RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780273|ref|YP_003064686.1| putative ABC transporter
ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
         (539 letters)



>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
           ATPase domains [General function prediction only].
          Length = 530

 Score =  567 bits (1462), Expect = e-162
 Identities = 238/535 (44%), Positives = 339/535 (63%), Gaps = 14/535 (2%)

Query: 5   FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64
            +  +  LS  +G + +L++++L+  P  +IG++G NGAGKST+L+I+AG  +  +GE  
Sbjct: 2   SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61

Query: 65  LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
              G  VGYL QEP LD  KTV + +IEG    + +L    E     ++  +E +A+L+ 
Sbjct: 62  RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
           +++    W LE   + A+  L  P +   ++SLSGG +RRVAL + LL  PDLLLLDEPT
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181

Query: 185 NHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQM 244
           NHLD E+I W+E YL+ Y G V++V+HDRYFLDNV   ILE+DRGK  PY+GNYS+YL+ 
Sbjct: 182 NHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241

Query: 245 KAKRMAQENREEISRQKAIERERDWIVSSPKARQ--SKSKARIRSYEELVESAAHRHPGN 302
           KA+R+ QE      +QK + +E++WI     A     K+K+RI+  E+L    A   P  
Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVE 301

Query: 303 AQ-----IIIPVGKRLGHVVIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGK 356
                     P GKRLG +V+E + +SK Y+  RLL+ +LSF++  G  + ++GPNGAGK
Sbjct: 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGK 361

Query: 357 TTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEI 416
           +TL ++L G+  P SGT+ VGETV + Y DQ RD L+ +KTV E++S G      +G E 
Sbjct: 362 STLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEG----FPDGDEQ 417

Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
             RAY   F F G DQ++ +G LSGG++ R+ LAK+L    N++LLDEPTN LD E+L A
Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477

Query: 477 LEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531
           LE+AL +F G  +++SHDR FLDR+AT I   E    VE FEG +E+Y + K  R
Sbjct: 478 LEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE--DKVEEFEGGYEDYLEQKKER 530


>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
           [General function prediction only].
          Length = 614

 Score =  253 bits (648), Expect = 7e-68
 Identities = 158/533 (29%), Positives = 256/533 (48%), Gaps = 27/533 (5%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67
            +  LS  F   +++ D+ L      + G++GPNG+GKST LR +AG       E  +  
Sbjct: 77  KIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG------REVPIPE 130

Query: 68  GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNE-LMMNYSEKTEEEIAKLQDII 126
                 L +E +    + V+  ++E   H++  L+   E L     +K ++E+ +L + +
Sbjct: 131 HIDFYLLSREIEPSEKQAVQAVVME-TDHERKRLEYLAEDLAQACDDKEKDELDELYERL 189

Query: 127 DSKGLWDLETE-VQVAIESLHCPADGLNIT-SLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
           D       E +  ++                 LSGG + R AL + L   PDLLLLDEPT
Sbjct: 190 DEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPT 249

Query: 185 NHLDAETIAWMEKYLREY-SGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243
           NHLD E I W+E+YL +Y    +++V+H + FL+ V   I+ +D  K I Y+GNY  Y++
Sbjct: 250 NHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309

Query: 244 MKAKRMAQENREEISRQKAIERERDWIVS----SPK-ARQSKSKARIRSYEE---LVESA 295
            +++    + +    +QK I   +D I      S K  R+++SK +     E   L E  
Sbjct: 310 TRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKV 369

Query: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLI-DNLSFKLPPGGIVGVIGPNGA 354
                       P   ++   VI  + +S  Y+D  +I   L+F +     V ++GPNGA
Sbjct: 370 VGE--KVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGA 427

Query: 355 GKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ-SRDSLEAEKTVWEDISGGDDIVKLNG 413
           GK+TL +++TGD  P  G +       L   +Q   + L+ +K+  E +           
Sbjct: 428 GKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMM---PKFPDEK 484

Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
                R+    F   G  Q   +  LS GQR RV  A++     +++LLDEPTN LD ET
Sbjct: 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544

Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
           + AL +A+  F G  V++SHD   + ++A  I   E NG V  ++G+ E Y++
Sbjct: 545 IDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCE-NGTVTKWDGDIEIYKE 596



 Score =  125 bits (315), Expect = 3e-29
 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 35/238 (14%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP-- 78
           +   +N     D+++ ++GPNGAGKST+L+++ G  +   G     +   +    Q    
Sbjct: 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464

Query: 79  QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV 138
           QLDL K+  E ++                   + ++ E E  +        G + L  + 
Sbjct: 465 QLDLDKSSLEFMMP-----------------KFPDEKELEEMRSI-----LGRFGLTGDA 502

Query: 139 QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKY 198
           QV       P     ++ LS G++RRV   +L +  P LLLLDEPTNHLD ETI  + + 
Sbjct: 503 QV------VP-----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551

Query: 199 LREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREE 256
           + E+ G V++V+HD   +  V   I   + G    + G+   Y +   K+ A+E+  E
Sbjct: 552 INEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKEDERE 609



 Score =  110 bits (276), Expect = 1e-24
 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 27/238 (11%)

Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV------ 376
           +S S++   LI +++ +L  G   G+IGPNG+GK+T  R + G E P    I        
Sbjct: 81  LSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSRE 140

Query: 377 ---GETVCLSYVDQSRDSLEA--EKTVWEDISGGDD------------IVKLNGHEINSR 419
               E   +  V    D      E    +     DD            + +++     ++
Sbjct: 141 IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAK 200

Query: 420 AY--CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
           A        F    Q +++  LSGG R R  LA+ L    +++LLDEPTN LD E +  L
Sbjct: 201 AAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL 260

Query: 478 EDALENF-AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSR 534
           E+ L  +     VI+SH + FL+ + T+I+  + N  + ++EGN+++Y K +      
Sbjct: 261 EEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLD-NKKLIYYEGNYDQYVKTRSELEEN 317


>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
           with duplicated ATPase domains/Translation elongation
           factor EF-3b [Amino acid transport and metabolism,
           Translation, ribosomal structure and biogenesis].
          Length = 582

 Score =  230 bits (589), Expect = 5e-61
 Identities = 153/529 (28%), Positives = 242/529 (45%), Gaps = 51/529 (9%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67
           H+      +G K +L+  NL+     + G++G NG GKST+LR +A      NG+    +
Sbjct: 82  HIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIA------NGQV---S 132

Query: 68  GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
           GF V    QE + D ++ ++  +         +            EK       L++I D
Sbjct: 133 GFHV---EQEVRGDDTEALQSVLESDTERLDFL----------AEEKELLAGLTLEEIYD 179

Query: 128 S--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
               GL     E+Q+               SLSGG + R+AL + L + PDLLLLDEPTN
Sbjct: 180 KILAGL-GFTPEMQL-----------QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTN 227

Query: 186 HLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMK 245
           HLD   +AW+E YL+ +    L+V+HDR FL+ V   I+ ++  K   Y+GNYS +++ K
Sbjct: 228 HLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287

Query: 246 AKRMAQENREEISRQKAIERERDWIVS--SPKARQSKSKARIRSYEELVE-SAAHRHPGN 302
            +    + RE   + K     + +I       AR S  ++RI+   +L    +       
Sbjct: 288 PEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLI 347

Query: 303 AQIIIPVGKRLGHVVIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360
             +    G+ L    +    ++  Y  ++      L         +  +G NG GK+TL 
Sbjct: 348 GFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLL 407

Query: 361 RMLTGDESPDSGTIHVGETVCLSYVDQSR-DSLEAEKTVWEDISGGDDIVKLNGHEINS- 418
           ++L GD +P  G +     + + Y  Q   D L+            D + K    +    
Sbjct: 408 KILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAV------DFMEKSFPGKTEEE 461

