG----------IEKAQRREIAHQMLALV----GLEGA 125 Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW 194 E + I LSGG ++RV + + L P LLLLDEP LDA T Sbjct: 126 EHKY---------------IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170 Query: 195 MEKYL----REYSGAVLMVTHD 212 M++ L +E VL++THD Sbjct: 171 MQELLLDLWQETGKQVLLITHD 192 Score = 64.1 bits (156), Expect = 1e-10 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 14/173 (8%) Query: 320 AKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 +S SY R ++++S + G +V V+GP+G GKTTL ++ G +P G+I + Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65 Query: 377 GETVCLSYVDQS----RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK---- 428 G + ++ ++L V ++++ G ++L G E R + Sbjct: 66 GRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQMLALVGL 122 Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 G + + I LSGG R RV +A+ L ++LLDEP LD T +++ L Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 72.7 bits (178), Expect = 3e-13 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 34/246 (13%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 ++ + P + I GPNG GKS++ RI+ G+ YNG + + Y+PQ P + Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYM 556 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI---AKLQDIIDSKGLWDLETE 137 T+++ II + + + Y+++ E I L+ I+ +G WD Sbjct: 557 SGG-TLRDQII----YPDSSEQMKRK---GYTDQDLEAILDIVHLEHILQREGGWDAV-- 606 Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197 D ++ LSGGEK+R+ + ++ P LLDE T+ + + + + Sbjct: 607 -----------RDWKDV--LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQ 653 Query: 198 YLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYS-AYLQMKAKRMAQENREE 256 ++ ++L +TH R L +LE D +G + L + + +E ++E Sbjct: 654 AAKDAGISLLSITH-RPSLWKYHTHLLEFDG------EGGWQFRALNTEERLSIEEEKQE 706 Query: 257 ISRQKA 262 + Q A Sbjct: 707 LESQLA 712 Score = 57.3 bits (138), Expect = 9e-09 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 30/204 (14%) Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ 387 +L+ L+F++ PG + + GPNG GK++LFR+L G +G + + + Y+ Q Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQ 552 Query: 388 -----------------SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGG 430 S + ++ + +D+ DIV L I R +GG Sbjct: 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHL--EHILQR--------EGG 602 Query: 431 DQQQRIGS--LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCA 488 R LSGG++ R+ +A++ LLDE T+ + + + A ++ Sbjct: 603 WDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISL 662 Query: 489 VIISHDRMFLDRLATHILAFEGNG 512 + I+H R L + TH+L F+G G Sbjct: 663 LSITH-RPSLWKYHTHLLEFDGEG 685 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 72.6 bits (178), Expect = 3e-13 Identities = 54/219 (24%), Positives = 109/219 (49%), Gaps = 24/219 (10%) Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 I + + Y + +++DN+S ++ PG +VG++G +G+GK+TL +++ P++G + Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 Query: 376 VGETVCLSYVDQS----------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRA-YCSA 424 V + L+ D + ++++ +++ ++I+ D + + + A A Sbjct: 61 V-DGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSM--ERVIEAAKLAGA 117 Query: 425 FNF-----KGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 +F +G D ++ LSGGQR R+ +A+ L +++ DE T+ LD E+ A+ Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177 Query: 478 EDALENF-AGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 + + AG VII R+ + A I+ E VE Sbjct: 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 Score = 57.6 bits (139), Expect = 8e-09 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 40/184 (21%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AWLAT 67 +LD+I+L P +GI+G +G+GKST+ +++ NG AWL Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 VG + QE L ++++++NI + M S + E AKL Sbjct: 77 --QVGVVLQENVL-FNRSIRDNIALA-----------DPGM---SMERVIEAAKL----- 114 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 G D +E+ +++ G LSGG+++R+A+ + L+ +P +L+ DE T+ L Sbjct: 115 -AGAHDFISELPEGYDTIV----GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169 Query: 188 DAET 191 D E+ Sbjct: 170 DYES 173 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 71.5 bits (175), Expect = 5e-13 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 56/227 (24%) Query: 24 DINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDK------EYNGEAWLATGFTV----- 71 D N + P I + GP+G+GK++++ ++AG+ + E NG + + Sbjct: 16 DANFTL-PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74 Query: 72 ----GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 GY+ Q+ +L TV+ N+ RY M S + A+ ++ Sbjct: 75 KRRIGYVFQDARLFPHYTVRGNL------------RY---GMWKSMR-----AQFDQLVA 114 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 G+ L P +LSGGEK+RVA+ + LL++P+LLL+DEP L Sbjct: 115 LLGIEHLLDRY---------PG------TLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 Query: 188 D----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 D E + ++E+ E + +L V+H + + + ++ ++ GK Sbjct: 160 DLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGK 206 Score = 65.3 bits (159), Expect = 4e-11 Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 50/236 (21%) Query: 305 IIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364 + + +RLG+ ++A +F LP GI + GP+G+GKT+L M+ Sbjct: 2 LELNFRQRLGNFALDA----------------NFTLPARGITALFGPSGSGKTSLINMIA 45 Query: 365 GDESPDSGTIHVGETVCLSYVDQSRD-SLEAEKT----VWEDISGGDDIVKLNGHEINSR 419 G PD G I + V VD + L EK V++D +L H Sbjct: 46 GLTRPDEGRIELNGRV---LVDAEKGIFLPPEKRRIGYVFQD-------ARLFPHYTVRG 95 Query: 420 AYCSAFNFKGGDQ--------------QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465 Q + G+LSGG++ RV + + L + ++L+DEP Sbjct: 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155 Query: 466 TNDLD----TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517 LD E L LE + + +SH + RLA ++ E NG V+ Sbjct: 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLE-NGKVKAS 210 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 71.1 bits (174), Expect = 6e-13 Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 46/212 (21%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI---DKEYNGEAWL-------- 65 +L ++N + + ++GP+G GKST+L M G GE WL Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72 Query: 66 -ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 A +G L Q+ L +V +N++ + + K Sbjct: 73 PAAQRQIGILFQDALLFPHLSVGQNLLFALPA---------------TLKGNARRNAANA 117 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 ++ GL + H +LSGG++ RVAL + LL+ P LLLDEP Sbjct: 118 ALERSGL----------DGAFHQDPA-----TLSGGQRARVALLRALLAQPKALLLDEPF 162 Query: 185 NHLDA----ETIAWMEKYLREYSGAVLMVTHD 212 + LD + W+ +R + VTHD Sbjct: 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 Score = 60.7 bits (147), Expect = 9e-10 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 23/193 (11%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD---SGTIHVG 377 K +S L+ N++F + G IV ++GP+G GK+TL + G + +G + + Sbjct: 6 KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65 Query: 378 ETVCLSYVDQSRDS--LEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR 435 E R L + ++ +S G +++ + A +A N +R Sbjct: 66 EQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN----AALER 121 Query: 436 IG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485 G +LSGGQR RV L + L + +LLDEP + LD + + Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 Query: 486 GCA----VIISHD 494 A V ++HD Sbjct: 182 RAAGIPTVQVTHD 194 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 70.3 bits (172), Expect = 1e-12 Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 55/250 (22%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-- 65 + L K +G +VL ++L I I+G +G+GKST LR + ++K G + Sbjct: 8 EVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNG 67 Query: 66 --------ATGFTVGYLPQEPQLDLSK--------------TVKENIIEGVAHKQAILDR 103 G ++ Q ++ TV EN+IE H + Sbjct: 68 EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV--- 124 Query: 104 YNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR 163 E I + + + G+ + PA LSGG+++ Sbjct: 125 ----------SKAEAIERAEKYLAKVGIAEKADAY---------PA------HLSGGQQQ 159 Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR---EYSGAVLMVTHDRYFLDNVT 220 RVA+ + L P+++L DEPT+ LD E + + K ++ E +++VTH+ F +V+ Sbjct: 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS 219 Query: 221 NWILEVDRGK 230 + ++ + +GK Sbjct: 220 SHVIFLHQGK 229 Score = 63.8 bits (155), Expect = 1e-10 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 35/229 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E + + K Y + ++ +S + G ++ +IG +G+GK+T R + E P +G+I V Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66 Query: 378 ETVC------------------------LSYVDQSRDSLEAEKTVWED-ISGGDDIVKLN 412 L V Q + L + TV E+ I ++ ++ Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFN-LWSHMTVLENVIEAPVHVLGVS 125 Query: 413 GHEINSRAYCSAFNFKGGDQQQR---IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469 E RA + K G ++ LSGGQ+ RV +A+ L V+L DEPT+ L Sbjct: 126 KAEAIERA--EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183 Query: 470 DTETLSALEDALENFAG---CAVIISHDRMFLDRLATHILAFEGNGHVE 515 D E + + +++ A V+++H+ F +++H++ F G +E Sbjct: 184 DPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI-FLHQGKIE 231 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 69.6 bits (170), Expect = 2e-12 Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 22/210 (10%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG---YLPQE 77 ++++++L + I GP+G GK+++LR++ G+ G+ T +LPQ Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 P + L T+++ +I + D ++ + E +L +++ +G D + + Sbjct: 510 PYMTLG-TLRDQVI----YPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVD 564 Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197 + LS GE++R+A +L P +LDE T+ + + + + Sbjct: 565 WDW-------------MDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYR 611 Query: 198 YLREYSGAVLMVTHDRYFLDNVTNWILEVD 227 RE + V H R L +++L +D Sbjct: 612 KCREMGITFISVGH-RKSLWKFHDYVLRMD 640 Score = 54.9 bits (132), Expect = 6e-08 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 39/211 (18%) Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH---VGETVCLSY 384 N LLI+NLS ++P G + + GP+G GKT+L R+L G G + G L + Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505 Query: 385 VDQS--------RDSL---EAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433 + Q RD + + + + +DI++ N + G Sbjct: 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR------------ILENVQLGHLL 553 Query: 434 QRIGS------------LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 +R G LS G++ R+ A++ +LDE T+ + + AL Sbjct: 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC 613 Query: 482 ENFAGCAVIISHDRMFLDRLATHILAFEGNG 512 + + H R L + ++L +G G Sbjct: 614 REMGITFISVGH-RKSLWKFHDYVLRMDGRG 643 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 67.3 bits (164), Expect = 1e-11 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 22/201 (10%) Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ- 387 D L++ ++SF L PG + ++GP+G+GK+T+ +L P G + + +S + Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK-PISQYEHK 84 Query: 388 ---------SRDSLEAEKTVWEDISGG-----DDIVKLNGHEINSRAYCSAFNFKGGDQQ 433 ++ + +++ ++I+ G + VK + ++ ++ S G D + Sbjct: 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELA-SGYDTE 143 Query: 434 --QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE--NFAGCAV 489 ++ LSGGQ+ RV +A+ L V++LDE T+ LD E+ ++ AL + Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203 Query: 490 IISHDRMFLDRLATHILAFEG 510 +I+H R+ A IL +G Sbjct: 204 VIAH-RLSTVERADQILVLDG 223 Score = 66.1 bits (161), Expect = 2e-11 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 38/204 (18%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----ATGFTVGYL-- 74 VL D++ + +P ++GP+G+GKST++ ++ + G+ L + + YL Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 Query: 75 -----PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129 QEP L ++++++NI G+ + E I++L D Sbjct: 89 KVSLVGQEPVL-FARSLQDNIAYGLQ--SCSFECVKEAAQKAH--AHSFISELASGYD-- 141 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 TEV G + LSGG+K+RVA+ + L+ +P +L+LDE T+ LDA Sbjct: 142 ------TEV------------GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183 Query: 190 ETIAWMEKYLREY--SGAVLMVTH 211 E+ +++ L ++ VL++ H Sbjct: 184 ESEQQVQQALYDWPERRTVLVIAH 207 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 67.2 bits (164), Expect = 1e-11 Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 44/214 (20%) Query: 317 VIEAKGISKSYN-----DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371 +I +K++ ++ ++ LS ++ G V VIG NGAGK+TL + GD P S Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60 Query: 372 GTIHVGET-----------VCLSYVDQ-SRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419 G I + L+ V Q E T+ E+++ + + G R Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA----LAESRG---KKR 113 Query: 420 AYCSAFNFKGGDQ----------------QQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463 