Query: 419 -RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
            R +  +F   G    Q I SLSGGQ+ RV  A    +  ++++LDEPTN LD ++L AL
Sbjct: 462 IRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGAL 521

Query: 478 EDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
             AL+NF G  V++SHD  F+  L   +   E +G V   EG  ++Y+K
Sbjct: 522 AKALKNFNGGVVLVSHDEEFISSLCKELWVVE-DGKVTPIEGGIDKYKK 569



 Score =  116 bits (292), Expect = 1e-26
 Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 14/298 (4%)

Query: 237 NYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAA 296
           N     +   KR   +    +  +K  ER         +     SK ++   E     A 
Sbjct: 8   NMEKLGKKGEKR---KEATRVDVKKLTERILAKQEKRFEKSVEGSKIQVVLEEAYASQAM 64

Query: 297 HRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGK 356
            R+ G          +   + I+      +Y  ++L++  +  L  G   G++G NG GK
Sbjct: 65  SRNSGELT---SGEGKSKDIHID--NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGK 119

Query: 357 TTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDI-VKLNGHE 415
           +TL R +    +      HV + V     +  +  LE++    + ++   ++   L   E
Sbjct: 120 STLLRAIA---NGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEE 176

Query: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
           I  +       F    Q Q   SLSGG R R+ LA+ L +  +++LLDEPTN LD   ++
Sbjct: 177 IYDKILAG-LGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVA 235

Query: 476 ALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSS 533
            LE+ L+ +   ++I+SHDR FL+ + T I+  E    +++++GN+ ++ K K     
Sbjct: 236 WLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENL-KLDYYKGNYSQFVKTKPEAKK 292



 Score =  108 bits (272), Expect = 3e-24
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 35/242 (14%)

Query: 12  LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
                   +    + L    D++I  +G NG GKST+L+I+ G      G         +
Sbjct: 370 FEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRI 429

Query: 72  GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL 131
            Y  Q     L K V              +D    +  ++  KTEEEI         + L
Sbjct: 430 KYFAQHHVDFLDKNVNA------------VDF---MEKSFPGKTEEEI--------RRHL 466

Query: 132 WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191
                  ++A++S         I SLSGG+K RVA      ++P LL+LDEPTNHLD ++
Sbjct: 467 GSFGLSGELALQS---------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517

Query: 192 IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG---NYSAYLQMKAKR 248
           +  + K L+ ++G V++V+HD  F+ ++   +  V+ GK  P +G    Y   L  + + 
Sbjct: 518 LGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAELRA 577

Query: 249 MA 250
            A
Sbjct: 578 KA 579


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score =  198 bits (505), Expect = 3e-51
 Identities = 140/539 (25%), Positives = 255/539 (47%), Gaps = 35/539 (6%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
           K +  + +L+     + G++GPNG GK+T+L+ +A           +     V    QE 
Sbjct: 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA------ARALAIPPNIDVLLCEQEV 330

Query: 79  QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID---SKGLWDLE 135
             D S +  + +++    + A+L+   +LM    E       +L+++ D   + G    E
Sbjct: 331 VAD-STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAE 389

Query: 136 TEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193
              +  +  L    +      T  SGG + RV+L + L   P LL+LDEPTNHLD   + 
Sbjct: 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449

Query: 194 WMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQEN 253
           W++ YL+ +   +L+V+HD+ FLD+V   I+ +D  K   Y+GNY+ + +M A++M QE+
Sbjct: 450 WLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKM-QEH 508

Query: 254 REEISRQ--------------KAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRH 299
            +   +Q              K  E++    ++  + +  K            E      
Sbjct: 509 EKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPK 568