SA N + RIG LSGGQR + L ++LLD Sbjct: 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 Query: 464 EPTNDLDTET----LSALEDALENFAGCAVIISH 493 E T LD +T + +E ++++H Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207 Score = 62.6 bits (152), Expect = 2e-10 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 29/216 (13%) Query: 11 GLSKVFG-----SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 +K F K+ L+ ++L + ++G NGAGKST+L +AG K +G+ + Sbjct: 6 NATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILI 65 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEG------VAHKQAILDRYNELMMNYSEKTEEEI 119 G V + +L V ++ + G + A+ + + S E Sbjct: 66 D-GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRR 124 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 + ++ + GL LE + I LSGG+++ ++L L P +LL Sbjct: 125 SSFRERLARLGL-GLENRL------------SDRIGLLSGGQRQALSLLMATLHPPKILL 171 Query: 180 LDEPTNHLDAETIAWM----EKYLREYSGAVLMVTH 211 LDE T LD +T ++ K + E+ LMVTH Sbjct: 172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 67.1 bits (164), Expect = 1e-11 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 36/164 (21%) Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD---SGTIHVG-- 377 K + ++ + S + PG +V V+G G+G +TL + L + G IH Sbjct: 13 TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI 72 Query: 378 -----ETVC---LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 + YV + D TV E + D ++ G+E Sbjct: 73 PYKEFAEKYPGEIIYVSEE-DVHFPTLTVRETL---DFALRCKGNEF------------- 115 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 + +SGG+R RV +A+ L S +V+ D T LD+ T Sbjct: 116 ------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 Score = 47.5 bits (113), Expect = 9e-06 Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 43/200 (21%) Query: 13 SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG 72 K +L D + P + +LG G+G ST+L+ +A + Sbjct: 14 GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS----------- 62 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 +EG H YN K E + I S+ Sbjct: 63 ------------------VEGDIH-------YN----GIPYKEFAEKYPGEIIYVSEEDV 93 Query: 133 DLET-EVQVAIE-SLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 T V+ ++ +L C + + +SGGE++RV++ + L+S +L D T LD+ Sbjct: 94 HFPTLTVRETLDFALRCKGNE-FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 Query: 191 TIAWMEKYLREYSGAVLMVT 210 T + K +R + + T Sbjct: 153 TALEILKCIRTMADVLKTTT 172 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 66.5 bits (162), Expect = 2e-11 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 16/196 (8%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR----- 389 + G I ++GP+G+GK+TL ++ G E+P SG + + V ++ + Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING-VDVTAAPPADRPVSM 74 Query: 390 ----DSLEAEKTVWEDIS-GGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQR 444 ++L A TV +++ G +KL + + A G +++ G LSGG+R Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGER 134 Query: 445 GRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHDRMFLDR 500 RV LA++L V+LLDEP LD E L + D ++++H R Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 Query: 501 LATHILAFEGNGHVEW 516 LA ++ F NG + Sbjct: 195 LAQRVV-FLDNGRIAA 209 Score = 64.6 bits (157), Expect = 7e-11 Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 45/227 (19%) Query: 24 DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP-------- 75 +L+F I+GP+G+GKST+L ++AG + +G L G V P Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPADRPVSM 74 Query: 76 --QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133 QE L TV++N+ G++ + T E+ ++ + GL Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKL--------------TAEDRQAIEVALARVGLAG 120 Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----A 189 LE + LSGGE++RVAL ++L+ +LLLDEP LD A Sbjct: 121 LEKRLP---------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 Query: 190 ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236 E + + E VLMVTH + ++ +D G+ I QG Sbjct: 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR-IAAQG 211 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 65.1 bits (159), Expect = 5e-11 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 52/212 (24%) Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 G V+E +G+S + + ++SF++ G IVG+ G G G+T L L G P SG Sbjct: 1 GEPVLEVRGLSV----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56 Query: 374 IHV-GETVC-----------LSYV--DQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419 I + G+ V ++YV D+ R+ L + +V E+I+ Sbjct: 57 ITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS------------- 103 Query: 420 AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 LSGG + +V LA+ L V++LDEPT +D + + Sbjct: 104 ------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145 Query: 480 ALENFA--GCAVI-ISHDRMFLDRLATHILAF 508 + A G AV+ IS + L L IL Sbjct: 146 LIRELADAGKAVLLISSELDELLGLCDRILVM 177 Score = 51.6 bits (124), Expect = 6e-07 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 51/216 (23%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 K + D++ +GI G G G++ + + G+ +GE L G V Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD-GKPVTR----- 66 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNE-LMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 ++ ++ I G+A+ DR E L+++ S + ++ Sbjct: 67 -----RSPRDAIRAGIAYVPE--DRKREGLVLDLS------------VAEN--------- 98 Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197 +A+ SL LSGG +++V L + L P +L+LDEPT +D A + + Sbjct: 99 --IALSSL-----------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145 Query: 198 YLREYS---GAVLMVTHDRYFLDNVTNWILEVDRGK 230 +RE + AVL+++ + L + + IL + G+ Sbjct: 146 LIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 64.6 bits (157), Expect = 7e-11 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 30/206 (14%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC---------- 381 +++ S + G I ++G +G+GK+TL R+L P G I V G+ + Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103 Query: 382 ----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQQR 435 +S V QS +L +TV E+++ G ++ + E RA A G G + Sbjct: 104 RRKKISMVFQSF-ALLPHRTVLENVAFGLEVQGVPKAEREERAL-EALELVGLEGYADKY 161 Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVII 491 LSGG + RV LA+ L + +++L+DE + LD + ++D L V I Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI 221 Query: 492 SHDRMFLD---RLATHILAFEGNGHV 514 +HD LD R+ I A +G + Sbjct: 222 THD---LDEALRIGDRI-AIMKDGEI 243 Score = 48.4 bits (115), Expect = 5e-06 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 34/203 (16%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81 ++D +L I+G +G+GKST++R++ + + GE + E Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAE---- 99 Query: 82 LSKTVKENIIEGVAHKQAILDRYNEL--------MMNYSEKTEEEIAKLQDIIDSKGLWD 133 + ++ I V A+L L + + EE A + ++ GL Sbjct: 100 -LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA--LEALELVGLEG 156 Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193 + LSGG ++RV L + L + PD+LL+DE + LD Sbjct: 157 YADKY---------------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 Query: 194 WMEKYL----REYSGAVLMVTHD 212 M+ L + ++ +THD Sbjct: 202 EMQDELLELQAKLKKTIVFITHD 224 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 64.1 bits (156), Expect = 1e-10 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 37/215 (17%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR----MLTGDESPDSGT 373 + + I +S+++R I+ S + ++G NGAGKTT+ LTG+ P+S Sbjct: 4 LSIRNI-RSFHERSEIEFFS------PLTLIVGQNGAGKTTIIEALKYALTGELPPNSKG 56 Query: 374 IHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433 + + + K +E+ +G + + + + +C G+ Sbjct: 57 GAHDPKLI-----REGEVRAQVKLAFENANGKKYTITRSLAILENVIFC-----HQGESN 106 Query: 434 ----QRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLS-ALEDALE 482 G SGG++ R+ LA+ S ++ LDEPT +LD E + +L + +E Sbjct: 107 WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIE 166 Query: 483 NFAGCAV----IISHDRMFLDRLATHILAFEGNGH 513 +I+HD +D A HI E +G Sbjct: 167 ERKSQKNFQLIVITHDEELVDA-ADHIYRVEKDGR 200 Score = 52.9 bits (127), Expect = 2e-07 Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 62/225 (27%) Query: 28 SFYPDAKIG-------ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 SF+ ++I I+G NGAGK+TI+ EA G LP P Sbjct: 11 SFHERSEIEFFSPLTLIVGQNGAGKTTII------------EALKYALT--GELP--PNS 54 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 G AH ++ E KL + + + + + Sbjct: 55 K-----------GGAHDPKLI----------REGEVRAQVKLAFENANGKKYTITRSLAI 93 Query: 141 AIESLHCPADGLN------ITSLSGGEKR------RVALCKLLLSSPDLLLLDEPTNHLD 188 + C N SGGEK R+AL + S+ +L LDEPT +LD Sbjct: 94 LENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153 Query: 189 AETIAW-----MEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDR 228 E I +E+ + + ++++THD +D + I V++ Sbjct: 154 EENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK 197 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 63.7 bits (155), Expect = 1e-10 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 30/218 (13%) Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357 ++P A ++ GK + I K + ++++S + G I ++G +G+GK+ Sbjct: 12 KNPQKAFKLLAKGKS-------KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKS 64 Query: 358 TLFRMLTGDESPDSGTIHV-GETVC--------------LSYVDQSRDSLEAEKTVWEDI 402 TL R + P SG + + G+ + +S V QS +L +TV E++ Sbjct: 65 TLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF-ALLPHRTVLENV 123 Query: 403 SGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460 + G ++ + E RA A G G + + LSGG + RV LA+ L +++ Sbjct: 124 AFGLEVQGVPRAEREERAA-EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 Query: 461 LLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494 L+DE + LD E L V I+HD Sbjct: 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 Score = 47.9 bits (114), Expect = 7e-06 Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 44/218 (20%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 + K G ++D++L I+G +G+GKST+LR + + + +G+ + Sbjct: 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ--- 86 Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS-------------EKTEEE 118 D++ ++ + E K +++ + L+ + + E Sbjct: 87 ---------DIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAER 137 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 + + ++ GL E + LSGG ++RV L + L PD+L Sbjct: 138 EERAAEALELVGLEGWEHKY---------------PDELSGGMQQRVGLARALAVDPDIL 182 Query: 179 LLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 L+DE + LD M+ L E ++ +THD Sbjct: 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 63.4 bits (154), Expect = 2e-10 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 32/222 (14%) Query: 318 IEAKGISKSYNDRL-------LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 + +SK++ ++ N+S + G V + GP+G+GK+TL R L + PD Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64 Query: 371 SGTI---HVGETVCLSYVDQSRDSLEAEKTVWEDIS---------GGDDIV-------KL 411 G I H GE V L + R+ LE +T +S D+V + Sbjct: 65 EGQILVRHEGEWVDLVTA-EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123 Query: 412 NGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469 ++A + N + SGG++ RV++A+ ++LLDEPT L Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 Query: 470 DTETLSALEDALE--NFAGCAVI-ISHDRMFLDRLATHILAF 508 D + + + + G A++ I HD + +A +L Sbjct: 184 DATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225 Score = 57.2 bits (138), Expect = 1e-08 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 38/240 (15%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 +++ F H G ++ VL +++LS + + GP+G+GKST+LR + Sbjct: 10 VSKTFTLHQQGGVRL----PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65 Query: 61 GEAWLA-TGFTVGYLPQEPQLDLSKTVKENIIEGVAH------KQAILDRYNELMMNYSE 113 G+ + G V + EP+ L V+ I V+ + + LD E ++ Sbjct: 66 GQILVRHEGEWVDLVTAEPREVLE--VRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123 Query: 114 KTEEEIAKLQDIID----SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169 E AK D++ + LW L PA + SGGE++RV + + Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLA------------PA------TFSGGEQQRVNIAR 165 Query: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEV 226 + +LLLDEPT LDA A + + +RE A++ + HD + V + +L+V Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 62.6 bits (152), Expect = 3e-10 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 50/247 (20%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM----------AGIDKEYNGEAWLA 66 + +L+ I+ + + I+G +GAGKSTILR++ ID + + Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333 Query: 67 TGF-TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK-TEEEIAKLQD 124 + +G +PQ+ L T+ NI +Y E E A++ D Sbjct: 334 SLRRAIGIVPQDTVLFND-TIAYNI------------KYGRPDATAEEVGAAAEAAQIHD 380 Query: 125 IIDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 I S +G + V L LSGGEK+RVA+ + +L +P +L+LDE Sbjct: 381 FIQSLPEGY-----DTGVGERGL----------KLSGGEKQRVAIARTILKNPPILILDE 425 Query: 183 PTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNW--ILEVDRGKGIPYQGNY 