Query: 300 PGNAQIIIPVGKRLGHVVIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT 358
             + +   P   +L   V+    ++  Y   + L   L F +     + ++GPNG GK+T
Sbjct: 569 EYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKST 628

Query: 359 LFRMLTGDESPDSGTIHVGETVCLSYVDQ-SRDSLEAEKTVWEDISGGDDIVKLNGHEIN 417
           L ++L G   P+ G +     + + + DQ + ++L  E+T  E +    ++     ++  
Sbjct: 629 LLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNL----PYQ-E 683

Query: 418 SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
           +R     F         +I  LSGGQ+ RV LA++   G +V++LDEPTN+LD E++ AL
Sbjct: 684 ARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDAL 743

Query: 478 EDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVL 536
            +A+  + G  +++SHD   +     ++   E  G ++  +G+FE+Y+K+ L     VL
Sbjct: 744 AEAINEYNGGVIMVSHDERLIVETDCNLWVVENQG-IDEIDGDFEDYKKEVLDALGEVL 801



 Score = 91.3 bits (226), Expect = 7e-19
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 35/211 (16%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
           G K +   ++     D++I I+GPNG GKST+L+++ G     +GE        +G+  Q
Sbjct: 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQ 657

Query: 77  EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136
                                       NE +    E+T  E  + +  +  +     E 
Sbjct: 658 H--------------------------ANEALN--GEETPVEYLQRKFNLPYQ-----EA 684

Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196
             Q+    L   A  + I  LSGG+K RVAL +L L  PD+L+LDEPTN+LD E+I  + 
Sbjct: 685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALA 744

Query: 197 KYLREYSGAVLMVTHDRYFL--DNVTNWILE 225
           + + EY+G V+MV+HD   +   +   W++E
Sbjct: 745 EAINEYNGGVIMVSHDERLIVETDCNLWVVE 775



 Score = 75.9 bits (186), Expect = 3e-14
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 40/331 (12%)

Query: 235 QGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSP----KARQSKSKARIRSYEE 290
                   + K K  A+ N ++ +     +      V       + ++ K +     YE 
Sbjct: 170 ALKNKISKEEKKKAKAKPNYKKAALSMGEKTPEPVPVVENEPEVEGQEKKKQKDQEEYER 229

Query: 291 LVES-AAHRHPGNAQIIIPVGKRLGH-------VVIEAKGISKSYNDRLLIDNLSFKLPP 342
            +E   +    GN   +  + K           + I+ +    S   +LL  N S  +  
Sbjct: 230 QMEGIGSGAELGNHFTVSQLSKSGTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVY 289

Query: 343 GGIVGVIGPNGAGKTTLFRML--------------------TGDESPDSGTIHVGETVCL 382
           G   G++GPNG GKTTL + +                      D +    T+   +   L
Sbjct: 290 GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRL 349

Query: 383 SYVDQSRDSL----EAEKTVWEDISGGDDIVKLNG---HEINSRAYCSAFNFKGGDQQQR 435
           + +++    +    E + T  E +    D ++  G    E  +R   +   F    Q++ 
Sbjct: 350 ALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP 409

Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDR 495
               SGG R RV LA+ L     +++LDEPTN LD   +  L++ L+ +    +I+SHD+
Sbjct: 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469

Query: 496 MFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
            FLD + T I+  + N  + ++ GN+  ++K
Sbjct: 470 GFLDSVCTDIIHLD-NQKLHYYRGNYTLFKK 499


>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3  Elongation factor 3 (EF-3) is a
           cytosolic protein required by fungal ribosomes for in
           vitro protein synthesis and for in vivo growth.  EF-3
           stimulates the binding of the EF-1: GTP: aa-tRNA ternary
           complex to the ribosomal A site by facilitated release
           of the deacylated tRNA from the E site.  The reaction
           requires ATP hydrolysis.  EF-3 contains two ATP
           nucleotide binding sequence (NBS) motifs.  NBSI is
           sufficient for the intrinsic ATPase activity. NBSII is
           essential for the ribosome-stimulated functions..
          Length = 144