238 T+ LD T ++ LRE S L++ H L + + I+ +D G+ I +G + Sbjct: 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHR---LSTIIDADEIIVLDNGR-IVERGTH 481 Query: 239 SAYLQMK 245 L Sbjct: 482 EELLAAG 488 Score = 59.1 bits (143), Expect = 3e-09 Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 28/226 (12%) Query: 302 NAQIIIPVGKRLGHVVIEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360 +A + PV RLG V +S +Y+ R +++ +SF +P G V ++G +GAGK+T+ Sbjct: 251 DAPPLWPV--RLGAVAFIN--VSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL 306 Query: 361 RMLTGDESPDSGTIHVGETVCLSYVDQS---------RDSLEAEKTVWEDIS-GGDDIVK 410 R+L +SG+I + QS +D++ T+ +I G D Sbjct: 307 RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA 366 Query: 411 LNGHEINSRAYCSAFNFKGGD-QQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEP 465 A F + +G LSGG++ RV +A+ + +++LDE Sbjct: 367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 Query: 466 TNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFE 509 T+ LDT T A++ AL + ++I+H RL+T I A E Sbjct: 427 TSALDTHTEQAIQAALREVSAGRTTLVIAH------RLSTIIDADE 466 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 61.4 bits (149), Expect = 6e-10 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 64/231 (27%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGIDKEYNGEAWLA 66 VL +++ KIGI+G GAGKST++ + GID L Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 + T+ +PQ+P L S T++ N LD ++E ++EEI Sbjct: 82 SSLTI--IPQDPTL-FSGTIRSN-----------LDPFDEY-------SDEEI------- 113 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 +L GLN LS G+++ + L + LL P +L+LDE T Sbjct: 114 ---------------YGALRVSEGGLN---LSQGQRQLLCLARALLKRPRVLVLDEATAS 155 Query: 187 LDAETIAWMEKYLRE-YSGAVLMVTHDRYFLDNVTNW--ILEVDRGKGIPY 234 +D T A ++K +RE ++ + ++ R L + ++ IL +D G+ Y Sbjct: 156 IDYATDALIQKTIREEFTNSTILTIAHR--LRTIIDYDKILVMDAGEVKEY 204 Score = 57.2 bits (138), Expect = 1e-08 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 17/187 (9%) Query: 318 IEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE + +S Y L ++ N+SFK+ G +G++G GAGK+TL L + G I Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 Query: 376 V-GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLN----GHEINSRAYCSAFNFKGG 430 + G + ++ R SL + +D + ++ N + Y + +GG Sbjct: 67 IDGIDISTIPLEDLRSSL---TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGG 123 Query: 431 DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCAV 489 +LS GQR + LA+ L V++LDE T +D T + ++ + E F + Sbjct: 124 L------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTI 177 Query: 490 IISHDRM 496 + R+ Sbjct: 178 LTIAHRL 184 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 61.0 bits (148), Expect = 8e-10 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%) Query: 35 IGILGPNGAGKSTILRIMAG-----IDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKEN 89 +G++GPNG GKST L+I+AG + K + W + E Q +K ++ + Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDW--DEILDEFRGSELQNYFTKLLEGD 86 Query: 90 IIEGVAHKQAILDRY-NELMMNYSE--KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLH 146 + V K +D + E K ++E KL +++D L + Sbjct: 87 V--KVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR--------- 135 Query: 147 CPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWMEKYLREYS 203 NI LSGGE +RVA+ L D DEP+++LD + A + + L E Sbjct: 136 ------NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189 Query: 204 GAVLMVTHDRYFLDNVTNWI 223 VL+V HD LD ++++I Sbjct: 190 NYVLVVEHDLAVLDYLSDYI 209 Score = 49.9 bits (119), Expect = 2e-06 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 44/202 (21%) Query: 338 FKLP---PGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-------------------- 374 +LP G ++G++GPNG GK+T ++L G P+ G Sbjct: 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 Query: 375 --------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426 V V YVD +++ V E + D+ KL+ Sbjct: 78 YFTKLLEGDVKVIVKPQYVDLIPKAVKG--KVGELLKKKDERGKLD-------ELVDQLE 128 Query: 427 FKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE---TLSALEDALEN 483 + + I LSGG+ RV +A L + DEP++ LD + + L L Sbjct: 129 LR-HVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187 Query: 484 FAGCAVIISHDRMFLDRLATHI 505 +++ HD LD L+ +I Sbjct: 188 DDNYVLVVEHDLAVLDYLSDYI 209 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 58.9 bits (142), Expect = 4e-09 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 27/180 (15%) Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG----ETVCLSYVDQSRDS 391 LS ++ G I+ ++GPNGAGK+TL + G + SG+I E + + + R Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHRAY 76 Query: 392 LEAEKT------VWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR-IGSLSGGQR 444 L ++T VW ++ K +N A D+ R LSGG+ Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQP-DKTRTELLND--VAGALAL--DDKLGRSTNQLSGGEW 131 Query: 445 GRVHLAKI-------LKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVIIS-HD 494 RV LA + G ++LLDEP N LD SAL+ L G A+++S HD Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191 Score = 48.1 bits (114), Expect = 7e-06 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 54/198 (27%) Query: 35 IGILGPNGAGKSTILRIMAGI-----DKEYNG---EAWLATGFTV--GYLPQEPQLDLSK 84 + ++GPNGAGKST+L MAG+ ++ G EAW AT YL Q+ + Sbjct: 28 LHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM 87 Query: 85 TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIES 144 V Y L +TE L D+ + L D Sbjct: 88 PVWH---------------YLTLHQPDKTRTEL----LNDVAGALALDD----------- 117 Query: 145 LHCPADGLNITSLSGGEKRRVALCKLLLS-SPD------LLLLDEPTNHLDAETIAWMEK 197 G + LSGGE +RV L ++L +PD LLLLDEP N LD + +++ Sbjct: 118 ----KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 Query: 198 YLREYSG---AVLMVTHD 212 L A++M +HD Sbjct: 174 LLSALCQQGLAIVMSSHD 191 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 58.5 bits (141), Expect = 4e-09 Identities = 49/193 (25%), Positives = 70/193 (36%), Gaps = 56/193 (29%) Query: 323 ISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381 K Y LL++ K G ++G++GPNG GKTT ++L G P Sbjct: 6 CVKRYGVFFLLVELGVVK--EGEVIGIVGPNGTGKTTAVKILAGQLIP------------ 51 Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSG 441 + W+ I+ Y + Q I LSG Sbjct: 52 -----------NGDNDEWDGIT---------------PVY----------KPQYI-DLSG 74 Query: 442 GQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDRMF 497 G+ RV +A L L DEP+ LD E A+ + A+++ HD Sbjct: 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 Query: 498 LDRLATHILAFEG 510 LD L+ I FEG Sbjct: 135 LDYLSDRIHVFEG 147 Score = 46.9 bits (111), Expect = 1e-05 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS----GAVLMVTH 211 LSGGE +RVA+ LL + L DEP+ +LD E + +R S L+V H Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 Query: 212 DRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKR 248 D LD +++ I + G P G Y Q K R Sbjct: 131 DLAVLDYLSDRIHVFE---GEP--GVYGIASQPKGTR 162 Score = 41.9 bits (98), Expect = 4e-04 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83 IGI+GPNG GK+T ++I+AG NG+ G T Y PQ +DLS Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ--YIDLS 73 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 58.3 bits (141), Expect = 5e-09 Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 34/190 (17%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG-IDKEYNGEAWLATGFTV---- 71 G++++L++++ +F P ++G +GAGK+T+L ++AG Y L +GF Sbjct: 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQET 861 Query: 72 -----GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 GY+ Q+ TV+E++ A + EE+ ++++I Sbjct: 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLP-----------KEVSDEEKYEYVEEVI 910 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL-LDEPTN 185 + L + + GL + LS +++R+ + L+++P +L LDEPT+ Sbjct: 911 ELLELKEYADALV-----------GLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 Query: 186 HLDAETIAWM 195 LD++ A + Sbjct: 960 GLDSQA-AAI 968 Score = 53.7 bits (129), Expect = 1e-07 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 43/224 (19%) Query: 300 PGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359 + R+ + K ++ ++S + PG + V+GP G+GKTTL Sbjct: 106 VNILSNPLESILRMLGKRKKKK--------IQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 Query: 360 FRMLTG---DESPDSGTIH--------VGETVCLSYVDQSRDSLEAEKTVWEDI------ 402 + L G + SG I ++Y + D E TV E + Sbjct: 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQ-DVHFPELTVRETLDFAARC 216 Query: 403 ----SGGDDIVKLNGHEINSRAYCSAF------NFKGGDQQQRIGSLSGGQRGRVHLAKI 452 S D++ + + + G+ R +SGG+R RV + ++ Sbjct: 217 KGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVR--GVSGGERKRVSIGEM 274 Query: 453 LKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVIIS 492 L +++ DE T LD+ T + AL L + G ++S Sbjct: 275 LVGPASILFWDEITRGLDSSTAFQIIKALRQ-LAHITGATALVS 317 Score = 53.3 bits (128), Expect = 2e-07 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 37/200 (18%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE---------YNGEAW--LATG 68 ++L DI+ P +LGP G+GK+T+L+ +AG YNG Sbjct: 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPK 188 Query: 69 FTVGYLPQE----PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 TV Y ++ P+L TV+E ++ A + RY+E+ + E+ A Sbjct: 189 KTVAYNSEQDVHFPEL----TVRE-TLDFAARCKGPGSRYDEV-----SRREKLAAMTDY 238 Query: 125 IIDSKGL-WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 ++ GL +T V + + +SGGE++RV++ ++L+ +L DE Sbjct: 239 LLKILGLDHCADTLVGNDM-----------VRGVSGGERKRVSIGEMLVGPASILFWDEI 287 Query: 184 TNHLDAETIAWMEKYLREYS 203 T LD+ T + K LR+ + Sbjct: 288 TRGLDSSTAFQIIKALRQLA 307 Score = 42.9 bits (101), Expect = 2e-04 Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 44/196 (22%) Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPD---SGTIHVGET- 379 R L++N+S PG + ++G +GAGKTTL +L G D SG ET Sbjct: 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETF 862 Query: 380 --VCLSYVDQSRDSLEAEKTVWE------------DISGG------DDIVKLNGHEINSR 419 V YV+Q E TV E ++S +++++L + + Sbjct: 863 ARVS-GYVEQQDIHS-PELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD 920 Query: 420 AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLA-KILKSGGNVILLDEPTNDLDTETLSALE 478 A G LS QR R+ + +++ + +++ LDEPT+ LD++ + + Sbjct: 921 ALV-GLPGSG---------LSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVM 970 Query: 479 DALENFA--GCAVIIS 492 L A G ++ + Sbjct: 971 RFLRKLADTGQTILCT 986 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 55.8 bits (134), Expect = 3e-08 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 32/198 (16%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 VL +INL + I G G+GK+++L ++ G + G+ + + + Q + Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK--IKHSGRISFSSQFSWI 109 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 + T+KENII GV++ D Y + + + EE+I K E + V Sbjct: 110 -MPGTIKENIIFGVSY-----DEYRYKSVVKACQLEEDITKFP-----------EKDNTV 152 Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200 E G+ LSGG++ R++L + + DL LLD P +LD T EK + Sbjct: 153 LGEG------GIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT----EKEIF 199 Query: 201 EYSGAVLMVTHDRYFLDN 218 E LM R + + Sbjct: 200 ESCVCKLMANKTRILVTS 217 Score = 52.3 bits (125), Expect = 3e-07 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 31/221 (14%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-HVGETVCLSYVDQSRD 390 ++ N++ K+ G ++ + G G+GKT+L ++ G+ P G I H G +S+ Q Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR---ISFSSQF-- 106 Query: 391 SLEAEKTVWEDISGG--------DDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGG 442 S T+ E+I G +VK E + + N G+ +LSGG Sbjct: 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI---TLSGG 163 Query: 443 QRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLA 502 QR R+ LA+ + ++ LLD P LD T E + C ++ + R+ + Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVFT----EKEIFESCVCKLMANKTRILVTSKM 219 Query: 503 TH-------ILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVL 536 H ++ EG+ +F G F E + + SS+++ Sbjct: 220 EHLKKADKILILHEGSS---YFYGTFSELQSLRPDFSSKLM 257 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 54.7 bits (132), Expect = 7e-08 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 40/195 (20%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES--PDSGTIH 375 +E K + S + ++ ++ + G + ++GPNG+GK+TL + + G G I Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI- 59 Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF-------K 428 + G+DI L E AF + K Sbjct: 60 --------------------------LFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 Query: 429 GGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG- 486 D + + SGG++ R + ++L ++ +LDEP + LD + L + + + Sbjct: 94 NADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153 Query: 487 --CAVIISHDRMFLD 499 +II+H + LD Sbjct: 154 GKSVLIITHYQRLLD 168 Score = 53.2 bits (128), Expect = 2e-07 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHDR 213 SGGEK+R + +LLL PDL +LDEP + LD + + + + LRE +VL++TH + Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 Query: 214 YFLDNV 219 LD + Sbjct: 165 RLLDYI 170 Score = 45.1 bits (107), Expect = 4e-05 Identities = 14/38 (36%), Positives = 24/38 (63%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54 G K++L +NL+ ++GPNG+GKST+ + + G Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 54.6 bits (131), Expect = 7e-08 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 49/214 (22%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-----DKEYNGEAWLATGF-- 69 G VL++I+ S P ++G+LG G+GKST+L + D + +G +W + Sbjct: 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQK 74 Query: 70 ---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 G +PQ+ + S T ++N LD Y + ++EEI K+ + Sbjct: 75 WRKAFGVIPQKVFI-FSGTFRKN-----------LDPYGKW-------SDEEIWKVAE-- 113 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNIT------SLSGGEKRRVALCKLLLSSPDLLLL 180 E ++ IE L+ LS G K+ + L + +LS +LLL Sbjct: 114 --------EVGLKSVIEQF---PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 Query: 181 DEPTNHLDAETIAWMEKYLRE-YSGAVLMVTHDR 213 DEP+ HLD T + K L++ ++ ++++ R Sbjct: 163 DEPSAHLDPITYQVIRKTLKQAFADCTVILSEHR 196 Score = 51.5 bits (123), Expect = 6e-07 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 60/217 (27%) Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RMLT--GDESP 369 + K ++ Y + +++N+SF + PG VG++G G+GK+TL R+L GD Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQI 62 Query: 370 D--------------------------SGTIHVGETVCLSYVDQSRDSLEAE---KTVWE 400 D SGT + D+ + E K+V E Sbjct: 63 DGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE 122 Query: 401 DISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460 G D V ++G + LS G + + LA+ + S ++ Sbjct: 123 QFPGQLDFVLVDGGCV----------------------LSHGHKQLMCLARSVLSKAKIL 160 Query: 461 LLDEPTNDLDTETLSALEDALEN-FAGCAVIISHDRM 496 LLDEP+ LD T + L+ FA C VI+S R+ Sbjct: 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI 197 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 53.0 bits (127), Expect = 2e-07 Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 51/197 (25%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ----EPQLDLSKTVKENI 90 I +LG NG GK+T +R++AG K E V Y PQ + + + + + I Sbjct: 370 IVMLGENGTGKTTFIRMLAGRLKP--DEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKI 427 Query: 91 IEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPAD 150 + H Q + D L + ++IID EVQ Sbjct: 428 RDAYMHPQFVNDVMKPLQI-------------ENIIDQ--------EVQ----------- 455 Query: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY----SGAV 206 LSGGE +RVAL L D+ L+DEP+ +LD+E K ++ + Sbjct: 456 -----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA 510 Query: 207 LMVTHD----RYFLDNV 219 +V HD Y D V Sbjct: 511 FVVEHDFIMATYLADRV 527 Score = 51.1 bits (122), Expect = 8e-07 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 28/203 (13%) Query: 31 PDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--VGYLP-QEPQLDLSKTVK 87 P +G++G NG GKST L+I+AG K G + + Y E Q +K ++ Sbjct: 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158 Query: 88 ENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHC 147 +N+ K I +Y + + + T + +D D+K + ++ ++ Sbjct: 159 DNL------KAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDR--- 209 Query: 148 PADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD-------AETIAWMEKYLR 200 + LSGGE +R A+ + + D+ + DEP+++LD A TI + L Sbjct: 210 -----EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI----RSLI 260 Query: 201 EYSGAVLMVTHDRYFLDNVTNWI 223 +++V HD LD ++++I Sbjct: 261 NPDRYIIVVEHDLSVLDYLSDFI 283 Score = 50.7 bits (121), Expect = 1e-06 Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 32/181 (17%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ--------SRDSLEAEK 396 I+ ++G NG GKTT RML G PD G V SY Q + L K Sbjct: 369 IIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNV--SYKPQKISPKREGTVRQLLHTK 426 Query: 397 T--VWEDISGGDDIVK-LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKIL 453 + +D++K L I Q + LSGG+ RV LA L Sbjct: 427 IRDAYMHPQFVNDVMKPLQIENI---------------IDQEVQGLSGGELQRVALALCL 471 Query: 454 KSGGNVILLDEPTNDLDTETLSALEDALENF----AGCAVIISHDRMFLDRLATHILAFE 509 +V L+DEP+ LD+E ++ F A ++ HD + LA ++ FE Sbjct: 472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 Query: 510 G 510 G Sbjct: 532 G 532 Score = 39.5 bits (92), Expect = 0.002 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 29/202 (14%) Query: 337 SFKL------PPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV--GETVCLSYVDQS 388 SFKL PG ++G++G NG GK+T ++L G + P+ G L+Y S Sbjct: 88 SFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGS 147 Query: 389 ----------RDSLEAE-KTVWED-----ISGG-DDIVKLNGHEINSRAYCSAFNFKGGD 431 D+L+A K + D + G ++ N C + Sbjct: 148 ELQNYFTKILEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDL-NNL 206 Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT-ETLSALED--ALENFAGCA 488 + + LSGG+ R +A + +V + DEP++ LD + L A +L N Sbjct: 207 LDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYI 266 Query: 489 VIISHDRMFLDRLATHILAFEG 510 +++ HD LD L+ I G Sbjct: 267 IVVEHDLSVLDYLSDFICCLYG 288 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 51.9 bits (124), Expect = 4e-07 Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 40/215 (18%) Query: 318 IEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE G+ Y D + D + LP G ++G NGAGKTTL ++L+G G + Sbjct: 14 IEVSGLQFKYKVSDPIFFD-FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQ 72 Query: 376 VG--------ETVC---LSYV--DQSRDSLEA-EKTVWEDISGGDDIVKLNGHEINSRAY 421 V LSY+ + S+ A E + DIS I + G + R Sbjct: 73 VLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREK 132 Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 + D + R+ +S GQR RV + L V+LLDE T DLD + A D L Sbjct: 133 L--IDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLD---VLARADLL 187 Query: 482 ENFA------GCAVIISHDRMFLDRLATHILAFEG 510 E G ++ ATHI F+G Sbjct: 188 EFLKEECEQRGATIV----------YATHI--FDG 210 Score = 50.0 bits (119), Expect = 2e-06 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 44/215 (20%) Query: 1 MARKFIYHMAGLSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY 59 F ++GL + S + D NL ++ ++G NGAGK+T+L+I++G Sbjct: 8 AVSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSG----- 62 Query: 60 NGEAWLATGFTVGYLPQEPQLDLSKTVKENI--IEGVAHKQAILDRYNELMMNYSEKTEE 117 + G V L + D S ++ + G K + L + S E Sbjct: 63 ---KHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDIS--AEH 117 Query: 118 EIA-----------KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVA 166 I KL DI+D W + +S G++RRV Sbjct: 118 MIFGVGGDDPERREKLIDILDIDLRWRMH--------------------KVSDGQRRRVQ 157 Query: 167 LCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE 201 +C LL +LLLDE T LD A + ++L+E Sbjct: 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKE 192 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 52.1 bits (125), Expect = 4e-07 Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 49/184 (26%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 G +++L++I+ P ++G +GAGK+T+L ++AG Sbjct: 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG---------------------- 55 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136 KT +I G E+++N + Q D+ + Sbjct: 56 ------RKTA--GVITG------------EILINGRPLDKN----FQRSTGYVEQQDVHS 91 Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196 E+L A + LS +++R+ + L + P +L LDEPT+ LD++ + Sbjct: 92 PNLTVREALRFSA---LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148 Query: 197 KYLR 200 ++L+ Sbjct: 149 RFLK 152 Score = 51.0 bits (122), Expect = 9e-07 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 44/177 (24%) Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC------- 381 R L++N+S + PG + ++G +GAGKTTL +L G + +G I + Sbjct: 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK--TAGVITGEILINGRPLDKN 76 Query: 382 ----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437 YV+Q D TV E + SA +G Sbjct: 77 FQRSTGYVEQQ-DVHSPNLTVREALR------------------FSA-LLRG-------- 108 Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVIIS 492 LS QR R+ + L + +++ LDEPT+ LD++ + L+ A G A++ + Sbjct: 109 -LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 51.5 bits (123), Expect = 6e-07 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 38/192 (19%) Query: 317 VIEAKGISKSYNDRL---------LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367 ++E + +SK++ R + +SF L G + +IG NG+GK+TL +ML G Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 Query: 368 SPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGG-----------DDIVKLNGHEI 416 P SG I + + L + D S S + + +++D + D ++LN Sbjct: 64 EPTSGEILINDHP-LHFGDYSFRS-KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE 121 Query: 417 NSRAYCSAFNFKGGDQQQRIG-----------SLSGGQRGRVHLAKILKSGGNVILLDEP 465 + + + +G L+ GQ+ RV LA+ L +I+ DE Sbjct: 122 P-----EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEA 176 Query: 466 TNDLDTETLSAL 477 LD S L Sbjct: 177 LASLDMSMRSQL 188 Score = 47.6 bits (113), Expect = 8e-06 Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 24/240 (10%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAK--IGILGPNGAGKSTILRIMAGIDKE 58 +++ F Y +F + V +SF + I+G NG+GKST+ +++AG+ + Sbjct: 10 LSKTFRYRTG----LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65 Query: 59 YNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 +GE L + + + + + ++ + + I + + ++ E Sbjct: 66 TSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE- 123 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 + + I ET V + H L+ G+K+RVAL + L+ P ++ Sbjct: 124 -QRRKQIF--------ETLRMVGLLPDHA---NYYPHMLAPGQKQRVALARALILRPKII 171 Query: 179 LLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 + DE LD + I M + + + + VT + ++++ +L + G+ + Sbjct: 172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 50.8 bits (121), Expect = 1e-06 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Query: 425 FNFKGGDQQQRIGSLSGGQRG------RVHLAKILKSGGNV--ILLDEPTNDLDTETLSA 476 G + + I +LSGG+R R+ L+ +L+ + + LDEP LD E L Sbjct: 802 VVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEK 861 Query: 477 LEDALENFA---GCAVIISHDRMFLDR 500 L + LE +IISH +R Sbjct: 862 LAEILEELLSDGRQIIIISHVEELKER 888 Score = 48.5 bits (115), Expect = 4e-06 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%) Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS 156 I NE++ S + I G L V E I + Sbjct: 766 LAQIEAEANEILSKLSLNRYDLRRL---TIRKDGNGGLVVVVYDGGEVRP-------IKT 815 Query: 157 LSGGEKR------RVALCKLLLSSP--DLLLLDEPTNHLDAETIAWMEKYLREY---SGA 205 LSGGE+ R+AL LL +LL LDEP LD E + + + L E Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875 Query: 206 VLMVTHDRYFLD 217 +++++H + Sbjct: 876 IIIISHVEELKE 887 Score = 30.0 bits (67), Expect = 1.9 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 342 PGGIVGVIGPNGAGKTTLF 360 GI ++GPNGAGK+++ Sbjct: 24 DSGIFLIVGPNGAGKSSIL 42 Score = 28.9 bits (64), Expect = 4.1 Identities = 11/13 (84%), Positives = 13/13 (100%) Query: 37 ILGPNGAGKSTIL 49 I+GPNGAGKS+IL Sbjct: 30 IVGPNGAGKSSIL 42 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 50.3 bits (120), Expect = 1e-06 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 17/210 (8%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLE 393 NL+ K G +V +IG NG+GK+TL +LTG P SG I + G+ V ++ R Sbjct: 343 NLTIK--RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 Query: 394 AEKTVWEDISGGDDIVKLNGH--EINSRAYCSAFNFKG----GDQQQRIGSLSGGQRGRV 447 A V+ D D ++ G + D + LS GQ+ R+ Sbjct: 401 A---VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 Query: 448 HLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAVIISHDRMFLDRLAT 503 L L ++++LDE D D E L L+ ISHD + A Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HAD 516 Query: 504 HILAFEGNGHVEWFEGNFEEYEKDKLSRSS 533 +L E +E +D ++R++ Sbjct: 517 RLLEMRNGQLSELTGEERDETARDAVARTA 546 Score = 41.1 bits (96), Expect = 7e-04 Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 31/208 (14%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81 + INL+ + ++G NG+GKST+ ++ G+ + +GE L +P Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI---------LLDGKPVSA 389 Query: 82 LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVA 141 + V + D+ E A Q I K L LE + + Sbjct: 390 EQLEDYRKLFSAVFSDYHLFDQLLGP---------EGKASPQLI--EKWLQRLELAHKTS 438 Query: 142 IESLHCPADG-LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK--- 197 + DG + LS G+K+R+AL LL D+L+LDE D + Sbjct: 439 LN------DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492 Query: 198 -YLREYSGAVLMVTHDRYFLDNVTNWIL 224 L+E + ++HD ++ + + Sbjct: 493 PLLKEQGKTIFAISHDDHYFIHADRLLE 520 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 50.1 bits (119), Expect = 1e-06 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 53/231 (22%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAG---------------IDKEYNGEAWLA 66 L +IN+ I+G G GKS++L + G + Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 ++V Y Q+P L L+ TV+ENI G + RY K + LQ I Sbjct: 77 NRYSVAYAAQKPWL-LNATVEENITFGSPFNK---QRY---------KAVTDACSLQPDI 123 