 Score =  159 bits (405), Expect = 1e-39
 Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 51/195 (26%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           IE + +SK+Y  +LL+ ++S  + PG  +G++G NGAGK+TL +++ G+  PD G +  G
Sbjct: 1   IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437
            TV + Y +Q                                                  
Sbjct: 61  STVKIGYFEQ-------------------------------------------------- 70

Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMF 497
            LSGG++ R+ LAK+L    N++LLDEPTN LD E++ ALE+AL+ + G  +++SHDR F
Sbjct: 71  -LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF 129

Query: 498 LDRLATHILAFEGNG 512
           LD++AT I+  E   
Sbjct: 130 LDQVATKIIELEDGK 144



 Score =  121 bits (306), Expect = 4e-28
 Identities = 47/74 (63%), Positives = 60/74 (81%)

Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216
           LSGGEK R+AL KLLL +P+LLLLDEPTNHLD E+I  +E+ L+EY G V++V+HDRYFL
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130

Query: 217 DNVTNWILEVDRGK 230
           D V   I+E++ GK
Sbjct: 131 DQVATKIIELEDGK 144



 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query: 8  HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67
           +  LSK +G K +L DI+L+  P  +IG++G NGAGKST+L+++AG  +   G     +
Sbjct: 2  ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61

Query: 68 GFTVGYLPQ 76
             +GY  Q
Sbjct: 62 TVKIGYFEQ 70


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score =  147 bits (372), Expect = 9e-36
 Identities = 125/570 (21%), Positives = 207/570 (36%), Gaps = 134/570 (23%)

Query: 11  GLSKVF----GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE-------- 58
            L+  F    G    + D++    P   +GI+G +G+GKST+   + G+  E        
Sbjct: 10  NLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGE 69

Query: 59  --YNGEAWLAT---------GFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYN 105
              +G   L           G  +  + Q+P   L+   T+ + I E             
Sbjct: 70  VILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA------------ 117

Query: 106 ELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRV 165
            L ++      E   +  ++++  GL D E   +   +             LSGG ++RV
Sbjct: 118 -LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ-------------LSGGMRQRV 163

Query: 166 ALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD----RYFLD 217
            +   L   P LL+ DEPT  LD  T    +  ++   RE   AVL +THD        D
Sbjct: 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELAD 223

Query: 218 NVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKAR 277
            V                      + M    + +    E             I+S+P  +
Sbjct: 224 RV----------------------VVMYKGEIVETGPTE------------EILSNP--Q 247

Query: 278 QSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDR------- 330
              ++  + +   L +    R P         G      ++  + +SK Y  R       
Sbjct: 248 HPYTRGLLAAVPRLGDEKIIRLP-------RRGPLRAEPLLSVRNLSKRYGSRKGLFVRE 300

Query: 331 ----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH-VGETVCLSYV 385
                 +D++SF L  G  +G++G +G+GK+TL R+L G   P SG+I   G+ + L+  
Sbjct: 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGG 360

Query: 386 DQSR-------------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ 432
           +  R              SL    TV + ++    I                    G   
Sbjct: 361 ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP 420

Query: 433 Q---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFA 485
           +   +    LSGGQR RV +A+ L     +++LDEP + LD       L+ L+D  E   
Sbjct: 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480

Query: 486 GCAVIISHDRMFLDRLATHILAFEGNGHVE 515
              + ISHD   +  +A  +        VE
Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVE 510



 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 32/232 (13%)

Query: 316 VVIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD- 370
            ++E + ++  +         + ++SF++ PG I+G++G +G+GK+TL   L G      
Sbjct: 4   PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63

Query: 371 ---SGTIHVGETVCLSYVDQSRDSLEAEKTVW----------EDISGGDDIVKLN-GHEI 416
              SG + +     L   ++    L  ++               ++ GD I +    H  
Sbjct: 64  RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123