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP--- 183 D D +TE+ G+N LSGG+++R+ + + L + +++ LD+P Sbjct: 124 DLLPFGD-QTEIG---------ERGIN---LSGGQRQRICVARALYQNTNIVFLDDPFSA 170 Query: 184 -----TNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRG 229 ++HL E I K+L++ +++VTH +L + +WI+ + G Sbjct: 171 LDIHLSDHLMQEGIL---KFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217 Score = 46.6 bits (110), Expect = 2e-05 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 36/207 (17%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392 + N++ ++P G + ++G G GK++L + G+ G +H ++ S Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 Query: 393 E-------AEK------TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG-------GDQ 432 A+K TV E+I+ G K +A A + + GDQ Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQR-----YKAVTDACSLQPDIDLLPFGDQ 131 Query: 433 QQ---RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAV 489 + R +LSGGQR R+ +A+ L N++ LD+P + LD L D L G Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH----LSDHLMQ-EGILK 186 Query: 490 IISHDRMFLDRLATHILAFEGNGHVEW 516 + D+ L L TH L + H +W Sbjct: 187 FLQDDKRTL-VLVTHKLQYL--PHADW 210 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 47.7 bits (113), Expect = 7e-06 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 24/219 (10%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 G K +D ++++ G++G +G+GKS I + + G++K + W T + + Sbjct: 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK----DNWRVTADRMRF--- 70 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW--DL 134 +DL + + V H +++ + + ++ SE+ ++ + KG W Sbjct: 71 -DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRF 129 Query: 135 ETEVQVAIESLHCPA--DGLNITS-----LSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 + AIE LH D +I L+ GE ++V + L + P LL+ DEPTN + Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189 Query: 188 DAETIAWMEKYL----REYSGAVLMVTHDRYFLDNVTNW 222 + T A + + L + + +L+++HD L ++ W Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHD---LQMISQW 225 Score = 28.4 bits (63), Expect = 5.7 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVIISHD 494 L+ G+ +V +A L + +++ DEPTN ++ T + + L +N ++ISHD Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218 Query: 495 RMFLDRLATHI 505 + + A I Sbjct: 219 LQMISQWADKI 229 Score = 27.7 bits (61), Expect = 8.2 Identities = 11/33 (33%), Positives = 21/33 (63%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 +D +S L G I G++G +G+GK+ + + + G Sbjct: 23 VDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG 55 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 47.2 bits (112), Expect = 1e-05 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 44/178 (24%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392 + NL +P +V V G +G+GK+TL + + Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL-------------VNEGLYASGKARLISFLPKF 57 Query: 393 EAEKTVWED-----ISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRV 447 K ++ D I G + L Q++ +LSGG+ RV Sbjct: 58 SRNKLIFIDQLQFLIDVGLGYLTLG---------------------QKLSTLSGGELQRV 96 Query: 448 HLAKILKSG--GNVILLDEPTNDLDTETLSALEDALENFAGCA---VIISHDRMFLDR 500 LA L S G + +LDEP+ L + ++ L + ++ ++I H+ L Sbjct: 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 Score = 46.4 bits (110), Expect = 2e-05 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Query: 151 GLNITSLSGGEKRRVALCKLLLSSPD--LLLLDEPTNHLDAETIAWME---KYLREYSGA 205 G +++LSGGE +RV L L S P L +LDEP+ L + I + K L + Sbjct: 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141 Query: 206 VLMVTHDRYFLDNVTNWILEVDRGKGI 232 V+++ H+ L + +WI++ G G Sbjct: 142 VILIEHNLDVLSS-ADWIIDFGPGSGK 167 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 44.1 bits (104), Expect = 9e-05 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 41/194 (21%) Query: 339 KLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLE-AEK 396 L G+ + GP GAGK+T+ D+ T + G+T + R E Sbjct: 24 GLDNNGLFLICGPTGAGKSTIL---------DAITYALYGKTPRYGRQENLRSVFAPGED 74 Query: 397 TVWEDISGGDDIVKLNGHE--------INSRAYCSAFNFKGGDQQQ----RIGSLSGGQR 444 T + +L G + ++ + G+ + + +LSGG+ Sbjct: 75 TAEVSFT-----FQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGET 129 Query: 445 GRVHLA------KILKSGGNVIL----LDEPTNDLDTETLSALEDALENFAG---CAVII 491 L+ ++L++ G L +DE LD E L A+ ALE +I Sbjct: 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189 Query: 492 SHDRMFLDRLATHI 505 SH +R+ + Sbjct: 190 SHVEELKERIPQRL 203 Score = 29.8 bits (67), Expect = 2.2 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 14 KVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMA 53 K FG + I+ + + + I GP GAGKSTIL + Sbjct: 9 KNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAIT 49 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 43.0 bits (101), Expect = 2e-04 Identities = 35/199 (17%), Positives = 52/199 (26%), Gaps = 60/199 (30%) Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR---MLTGDESPD---SGTIHVGETVCLS 383 G + + GPNG+GK+T+ + G + G V Sbjct: 8 PSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAV 67 Query: 384 YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQ 443 + F LSGG+ Sbjct: 68 SAE--------------------------------------LIF-------TRLQLSGGE 82 Query: 444 RGRVHLAKIL----KSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-ISHDRM 496 + LA IL + +LDE LD AL +A+ G VI I+H Sbjct: 83 KELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 Query: 497 FLDRLAT--HILAFEGNGH 513 + HI + Sbjct: 143 LAELADKLIHIKKVITGVY 161 Score = 36.1 bits (83), Expect = 0.027 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 154 ITSLSGGEKRRVALCKLL----LSSPDLLLLDEPTNHLD---AETIAWMEKYLREYSGAV 206 LSGGEK AL +L L L +LDE LD + +A V Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134 Query: 207 LMVTHD 212 +++TH Sbjct: 135 IVITHL 140 Score = 29.9 bits (67), Expect = 1.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILR 50 +++F + I GPNG+GKSTIL Sbjct: 11 FVPNDVTFGEGSLTIITGPNGSGKSTILD 39 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 42.5 bits (100), Expect = 3e-04 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%) Query: 436 IGSLSGGQRGRVHLAKILKSG--GNVILLDEPTNDL---DTETLSALEDALENFAGCAVI 490 G+LSGG+ R+ LA + SG G + +LDEP+ L D E L L + ++ Sbjct: 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIV 538 Query: 491 ISHDRMFLDRLATHIL-----AFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSG 538 + HD + R A HI+ A E G + EG EE + S + + LSG Sbjct: 539 VEHDEDTI-RAADHIIDIGPGAGEHGGEIV-AEGTPEELLANPESLTGQYLSG 589 Score = 38.2 bits (89), Expect = 0.006 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Query: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENF--AGCA 488 Q +LSGG+ RV LAK L +G + +LDEPT L + + L + L G Sbjct: 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNT 877 Query: 489 VIISHDRMFLDRLATHIL 506 VI+ + + + A I+ Sbjct: 878 VIVIEHNLDVIKTADWII 895 Score = 37.8 bits (88), Expect = 0.008 Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 61/217 (28%) Query: 153 NITSLSGGEKRRVALCKLLLSSPD--LLLLDEPTNHL---DAETIAWMEKYLREYSGAVL 207 + +LSGGE +R+ L + S L +LDEP+ L D E + K LR+ V+ Sbjct: 478 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537 Query: 208 MVTHDRYFLDNVTNWILEVDRGKG-----IPYQGNYSAYLQMKAKRMAQENREEISRQKA 262 +V HD + + I+++ G G I +G L Q +S +K Sbjct: 538 VVEHDEDTI-RAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQ----YLSGKKT 592 Query: 263 IERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKG 322 IE PK R++ + + EL + + Sbjct: 593 IEV--------PKKRRAPNGKWL----ELKGARRNN------------------------ 616 Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359 + N+ ++P G V G +G+GK+TL Sbjct: 617 ----------LKNIDVEIPLGVFTCVTGVSGSGKSTL 643 Score = 37.1 bits (86), Expect = 0.012 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 24/130 (18%) Query: 107 LMMNYSEKTE--EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164 L M E E E I K+ L+T V V + + G T+LSGGE +R Sbjct: 782 LDMTVEEALEFFEAIPKIARK--------LQTLVDVGLGYIKL---GQPATTLSGGEAQR 830 Query: 165 VALCKLLLSS---PDLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTHDRYFLDN 218 V L K L L +LDEPT L + I + + L + V+++ H+ LD Sbjct: 831 VKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN---LDV 887 Query: 219 VTN--WILEV 226 + WI+++ Sbjct: 888 IKTADWIIDL 897 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 39.2 bits (92), Expect = 0.003 Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54 ++L +NLS I+GPNG+GKST+ +++AG Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 Score = 36.5 bits (85), Expect = 0.017 Identities = 16/49 (32%), Positives = 31/49 (63%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 ++E K + S N+ ++ L+ + G I ++GPNG+GK+TL +++ G Sbjct: 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 Score = 34.6 bits (80), Expect = 0.069 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWMEKYLREYSGAVLMVTHDRY 214 SGGEK+R + ++ L +L +LDE + LD + IA L +++++TH + Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 Query: 215 FLD 217 LD Sbjct: 213 LLD 215 >gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]. Length = 1294 Score = 39.1 bits (91), Expect = 0.003 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 25/129 (19%) Query: 396 KTVWEDISGGDDI--VKLNGHEINSRAYCSAFNF-----KGGDQQQRIGSLSGGQRG--- 445 + +W G DI +K+ ++S +N+ KG + G S GQ+ Sbjct: 1134 RELWRKTYRGTDIDYIKIRSDSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLAS 1193 Query: 446 ---RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----------ENFAGCAVIIS 492 R+ LA+ S V+ LDEPT +LD E + +L AL NF ++I+ Sbjct: 1194 LIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQ--LIVIT 1251 Query: 493 HDRMFLDRL 501 HD F+ L Sbjct: 1252 HDEDFVQLL 1260 Score = 31.4 bits (71), Expect = 0.70 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL--------REYSGAVLMVTHDRYF 215 R+AL + S+ +L LDEPT +LD E I + K L R+ + ++++THD F Sbjct: 1197 RLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDF 1256 Query: 216 LDNVT 220 + + Sbjct: 1257 VQLLG 1261 >gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 197 Score = 38.9 bits (91), Expect = 0.003 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 23/187 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL---FRMLTGDESPDSGTI 374 +E KG KS+ D+ I F P G+ ++GPNG+GK+ + R + G++S S Sbjct: 4 LELKGF-KSFADKTTIP---F---PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRG 56 Query: 375 HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQ 434 V + + + + AE T+ D S G + I S+ S G + Q Sbjct: 57 EKMSDVIFAGSETRKPANFAEVTLTFDNSDG-------RYSIISQGDVSEIIEAPGKKVQ 109 Query: 435 RIGSLSGGQRGRVHLA---KILKSGGNVI-LLDEPTNDLDTETLSALEDALENFAGCA-- 488 R+ LSGG++ LA I + + +LDE LD + L+ F+ Sbjct: 110 RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQF 169 Query: 489 VIISHDR 495 ++I+H + Sbjct: 170 IVITHRK 176 Score = 35.8 bits (83), Expect = 0.033 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%) Query: 153 NITSLSGGEKRRVALCKLLLS------SPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV 206 ++ LSGGEK AL LL + SP +LDE LD + + L+E+S Sbjct: 110 RLSLLSGGEKALTAL-ALLFAIFRVRPSP-FCVLDEVDAALDDANVERFARLLKEFSKET 167 Query: 207 --LMVTHDR 213 +++TH + Sbjct: 168 QFIVITHRK 176 Score = 31.6 bits (72), Expect = 0.56 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49 K F K + +P I+GPNG+GKS I+ Sbjct: 10 KSFADKTTIP------FPPGLTAIVGPNGSGKSNII 39 >gnl|CDD|39108 KOG3905, KOG3905, KOG3905, Dynein light intermediate chain [Cell motility]. Length = 473 Score = 37.7 bits (87), Expect = 0.008 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392 KLP G V V+G NG+GKT+L L G E+ G+ E + L D+ RD L Sbjct: 44 RTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGL--EYLYLHVHDEDRDDL 99 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 37.5 bits (87), Expect = 0.011 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 19/117 (16%) Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL---SSPDLLLLDEPTNHLDAE 190 L+T V + + G T+LSGGE +R+ L K L + L +LDEPT L Sbjct: 150 LQTLCDVGLGYIKL---GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH 206 Query: 191 TIAWMEKYLR---EYSGAVLMVTHDRYFLDNVTN--WILEV-----DRGKGIPYQGN 237 + + + L+ + V+++ H+ LD + WI+++ D G + G Sbjct: 207 DVKKLLEVLQRLVDKGNTVVVIEHN---LDVIKCADWIIDLGPEGGDGGGQVVASGT 260 Score = 35.9 bits (83), Expect = 0.028 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 434 QRIGSLSGGQRGRVHLAKIL--KSGGNVI-LLDEPTNDLDTETLSALEDALENF--AGCA 488 Q +LSGG+ R+ LAK L +S G + +LDEPT L + L + L+ G Sbjct: 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT 224 Query: 489 VIISHDRMFLDRLATHIL 506 V++ + + + A I+ Sbjct: 225 VVVIEHNLDVIKCADWII 242 Score = 28.2 bits (63), Expect = 5.5 Identities = 9/25 (36%), Positives = 16/25 (64%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTL 359 N+ +P G + V G +G+GK++L Sbjct: 13 NIDVDIPLGVLTCVTGVSGSGKSSL 37 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 37.1 bits (86), Expect = 0.011 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 33/201 (16%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTL--------------------FRMLTGD-ESPDSGT 