Query: 417 NSRAYC-----SAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTN 467
            SRA             G    +R       LSGG R RV +A  L     +++ DEPT 
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183

Query: 468 DLDTET----LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
            LD  T    L  L+D         + I+HD   +  LA  ++       VE
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235


>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
           [Carbohydrate transport and metabolism].
          Length = 500

 Score =  146 bits (370), Expect = 2e-35
 Identities = 128/574 (22%), Positives = 224/574 (39%), Gaps = 120/574 (20%)

Query: 1   MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
           M+   +  + G+SK FG  K LD ++L+  P     +LG NGAGKST+++I++G+    +
Sbjct: 3   MSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS 62

Query: 61  GEAWL------------ATGFTVGYLPQEPQLDLSKTVKENIIEG--VAHKQAILDRYNE 106
           GE  +            A    +  + QE  L  + +V ENI  G     +  ++DR   
Sbjct: 63  GEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA- 121

Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVA 166
             M    +  E +A+L   ID   L                      +  LS  +++ V 
Sbjct: 122 --MR--RRARELLARLGLDIDPDTL----------------------VGDLSIAQRQMVE 155

Query: 167 LCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWI 223
           + + L     +L+LDEPT  L  +    +   +R       A++ ++H    +  + + I
Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI 215

Query: 224 LEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKA 283
             +  G+ +                 A+ + +E+ R          +V            
Sbjct: 216 TVLRDGRVV-----------GTRPTAAETSEDELVR---------LMVG----------- 244

Query: 284 RIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPG 343
             R  E+L         G               V+E + +S        + ++SF +  G
Sbjct: 245 --RELEDLFPEPPEEGIGE-------------PVLEVRNLSGGG----KVRDVSFTVRAG 285

Query: 344 GIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLS-----------YV--DQSR 389
            I+G+ G  GAG+T L R L G     SG I + G+ V +            YV  D+  
Sbjct: 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKS 345

Query: 390 DSLEAEKTVWEDISGGDDIVKLNGHEINSRA-------YCSAFNFKGGDQQQRIGSLSGG 442
           + L  + ++ E+I+            I+ R        Y      K    +Q IG+LSGG
Sbjct: 346 EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGG 405

Query: 443 QRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-ISHDRMFLD 499
            + +V LA+ L +   V++LDEPT  +D    + +   +   A  G A++ IS +   L 
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELL 465

Query: 500 RLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSS 533
            L+  IL       V   +   EE  ++ +  ++
Sbjct: 466 GLSDRILVMREGRIVGELDR--EEATEEAIMAAA 497


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score =  128 bits (322), Expect = 5e-30
 Identities = 121/491 (24%), Positives = 205/491 (41%), Gaps = 77/491 (15%)

Query: 35  IGILGPNGAGKSTILRIMAGIDK----EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENI 90
           +GILGPNG GKST L+I+AG  K     Y           +         +  K + E  
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDE--VIKRFRGTELQNYFKKLYEGE 160

Query: 91  IEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPAD 150
           +    HK     +Y +L+    +    E+ K    +D +G +D E   ++ +E++     
Sbjct: 161 LR-AVHK----PQYVDLIPKVVKGKVGELLKK---VDERGKFD-EVVERLGLENVL---- 207

Query: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVL 207
             +++ LSGGE +RVA+   LL   D+   DEP+++LD        + +RE +     V+
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267

Query: 208 MVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERER 267
           +V HD   LD +++++        I Y G    Y               +S+ K++   R
Sbjct: 268 VVEHDLAVLDYLSDFV-------HILY-GEPGVY-------------GVVSKPKSV---R 303

Query: 268 DWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSY 327
             I    K    +   R R  E   E    R       ++           E   + K+Y
Sbjct: 304 VGINEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTLV-----------EYPDLKKTY 352

Query: 328 ND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386
            D +L ++        G ++G++GPNG GKTT  ++L G   PD G+    E + +SY  
Sbjct: 353 GDFKLEVEEGEIYD--GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKP 407

Query: 387 QSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN--FKGGD-QQQRIGSLSGGQ 443
           Q   S + + TV + +               S  + +         D  ++ +  LSGG+
Sbjct: 408 Q-YISPDYDGTVEDLLR------SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGE 460

Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDRMFLD 499
             RV +A  L    ++ LLDEP+  LD E    +   +  F       A+++ HD   +D
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID 520

Query: 500 RLATHILAFEG 510
            ++  ++ FEG
Sbjct: 521 YVSDRLIVFEG 531



 Score = 80.6 bits (199), Expect = 1e-15
 Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 47/230 (20%)

Query: 2   ARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG 61
           AR  +     L K +G  K L+      Y    IGILGPNG GK+T ++++AG+ K   G
Sbjct: 338 ARDTLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396

Query: 62  EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
                    V Y PQ    D   TV++ +      + AI   +       S   + EI K
Sbjct: 397 SEE---DLKVSYKPQYISPDYDGTVEDLL------RSAIRSAFG------SSYFKTEIVK 441

Query: 122 ---LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
              L+D+++                          +  LSGGE +RVA+   L    DL 
Sbjct: 442 PLNLEDLLER------------------------PVDELSGGELQRVAIAAALSREADLY 477

Query: 179 LLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHDRYFLDNVTNWIL 224
           LLDEP+ +LD E    + K +R          L+V HD Y +D V++ ++
Sbjct: 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527



 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 34/199 (17%)

Query: 338 FKLP---PGGIVGVIGPNGAGKTTLFRMLTG---------DESPDSGTI--HVGETVCLS 383
           ++LP   PG +VG++GPNG GK+T  ++L G         ++ P    +      T   +
Sbjct: 92  YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQN 151

Query: 384 YVDQSRDSLEAEKTVWEDISGGD-----------DIVKLNGHEINSRAYCSAFNFKGGDQ 432
           Y    +   E E          D           +++K                 +    
Sbjct: 152 YF---KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENV-L 207

Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI 490
            + +  LSGG+  RV +A  L    +V   DEP++ LD          +   A  G  VI
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267

Query: 491 -ISHDRMFLDRLA--THIL 506
            + HD   LD L+   HIL
Sbjct: 268 VVEHDLAVLDYLSDFVHIL 286


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  This ABC transport system of the CbiMNQO family
           is involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most of
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 211

 Score =  127 bits (322), Expect = 5e-30
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 44/229 (19%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---------- 66
           G++  LDDI+L+      + I+GPNG+GKST+LR++ G+    +GE  +           
Sbjct: 12  GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLK 71

Query: 67  -TGFTVGYLPQEPQLDLSK-TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
                VG + Q P       TV+E +  G              + N     EE   ++++
Sbjct: 72  ELRRKVGLVFQNPDDQFFGPTVEEEVAFG--------------LENLGLPEEEIEERVEE 117

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
            ++  GL  L                  +  +LSGG+K+RVA+  +L   PD+LLLDEPT
Sbjct: 118 ALELVGLEGLRDR---------------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162

Query: 185 NHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGK 230
             LD      + + L++       +++VTHD   L  + + ++ ++ GK
Sbjct: 163 AGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211



 Score =  115 bits (289), Expect = 4e-26
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 18/212 (8%)

Query: 319 EAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           E K +S SY D  R  +D++S  +  G  V ++GPNG+GK+TL R+L G   P SG + V
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 377 GETVCLS-----------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425
                              V Q+ D      TV E+++ G + + L   EI  R   +  
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120

Query: 426 NFKGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF 484
                  + R   +LSGGQ+ RV +A +L    +++LLDEPT  LD      L + L+  
Sbjct: 121 LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180