373 N+ +P +V + G +G+GK++L R G + PD + Sbjct: 13 NVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS 72 Query: 374 IHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ- 432 I G + ++ +DQ S TV ++ D ++L + R G Sbjct: 73 IE-GLSPAIA-IDQKTTSRNPRSTV-GTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL 129 Query: 433 --QQRIGSLSGGQRGRVHLAKILKSG--GNVILLDEPTNDL---DTETLSALEDALENFA 485 + +LSGG+ R+ LA + SG G + +LDEP+ L D + L L + Sbjct: 130 TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG 189 Query: 486 GCAVIISHDRMFLDRLATHIL 506 +++ HD + R A H++ Sbjct: 190 NTVLVVEHDEDTI-RAADHVI 209 Score = 35.2 bits (81), Expect = 0.046 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Query: 153 NITSLSGGEKRRVALCKLLLSSPD--LLLLDEPTNHL---DAETIAWMEKYLREYSGAVL 207 + +LSGGE +R+ L + S L +LDEP+ L D + + K LR+ VL Sbjct: 134 SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193 Query: 208 MVTHDRYFLDNVTNWILEVDRGKGI 232 +V HD + + ++++ G G+ Sbjct: 194 VVEHDEDTIRA-ADHVIDIGPGAGV 217 >gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo. Length = 490 Score = 36.4 bits (84), Expect = 0.021 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG-ETVCLSYVDQSRDSL 392 KLP G V V+G +G+GKTTL L G E P G G E + L+ D+ RD Sbjct: 39 RSKLPSGKNVLVLGEDGSGKTTLIAKLQGVEHPKKGR---GLEYLYLNVHDEDRDDQ 92 >gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 243 Score = 36.4 bits (84), Expect = 0.023 Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 49/211 (23%) Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF---RMLTGDESPDS------GTIH 375 KSY D+ +I+ S V+G NG+GK+ F R + DE +H Sbjct: 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH 64 Query: 376 VG--ETVCLSYV----DQSRDSLEAEKT----------------VWEDISGGDDIVKL-- 411 G +V +YV D S + +K + + +D++ L Sbjct: 65 EGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE 124 Query: 412 -------NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILK----SGGNVI 460 N + I + ++ D+QQ + LSGGQ+ V LA I Sbjct: 125 SAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184 Query: 461 LLDEPTNDLDTETLSALEDALENFAGCAVII 491 L DE LD + +A+ + ++ + A I Sbjct: 185 LFDEIDAALDAQYRTAVANMIKELSDGAQFI 215 >gnl|CDD|32383 COG2201, CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]. Length = 350 Score = 35.3 bits (81), Expect = 0.048 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 10/122 (8%) Query: 163 RRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNW 222 R A+ K+ PD++ LD +D + + K +R V+MV+ T Sbjct: 36 GREAIDKVKKLKPDVITLDVEMPVMDG--LEALRKIMRLRPLPVIMVSSLTEEGAEATLE 93 Query: 223 ILE------VDRGKGIPYQG--NYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSP 274 LE + + G G + L K + A++NR+ + + V Sbjct: 94 ALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAARQNRKSLRTPEPPRAPAFRPVKPG 153 Query: 275 KA 276 A Sbjct: 154 PA 155 >gnl|CDD|34256 COG4637, COG4637, Predicted ATPase [General function prediction only]. Length = 373 Score = 35.0 bits (80), Expect = 0.055 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 157 LSGGEKRRVALCKLLLSS--PDLLLLDEPTNHLDAETIAWMEKYLREYS--GAVLMVTHD 212 LS G R +AL LLLS P LLLLDEP L + + + + +R + V++ TH Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHS 330 Query: 213 RYFLDNV 219 L+ V Sbjct: 331 PRLLNAV 337 Score = 28.0 bits (62), Expect = 7.2 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRML 363 S L + +IG NGAGK+ + L Sbjct: 16 SLDLEIRRVNVIIGANGAGKSNFYDAL 42 >gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]. Length = 1077 Score = 34.4 bits (78), Expect = 0.080 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 278 QSKSKARIRSYEELVESAAHRHPGNAQII-IPVGKRLGHVVIEAKGISKSYNDRLLIDNL 336 + K+K ++L + + NA+ + ++ + I + ++D Sbjct: 3 EKKAKHSKAEKKKLKKVMDGKVGNNAKAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRT 62 Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRML 363 LPP IV V+GP G GK+TL R L Sbjct: 63 PKDLPPPFIVAVVGPPGTGKSTLIRSL 89 >gnl|CDD|144080 pfam00350, Dynamin_N, Dynamin family. Length = 168 Score = 34.1 bits (79), Expect = 0.10 Identities = 34/171 (19%), Positives = 54/171 (31%), Gaps = 36/171 (21%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP--------QLDLSKTV 86 I ++G AGKS++L + G D LP+ P L L + Sbjct: 1 IAVVGDQSAGKSSVLNALLGRD----------------ILPRGPGPTTRRPLVLRLGEE- 43 Query: 87 KENIIEGVAHKQAILDRYNELMMNYS-EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145 G ++ + L + EEI D I G + + I S Sbjct: 44 -----PGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKISGTGKGISSEPIILEILSP 98 Query: 146 HCPADGLNITSLSG---GEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193 P GL + G L + + D++L NH + + A Sbjct: 99 LVP--GLTLVDTPGLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEA 147 Score = 28.7 bits (65), Expect = 4.5 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC---LSYVDQSRDSLEAEKTVWED 401 + V+G AGK+++ L G + G T L ++ A K ++D Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPT--TRRPLVLRLGEEPGAIPGAVKVEYKD 57 >gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]. Length = 363 Score = 33.3 bits (76), Expect = 0.16 Identities = 24/107 (22%), Positives = 31/107 (28%), Gaps = 20/107 (18%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTL------------FRMLTGDESPDSGTIHVGETV 380 L L PG + ++G NG GKT L R S D I G Sbjct: 14 YAELDLDLSPG-VNVLVGENGQGKTNLLEAIYLLALGRSHRT-----SRDKELIRTGADE 67 Query: 381 CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA-YCSAFN 426 R E + G V++NG + A N Sbjct: 68 AEISARVQRKGREGTLGLQIS-KKGRRRVRINGTKARKLAELAGHLN 113 >gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 225 Score = 33.4 bits (77), Expect = 0.17 Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 341 PPGGIVGVIGPNGAGKTTLFRML 363 PP +V V+GP G GKTTL + L Sbjct: 37 PPPLVVAVVGPPGVGKTTLIKSL 59 >gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]. Length = 219 Score = 33.4 bits (75), Expect = 0.18 Identities = 14/33 (42%), Positives = 18/33 (54%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378 + V+G G GKTTL L GDE P+ +G Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGN 40 Score = 31.1 bits (69), Expect = 0.89 Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 21/117 (17%) Query: 34 KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93 KI +LG G GK+T+L + F GY P LD +KT++ Sbjct: 7 KIVVLGDGGVGKTTLLN------------RLVGDEFPEGYPPTIGNLDPAKTIEPYRRNI 54 Query: 94 VAHKQAILD-----RYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145 K + D Y L Y I + D + +L E + L Sbjct: 55 ---KLQLWDTAGQEEYRSLRPEYYRGA-NGILIVYDSTLRESSDELTEEWLEELREL 107 >gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein [Function unknown]. Length = 491 Score = 33.2 bits (75), Expect = 0.19 Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 17/107 (15%) Query: 272 SSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGK------RLGHVV--IEAKGI 323 SS KA S+ R A P R+ I GI Sbjct: 117 SSVKAALVSSRPTSRDKGSCSGGAG---TAATSAGAPNALQELQPPRMKRSTPLIVDNGI 173 Query: 324 SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 +LL F ++GV+G G+GK+TL +L S D Sbjct: 174 FNDNARKLLHKTTDFT-----VIGVLGGQGSGKSTLLSLLAA-NSLD 214 Score = 32.8 bits (74), Expect = 0.26 Identities = 12/26 (46%), Positives = 19/26 (73%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYN 60 IG+LG G+GKST+L ++A +Y+ Sbjct: 191 IGVLGGQGSGKSTLLSLLAANSLDYD 216 >gnl|CDD|133249 cd00066, G-alpha, G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 317 Score = 32.9 bits (76), Expect = 0.21 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 18/113 (15%) Query: 34 KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93 K+ +LG +GKSTIL+ M + GF+ +E + + NI++ Sbjct: 2 KLLLLGAGESGKSTILKQMKILHG---------DGFS-----EEELREYRPVIYSNILQS 47 Query: 94 VAHKQAILDRYNELMMNYS-EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145 + +A+L+ L + + + E++ K+ +L E+ AI+ L Sbjct: 48 M---KALLEAMERLNIPFGDPENEKDAKKILSFAPELEEGELPPELAEAIKEL 97 >gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction only]. Length = 300 Score = 33.1 bits (75), Expect = 0.21 Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTV 86 +GI GP G+GKST+ ++ + E YL +L L++ V Sbjct: 53 VGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV 104 >gnl|CDD|32246 COG2063, FlgH, Flagellar basal body L-ring protein [Cell motility and secretion]. Length = 230 Score = 33.0 bits (75), Expect = 0.21 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 2/122 (1%) Query: 339 KLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTV 398 + PG I G LF D TI + E S + S + Sbjct: 45 PIQPGSIFQGYSLWNYGYQPLFEDRRASNVGDILTIVIQENTSASKSSSTNRSRKNSTGF 104 Query: 399 WEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458 GG + NG + +S S +FKG +R SL+G V ++L +G Sbjct: 105 GLTAVGGVLLGGNNGGDDSSYETSSNNDFKGKGGAKRSESLTGTITATVV--QVLPNGNL 162 Query: 459 VI 460 VI Sbjct: 163 VI 164 >gnl|CDD|39860 KOG4661, KOG4661, KOG4661, Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]. Length = 940 Score = 32.8 bits (74), Expect = 0.25 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 227 DRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIR 286 D+ KG P ++ K +R ++R+ SR+K ER D + R+++ + RIR Sbjct: 572 DKSKGDPVISVKTSQ-DSKERRSKSQDRKSRSREKRRERSFDKRKEERRRREAEERQRIR 630 Query: 287 SYEE 290 E Sbjct: 631 EERE 634 >gnl|CDD|144180 pfam00488, MutS_V, MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 234 Score = 32.2 bits (74), Expect = 0.43 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%) Query: 37 ILGPNGAGKSTILR------IMAGI 55 I GPN GKST LR IMA I Sbjct: 47 ITGPNMGGKSTYLRQVALIVIMAQI 71 >gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 203 Score = 31.9 bits (73), Expect = 0.44 Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 349 IGPNGAGKTTLFRMLTGDESPDSGT 373 +GP+ +GKT LF LT + + T Sbjct: 6 LGPSDSGKTALFTKLTTGKYRSTVT 30 >gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain. Length = 285 Score = 31.9 bits (73), Expect = 0.48 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDS 391 LI+ L G+VG++G G GKTTL + + D+S ++V V ++ Sbjct: 8 LIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHF----DSVAWVVVSKTYTE 63 Query: 392 LEAEKTVWEDI-SGGDDIVKLNGHEI 416 +K + +++ D V+ N E+ Sbjct: 64 FRLQKDILQELGLDDSDWVEKNESEL 89 >gnl|CDD|35689 KOG0468, KOG0468, KOG0468, U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]. Length = 971 Score = 31.9 bits (72), Expect = 0.49 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 290 ELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVI 349 E + P +I PV + I + + ++ D + L VG++ Sbjct: 77 ETLVQEEDTQPLREPLIEPVRRL--KFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLV 134 Query: 350 GPNGAGKTTLFRMLTGDESPD 370 G GKT L +L PD Sbjct: 135 GHLHHGKTALMDLLVEQTHPD 155 >gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop. Length = 122 Score = 31.6 bits (72), Expect = 0.54 Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 345 IVGVIGPNGAGKTTLFRML 363 IV V+GP +GKTTL R L Sbjct: 2 IVLVVGPKDSGKTTLIRKL 20 >gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]. Length = 953 Score = 31.5 bits (71), Expect = 0.66 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 12/87 (13%) Query: 320 AKGISKSYNDRLLIDNLSFKLPPGG-------IVGVIGPNGAGKTTLFRMLTGDESPDSG 372 L+ LS + P G V + GP G+GKTT+ R + + Sbjct: 401 LSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG---- 456 Query: 373 TIHVGETVCLSYVDQSRDSLEAEKTVW 399 +H+ E C V +S E + Sbjct: 457 -LHLLEVDCYELVAESASHTETKLQAI 482 >gnl|CDD|38089 KOG2878, KOG2878, KOG2878, Predicted kinase [General function prediction only]. Length = 282 Score = 31.2 bits (70), Expect = 0.68 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%) Query: 20 KVLDDINLSFYPDAK-----IGILGPNGAGKSTI-LRIMAGIDKEYNGEAWLATGFTVG- 72 + L F+ D IG GP G+GKST+ + + K+Y E AT +V Sbjct: 14 RFLHKYIPVFFKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSAT-ISVDD 72 Query: 73 -YLPQEPQLDLSKTVKEN 89 YL E Q +L K N Sbjct: 73 FYLTHEGQAELRKKNPNN 90 >gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]. Length = 1163 Score = 31.2 bits (70), Expect = 0.76 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 IE KG KS+ D I+ G ++GPNG+GK+ + + Sbjct: 6 IELKGF-KSFADPTEIN------FSPGFTAIVGPNGSGKSNIVDAI 44 Score = 31.2 bits (70), Expect = 0.83 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Query: 153 NITSLSGGEKRRVALCKLL-----LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV- 206 +++ LSGGEK AL L +P +LDE LD + + + ++E S Sbjct: 1063 SLSLLSGGEKSLTALALLFAIQKYRPAP-FYVLDEVDAALDDANVERVARLIKEMSKETQ 1121 Query: 207 -LMVTH 211 +++TH Sbjct: 1122 FIVITH 1127 >gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]. Length = 440 Score = 31.2 bits (70), Expect = 0.79 Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359 S N+ NL ++GPNG+GKTT+ Sbjct: 7 SLNNFRCFLNLDITFGESETTIIVGPNGSGKTTV 40 Score = 28.5 bits (63), Expect = 5.4 Identities = 10/27 (37%), Positives = 18/27 (66%) Query: 26 NLSFYPDAKIGILGPNGAGKSTILRIM 52 +++F I+GPNG+GK+T+L + Sbjct: 18 DITFGESETTIIVGPNGSGKTTVLDAI 44 >gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 247 Score = 30.9 bits (70), Expect = 0.91 Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 57/203 (28%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96 I+GPNG+GKS ++ A F +G + L SK +K+ +I A Sbjct: 27 IIGPNGSGKSNLMD---------------AISFVLG--EKSSHLR-SKNLKD-LIYR-AR 66 Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV------------------ 138 + Y + EE + I + + +V Sbjct: 67 VGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVK 126 Query: 139 -------QVAIESLHCPADGL----NITSLSGGEKRRVALCKLLLS------SPDLLLLD 181 Q +ES+ ++ +LSGGEK AL LL + +P +LD Sbjct: 127 ARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALA-LLFAIHSYQPAP-FFVLD 184 Query: 182 EPTNHLDAETIAWMEKYLREYSG 204 E LD + + Y+RE +G Sbjct: 185 EVDAALDNTNVGKVASYIREQAG 207 Score = 28.6 bits (64), Expect = 5.1 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 28/118 (23%) Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT---------IH 375 KSY R +I P +IGPNG+GK+ L ++ S I+ Sbjct: 10 KSYKGRHVIG------PFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIY 63 Query: 376 VGET---------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 V Y D + + + S ++NG ++ + Y Sbjct: 64 RARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSS----YRINGKVVSLKEYNEE 117 >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 Score = 30.9 bits (70), Expect = 0.98 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 348 VIGPNGAGKTTLFRMLTGDESPDS 371 V+G +GAGKT+L L+ + S +S Sbjct: 4 VLGLDGAGKTSLLHSLSSERSLES 27 >gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]. Length = 843 Score = 30.6 bits (69), Expect = 1.1 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 9/51 (17%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGIL-GPNGAGKSTILR------IMAGI 55 + V + V +DI+LS + +I ++ GPN GKST LR I+A I Sbjct: 588 VEAVLDNGFVPNDIDLS--GNRRIILITGPNMGGKSTYLRQVALIVILAQI 636 >gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 213 Score = 30.5 bits (69), Expect = 1.2 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 26 NLSFYPDAKIG-ILGPNGAGKSTIL 49 F P + I+GPNG+GKS+I+ Sbjct: 16 ETEFRPGPSLNMIIGPNGSGKSSIV 40 >gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]. Length = 407 Score = 30.7 bits (69), Expect = 1.2 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTT 358 LI+NL + ++ ++GP G GKTT Sbjct: 191 LLSLIENLIVE--QKRVIALVGPTGVGKTT 218 >gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]. Length = 192 Score = 30.3 bits (68), Expect = 1.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 339 KLPPGGIVGVIGPNGAGKTTL 359 + G ++ V+GP+GAGK TL Sbjct: 1 RTFMGRLIAVVGPSGAGKDTL 21 >gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 202 Score = 30.6 bits (69), Expect = 1.3 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 + N L G ++ + GPN GK+T R + Sbjct: 12 ALTKGETFVPN-DINLGSGRLLLITGPNMGGKSTYLRSI 49 Score = 28.6 bits (64), Expect = 4.0 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA 53 H L+ G V +DINL + I GPN GKST LR + Sbjct: 5 GRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIG 50 >gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 Score = 30.2 bits (69), Expect = 1.3 Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 346 VGVIGPNGAGKTTLFRML 363 + ++G +G+GKTTL L Sbjct: 2 IALVGHSGSGKTTLAEAL 19 >gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.. Length = 264 Score = 30.2 bits (68), Expect = 1.4 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 342 PGGIVGVIGPNGAGK-TTLFRMLTGDESPDSGTIHVGETV 380 P GI+ V GP G+GK TTL+ L+ +P+ I V + V Sbjct: 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV 118 >gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 163 Score = 30.4 bits (69), Expect = 1.5 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%) Query: 348 VIGPNGAGKTTLFRMLTGDE----SPDSGT 373 + G AGK++L L G E SP GT Sbjct: 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGT 30 >gnl|CDD|35669 KOG0448, KOG0448, KOG0448, Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]. Length = 749 Score = 30.0 bits (67), Expect = 1.5 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 13/140 (9%) Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWIL 224 C LL + D++L+D P +D+E +W++ + + VL+V + + + Sbjct: 198 DDKCSLLRN--DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH 255 Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKAR 284 +V K + N + A E +E++ +Q + V + +++ + Sbjct: 256 KVSEEKPNIFILN----NKWDASASEPECKEDVLKQI-----HELSVVT--EKEAADRVF 304 Query: 285 IRSYEELVESAAHRHPGNAQ 304 S +E++ + GN + Sbjct: 305 FVSAKEVLNARTQNANGNPE 324 >gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 157 Score = 30.1 bits (68), Expect = 1.6 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%) Query: 348 VIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDD 407 V+G +G GKT+L L G E ++ + + +W D +G + Sbjct: 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKV--KLQIW-DTAGQER 57 Query: 408 IVKLNGHEINS 418 L Sbjct: 58 FRSLRRLYYRG 68 >gnl|CDD|35313 KOG0090, KOG0090, KOG0090, Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]. Length = 238 Score = 29.9 bits (67), Expect = 1.6 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGG 405 V ++G + +GKT+LF L + T S+E + + S Sbjct: 41 VLLVGLSDSGKTSLFTQLITGSHRGTVT-----------------SIEPNEATYRLGSEN 83 Query: 406 DDIVKLNGHE 415 +V L GH Sbjct: 84 VTLVDLPGHS 93 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 30.1 bits (68), Expect = 1.7 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 S +D L L G ++G +G GK+TL L D +G I Sbjct: 145 SAKTGEGLDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192 >gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Length = 213 Score = 29.7 bits (68), Expect = 2.0 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 34 KIGILGPNGAGKSTIL-RIMAGIDKEYN 60 +IGI G +G GK+ +L I + Sbjct: 17 RIGIFGGSGTGKTVLLGMIARNAKADVV 44 >gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 Score = 29.6 bits (66), Expect = 2.2 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%) Query: 153 NITSLSGGEKRRVALCKLLLS------SPDLLLLDEPTNHLDAETIAWMEKYLREYS--G 204 N+ +LSGGEK VAL L+ + +P LLDE LD + ++ + YL+E S Sbjct: 1075 NLDNLSGGEKTLVALA-LIFAIQKYRPAP-FYLLDEIDAALDDQNVSRVANYLKELSKNA 1132 Query: 205 AVLMVTHDRYFLDN 218 ++++ L+ Sbjct: 1133 QFIVISLREEMLEK 1146 Score = 28.8 bits (64), Expect = 4.1 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360 IE +G KSY +++ G ++GPNG+GK+ + Sbjct: 5 IEIEGF-KSYAKTVILP------FSPGFTAIVGPNGSGKSNIL 40 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 29.6 bits (66), Expect = 2.4 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 43/193 (22%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP--- 75 K VL + P K+GI G G+GKS++ + ++G+ + G + LP Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLPLHT 92 Query: 76 ---------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 Q+P L S +++ N+ + DR E + EIA+L++++ Sbjct: 93 LRSRLSIILQDPIL-FSGSIRFNLD---PECKCTDDRLWEAL---------EIAQLKNMV 139 Query: 127 DS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 S GL + TE G N S G+++ L + + +L++DE T Sbjct: 140 KSLPGGLDAVVTE------------GGEN---FSVGQRQLFCLARAFVRKSSILIMDEAT 184 Query: 185 NHLDAETIAWMEK 197 +D T ++K Sbjct: 185 ASIDMATENILQK 197 >gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]. Length = 222 Score = 29.4 bits (66), Expect = 2.7 Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 34 KIGILGPNGAGKSTILRIMA 53 I I GP G+GKST+ +I+A Sbjct: 6 IIAIDGPAGSGKSTVAKILA 25 >gnl|CDD|143815 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a number of different Prosite families together. Length = 174 Score = 29.5 bits (67), Expect = 2.7 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 11/38 (28%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49 L K+ G K + +I ILG + AGK+TIL Sbjct: 5 LLKLLGLNK-----------EMRILILGLDNAGKTTIL 31 >gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]. Length = 149 Score = 29.5 bits (66), Expect = 2.7 Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 340 LPPGGIVGVIGPNGAGKTTLFR 361 L G +V + G GAGKTTL R Sbjct: 22 LKAGDVVLLSGDLGAGKTTLVR 43 >gnl|CDD|133279 cd01878, HflX, HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 Score = 29.3 bits (67), Expect = 3.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDE 367 V ++G AGK+TLF LTG + Sbjct: 43 TVALVGYTNAGKSTLFNALTGAD 65 >gnl|CDD|37414 KOG2203, KOG2203, KOG2203, GTP-binding protein [General function prediction only]. Length = 772 Score = 29.2 bits (65), Expect = 3.2 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 7 YHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54 ++++GL F L D LS+ + ++G +GKST+L + G Sbjct: 16 FNVSGLDY-FQQCVGLRDCGLSY---HVVAVMGSQSSGKSTLLNHLFG 59 >gnl|CDD|30196 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.. Length = 198 Score = 29.0 bits (65), Expect = 3.3 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS----YVDQSRDSLEAEKTV 398 I+G+ G +G+GKTT+ + + + V +S Y D S + LE K Sbjct: 1 IIGIAGGSGSGKTTVAEEI-------IEQLGNPKVVIISQDSYYKDLSHEELEERKNN 51 >gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]. Length = 218 Score = 29.1 bits (65), Expect = 3.4 Identities = 9/20 (45%), Positives = 16/20 (80%) Query: 345 IVGVIGPNGAGKTTLFRMLT 364 I+G+ G +G+GKTT+ + L+ Sbjct: 10 IIGIAGGSGSGKTTVAKELS 29 >gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.. Length = 273 Score = 29.1 bits (65), Expect = 3.5 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL 382 I+GV G +G GK+T R LT D T +CL Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT-----VICL 33 >gnl|CDD|35305 KOG0082, KOG0082, KOG0082, G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]. Length = 354 Score = 29.0 bits (65), Expect = 3.7 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 17/88 (19%) Query: 34 KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93 K+ +LG +GKSTI++ M + GF+ +E L+ + NII+ Sbjct: 35 KLLLLGAGESGKSTIVKQMKILHG---------DGFS-----EEELLEYRPVIYSNIIQS 80 Query: 94 VAHKQAILDRYNELMMNYSEKTEEEIAK 121 + A+L L +N + E A+ Sbjct: 81 LK---ALLRAMETLGINLDDPERENDAQ 105 >gnl|CDD|37568 KOG2357, KOG2357, KOG2357, Uncharacterized conserved protein [Function unknown]. Length = 440 Score = 28.8 bits (64), Expect = 3.7 Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 243 QMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSK 282 K K A + E+ R++A ER+R PK ++ K Sbjct: 401 AEKEKLKASGDPEKQRRKEAKERKRQAKKKQPKMKRLAVK 440 >gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction mechanisms]. Length = 889 Score = 28.7 bits (64), Expect = 3.7 Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 342 PGGIVGVIGPNGAGKTTLFRML 363 GIVG+ G G GKTTL R + Sbjct: 178 DVGIVGIYGMGGVGKTTLARQI 199 >gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]. Length = 398 Score = 28.8 bits (64), Expect = 3.8 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 11/77 (14%) Query: 23 DDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYL---PQEPQ 79 + + S + ++GP +GKST+ +A LA G V + + + Sbjct: 64 ESKSESAGKVGVVMVVGPVDSGKSTLTTYLA--------NKLLARGRKVAIIDADVGQSE 115 Query: 80 LDLSKTVKENIIEGVAH 96 + + E Sbjct: 116 IGPPGFISLAFPESPVI 132 Score = 28.0 bits (62), Expect = 6.7 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 308 PVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364 +L V + + D ++ S G+V V+GP +GK+TL L Sbjct: 40 TTYHQLVEVPEDRSEPLEEIADTW--ESKSESAGKVGVVMVVGPVDSGKSTLTTYLA 94 >gnl|CDD|133296 cd01896, DRG, The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233 Score = 28.6 bits (65), Expect = 3.9 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 346 VGVIGPNGAGKTTLFRMLTGDES 368 V ++G GK+TL LT +S Sbjct: 3 VALVGFPSVGKSTLLSKLTNTKS 25 >gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 500 Score = 28.8 bits (64), Expect = 4.1 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Query: 342 PGGIVGVIGPNGAGKTT-LFRML 363 P G++ V GP G+GKTT L+ L Sbjct: 257 PQGLILVTGPTGSGKTTTLYAAL 279 >gnl|CDD|111395 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 174 Score = 28.7 bits (65), Expect = 4.3 Identities = 9/26 (34%), Positives = 12/26 (46%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPD 370 + + G G+GKTTL L D Sbjct: 2 VTVLTGFLGSGKTTLLEHLLRDNREG 27 >gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 199 Score = 28.7 bits (64), Expect = 4.3 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA 53 K+V +DI++ I I G N +GKST LR + Sbjct: 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIG 46 Score = 28.7 bits (64), Expect = 4.8 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 12/56 (21%) Query: 309 VGKRLGHVVI-EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 K LGH +I K ++ ND + + + G N +GK+T R + Sbjct: 1 EAKNLGHPLIGREKRVA---ND--------IDMEKKNGILITGSNMSGKSTFLRTI 45 >gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein CHL12/CTF18 [Energy production and conversion, Replication, recombination and repair]. Length = 877 Score = 28.5 bits (63), Expect = 4.5 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Query: 18 SKKVLDDIN-LSFYPDAKIGIL-GPNGAGKSTILRIMA 53 K+VLD S P KI +L GP G GK+T+ ++A Sbjct: 310 EKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 >gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).. Length = 179 Score = 28.7 bits (64), Expect = 4.5 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 345 IVGVIGPNGAGKTTLFRML 363 +VG+ GP+G+GKTT + L Sbjct: 1 VVGIAGPSGSGKTTFAKKL 19 >gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]. Length = 191 Score = 28.6 bits (64), Expect = 4.6 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 340 LPPGGIVGVIGPNGAGKTTLFRML 363 + G ++ + GP+G GK+TL + L Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVKAL 24 >gnl|CDD|133280 cd01879, FeoB, Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 158 Score = 28.2 bits (64), Expect = 5.6 Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 1/15 (6%) Query: 351 PNGAGKTTLFRMLTG 365 PN GKTTLF LTG Sbjct: 5 PN-VGKTTLFNALTG 18 >gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 Score = 28.4 bits (64), Expect = 5.6 Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 33 AKIGILGPNGAGKSTILR 50 K I+G +G GKS +L Sbjct: 1 FKFIIIGSSGTGKSCLLH 18 >gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.. Length = 147 Score = 28.2 bits (63), Expect = 5.8 Identities = 10/20 (50%), Positives = 15/20 (75%) Query: 34 KIGILGPNGAGKSTILRIMA 53 I I GP G+GKST+ +++A Sbjct: 1 IIAIDGPAGSGKSTVAKLLA 20 >gnl|CDD|133298 cd01898, Obg, Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 Score = 28.1 bits (64), Expect = 5.9 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%) Query: 33 AKIGILG-PNGAGKSTILR 50 A +G++G PN AGKST+L Sbjct: 1 ADVGLVGLPN-AGKSTLLS 18 >gnl|CDD|177070 CHL00152, rpl32, ribosomal protein L32; Validated. Length = 53 Score = 28.1 bits (63), Expect = 6.0 Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 274 PKARQSKSKARIR 286 PK R SKSK RIR Sbjct: 4 PKKRTSKSKKRIR 16 >gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.. Length = 326 Score = 28.3 bits (63), Expect = 6.0 Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 34 KIGILGPNGAGKSTILRIMA 53 ++GI +G GKST+L ++A Sbjct: 71 RLGIFAGSGVGKSTLLGMIA 90 >gnl|CDD|37613 KOG2402, KOG2402, KOG2402, Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) [Transcription]. Length = 525 Score = 28.0 bits (62), Expect = 6.0 Identities = 14/52 (26%), Positives = 27/52 (51%) Query: 247 KRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHR 298 K + +RE+I+ +ERE S K ++ + K+ +R ++L +S R Sbjct: 76 KYKDEADREKIALMLELERETILFERSKKQKEKRRKSDVREMQQLSDSRKER 127 >gnl|CDD|30719 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]. Length = 653 Score = 28.3 bits (63), Expect = 6.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 346 VGVIGPNGAGKTTLFRMLTG 365 V ++G GKTTLF LTG Sbjct: 6 VALVGNPNVGKTTLFNALTG 25 >gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length = 398 Score = 28.1 bits (62), Expect = 6.4 Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 +LL + I+ ++GP GKTTL ++L Sbjct: 23 RKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLL 57 >gnl|CDD|30828 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]. Length = 697 Score = 27.9 bits (62), Expect = 6.4 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%) Query: 346 VGVIGPNGAGKTTLF-RML--TGDESPDSGTIHVGETVCLSYVDQSRDSLEAEK 396 +G++ AGKTTL R+L TG S G +H G D +E E+ Sbjct: 13 IGIVAHIDAGKTTLTERILFYTGIISK-IGEVHDGAATM--------DWMEQEQ 57 >gnl|CDD|144191 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. Length = 350 Score = 27.9 bits (63), Expect = 6.5 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 19/114 (16%) Query: 34 KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93 K+ +LG +GKSTIL+ M I GF+ E +L+ + +NI++ Sbjct: 30 KLLLLGAGESGKSTILKQMKIIHG---------NGFS-----DEEKLEFRPVIYQNILQS 75 Query: 94 VAHKQAILDRYNELMMNY--SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145 + + ++D L + + E+ + ++ + +++G L E AI++L Sbjct: 76 M---RVLVDAMETLGIPFGDPEREADAAMIIETLAETEGEGPLPKEYADAIKAL 126 >gnl|CDD|145523 pfam02421, FeoB_N, Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 188 Score = 28.2 bits (64), Expect = 6.5 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%) Query: 345 IVGVIG-PNGAGKTTLFRMLTG 365 + ++G PN GKTTLF LTG Sbjct: 1 TIALVGNPN-VGKTTLFNALTG 21 >gnl|CDD|133255 cd00879, Sar1, Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 190 Score = 28.0 bits (63), Expect = 6.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 349 IGPNGAGKTTLFRMLTGDE 367 +G + AGKTTL ML D Sbjct: 25 LGLDNAGKTTLLHMLKDDR 43 >gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.. Length = 226 Score = 27.9 bits (62), Expect = 6.6 Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 340 LPPGGIVGVIGPNGAGKTTL 359 +P G I + G G+GKT L Sbjct: 16 IPTGRITEIFGEFGSGKTQL 35 >gnl|CDD|31303 COG1106, COG1106, Predicted ATPases [General function prediction only]. Length = 371 Score = 28.1 bits (62), Expect = 6.7 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 11/136 (8%) Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG---ETVCLSYVDQSRDSLEAEKTVW 399 G I + G NGAGK+ L L G I G ++ S E++ Sbjct: 22 GKINIIYGANGAGKSNLLEAL----YFLKGLISPGSESPIPFEREINIWNGSYGKEESNL 77 Query: 400 EDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459 + D V++ I+ + FNFK + + G S + +V+ +I K N+ Sbjct: 78 DIFFEQDKEVEI----ISKNTENNKFNFKLQIKFEINGFPSKDESRKVNKIEITKKSKNI 133 Query: 460 ILLDEPTNDLDTETLS 475 + N+ ETL Sbjct: 134 NDFLKIFNEYFVETLL 149 >gnl|CDD|32443 COG2262, HflX, GTPases [General function prediction only]. Length = 411 Score = 27.9 bits (62), Expect = 6.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESP 369 V ++G AGK+TLF LTG + Sbjct: 195 VALVGYTNAGKSTLFNALTGADVY 218 >gnl|CDD|133349 cd04149, Arf6, Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 Score = 27.8 bits (62), Expect = 7.2 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 12/38 (31%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49 LSK+FG+K++ +I +LG + AGK+TIL Sbjct: 1 LSKLFGNKEM------------RILMLGLDAAGKTTIL 26 >gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 Score = 28.0 bits (63), Expect = 7.4 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLE 393 V + G GKT+L ML + + G Y D +D E Sbjct: 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPL-RYTDIRKDEQE 49 >gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]. Length = 752 Score = 27.7 bits (61), Expect = 7.5 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD 366 L KLP G V ++GP G GKT L R + G+ Sbjct: 331 RLGGKLPKG--VLLVGPPGTGKTLLARAVAGE 360 >gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop. Length = 123 Score = 28.0 bits (63), Expect = 7.5 Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 340 LPPGGIVGVIGPNGAGKTTLFR 361 L G +V + G GAGKTT R Sbjct: 12 LKAGDVVLLSGDLGAGKTTFVR 33 >gnl|CDD|36182 KOG0964, KOG0964, KOG0964, Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]. Length = 1200 Score = 27.6 bits (61), Expect = 7.7 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 10/115 (8%) Query: 84 KTVKENIIEGVAHKQAILDRYNELMM----NYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139 K VK+N E + + ++M N ++ E++ + + K ++ T + Sbjct: 1023 KQVKKNFSE--VFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGIS 1080 Query: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKLL----LSSPDLLLLDEPTNHLDAE 190 + + + L + LSGG+K VAL + L DE LDA+ Sbjct: 1081 IKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQ 1135 >gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.. Length = 137 Score = 27.8 bits (62), Expect = 7.8 Identities = 9/26 (34%), Positives = 17/26 (65%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPD 370 ++ + GP+G GK+TL + L + P+ Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 >gnl|CDD|177020 CHL00081, chlI, Mg-protoporyphyrin IX chelatase. Length = 350 Score = 27.6 bits (62), Expect = 7.8 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Query: 32 DAKIG---ILGPNGAGKSTILRIMA 53 D KIG I+G G GKST +R + Sbjct: 35 DPKIGGVMIMGDRGTGKSTTIRALV 59 >gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]. Length = 531 Score = 27.6 bits (61), Expect = 8.0 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 18/57 (31%) Query: 346 VGVIGPNGAGKTTLFRMLTGDE----SPDSGTIHVGETVCLSYVDQSRDSLEAEKTV 398 + ++G GK++L L+ ++ SP GT +RD++EA+ TV Sbjct: 271 IAIVGRPNVGKSSLLNALSREDRSIVSPVPGT--------------TRDAIEAQVTV 313 >gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 758 Score = 27.7 bits (61), Expect = 8.5 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 24/129 (18%) Query: 157 LSGGEKRRVALCKL---LLSSPD-----LLLLDEPTNHLDAETIAWMEKYLREYSG---A 205 LS GEK +A L +PD ++++D+P + D+ + + ++E Sbjct: 530 LSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQ 589 Query: 206 VLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIER 265 V+++TH+ YF + LE+D + +G YS ++ K +S+ K + Sbjct: 590 VIVLTHNTYF---YRDITLELDLKR--YNKGKYSFWIIKKDN--------NVSKIKVYKA 636 Query: 266 ERDWIVSSP 274 + D I +SP Sbjct: 637 DEDPIKNSP 645 >gnl|CDD|35297 KOG0074, KOG0074, KOG0074, GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]. Length = 185 Score = 27.7 bits (61), Expect = 8.7 Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 34 KIGILGPNGAGKSTILRIMAGID 56 +I +LG + AGK+T L+ + D Sbjct: 19 RILLLGLDNAGKTTFLKQLKSED 41 >gnl|CDD|73045 cd03286, ABC_MSH6_euk, MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 218 Score = 27.6 bits (61), Expect = 8.8 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------IMAGI 55 S V +D++L + + GPN GKST+LR IMA + Sbjct: 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM 59 >gnl|CDD|133300 cd01900, YchF, YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274 Score = 27.8 bits (63), Expect = 8.8 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%) Query: 344 GIVGVIGPNGAGKTTLFRMLT 364 GIVG+ PN GK+TLF LT Sbjct: 2 GIVGL--PN-VGKSTLFNALT 19 >gnl|CDD|143922 pfam00154, RecA, recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Length = 322 Score = 27.6 bits (62), Expect = 8.9 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 340 LPPGGIVGVIGPNGAGKTTL 359 LP G I+ + GP +GKTTL Sbjct: 49 LPKGRIIEIYGPESSGKTTL 68 >gnl|CDD|73043 cd03284, ABC_MutS1, MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 216 Score = 27.5 bits (61), Expect = 8.9 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Query: 21 VLDDINLSFYPDAKIGIL-GPNGAGKSTILRIMAGI 55 V +D L P+ +I ++ GPN AGKST LR +A I Sbjct: 20 VPNDTELD--PERQILLITGPNMAGKSTYLRQVALI 53 >gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport, Cytoskeleton]. Length = 185 Score = 27.5 bits (61), Expect = 9.0 Identities = 10/25 (40%), Positives = 18/25 (72%) Query: 34 KIGILGPNGAGKSTILRIMAGIDKE 58 +I ILG + +GK+TI++ + G D + Sbjct: 18 RILILGLDNSGKTTIVKKLLGEDTD 42 >gnl|CDD|111954 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This product is encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein undergoes an intracellular cleavage to form a 79kD protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion. Length = 787 Score = 27.4 bits (61), Expect = 9.1 Identities = 17/69 (24%), Positives = 24/69 (34%) Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDI 402 G +I P A F M T + + E D D + E+T ED Sbjct: 621 QGTAHLITPPPAASQIYFEMRTSLPQSRAELSGLEERAVEDAPDPYEDLISLEETDTEDE 680 Query: 403 SGGDDIVKL 411 S D+ +L Sbjct: 681 STEDEDDEL 689 >gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]. Length = 515 Score = 27.3 bits (60), Expect = 9.6 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 38 LGPNGAGKSTILRIMA-------GIDKEYNGEAWLATGFTVGYLPQEPQLD-LSKTVKEN 89 GP G GK+TI RI+A G E G+ G L ++D S T ++ Sbjct: 44 SGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDD 103 Query: 90 I 90 I Sbjct: 104 I 104 >gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning, Replication, recombination and repair]. Length = 1072 Score = 27.6 bits (61), Expect = 9.6 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Query: 27 LSFYPDAKIG-ILGPNGAGKSTI 48 F P + I+GPNG+GKS+I Sbjct: 36 TEFLPGPSLNMIIGPNGSGKSSI 58 >gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 169 Score = 27.6 bits (62), Expect = 9.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 37 ILGPNGAGKSTILRIMAG 54 +LG G+GKS +LR G Sbjct: 9 VLGAKGSGKSALLRAFLG 26 >gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]. Length = 178 Score = 27.5 bits (61), Expect = 9.8 Identities = 12/20 (60%), Positives = 16/20 (80%) Query: 34 KIGILGPNGAGKSTILRIMA 53 +I ILGP GAGKST+ + +A Sbjct: 2 RILILGPPGAGKSTLAKKLA 21 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.316 0.135 0.391 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,530,602 Number of extensions: 354794 Number of successful extensions: 2510 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2209 Number of HSP's successfully gapped: 657 Length of query: 539 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 441 Effective length of database: 4,146,055 Effective search space: 1828410255 Effective search space used: 1828410255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.1 bits)