Query: 485 AG---CAVIISHDRMFLDRLATHILAFEGNGH 513
                  +I++HD   L  LA  ++  E +G 
Sbjct: 181 KAEGKTIIIVTHDLDLLLELADRVIVLE-DGK 211


>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
           component [Defense mechanisms].
          Length = 293

 Score =  125 bits (316), Expect = 3e-29
 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 46/236 (19%)

Query: 11  GLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69
            L+K +G  K  LD ++    P    G+LGPNGAGK+T+L+I+AG+ K  +GE  +  G+
Sbjct: 9   NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL-GY 67

Query: 70  -----------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
                       +GY+PQEP L    TV+EN           L+ +  L     E+ EE 
Sbjct: 68  DVVKEPAKVRRRIGYVPQEPSLYPELTVREN-----------LEFFARLYGLSKEEAEER 116

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
           I +L   ++  GL D                    + +LSGG K+R+++   LL  P+LL
Sbjct: 117 IEEL---LELFGLED---------------KANKKVRTLSGGMKQRLSIALALLHDPELL 158

Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG----AVLMVTHDRYFLDNVTNWILEVDRGK 230
           +LDEPT+ LD E+   + + LRE +      +L+ TH     + + + ++ ++ GK
Sbjct: 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214



 Score =  119 bits (300), Expect = 2e-27
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 21/227 (9%)

Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           VIE + ++K Y  D+  +D +SF++ PG I G++GPNGAGKTTL ++L G   P SG I 
Sbjct: 4   VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63

Query: 376 V-GETV---------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCS 423
           V G  V          + YV Q   SL  E TV E++     +  L+  E   R      
Sbjct: 64  VLGYDVVKEPAKVRRRIGYVPQE-PSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122

Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
            F  +     +++ +LSGG + R+ +A  L     +++LDEPT+ LD E+   + + L  
Sbjct: 123 LFGLE-DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181

Query: 484 FA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
            A   G  +++S H     + L   +     +G +   EG  EE ++
Sbjct: 182 LAKEGGVTILLSTHILEEAEELCDRV-IILNDGKII-AEGTPEELKE 226


>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 254

 Score =  123 bits (310), Expect = 1e-28
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 38/217 (17%)

Query: 9   MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-- 66
           +  L+  +G++ VL+DI+LS        ++GPNGAGKST+L+ + G+ K  +GE  +   
Sbjct: 7   VENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGK 66

Query: 67  ------TGFTVGYLPQEPQLDLS--KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
                     +GY+PQ+  +D S   TVK+ ++ G   K+    R N          +++
Sbjct: 67  PVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN----------KKD 116

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
             K+ + ++  G+ DL                   I  LSGG+K+RV L + L  +PDLL
Sbjct: 117 KEKVDEALERVGMEDLRDR---------------QIGELSGGQKQRVLLARALAQNPDLL 161

Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHD 212
           LLDEP   +D      +   L+E       VLMVTHD
Sbjct: 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198



 Score =  113 bits (284), Expect = 1e-25
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 21/216 (9%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           +IE + ++ SY +R +++++S  +  G I  +IGPNGAGK+TL + + G   P SG I +
Sbjct: 4   MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63

Query: 377 --------GETVCLSYVDQSRDSLEAE--KTVWEDISGGDDIVKLNGHEINSR---AYCS 423
                    + + + YV Q + S++     TV + +  G    K     +N +       
Sbjct: 64  FGKPVRKRRKRLRIGYVPQ-KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122

Query: 424 AFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
           A    G +    ++IG LSGGQ+ RV LA+ L    +++LLDEP   +D      + D L
Sbjct: 123 ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182

Query: 482 ENFA--GCAVI-ISHDRMFLDRLATHILAFEGNGHV 514
           +     G  V+ ++HD   +      ++    N H+
Sbjct: 183 KELRQEGKTVLMVTHDLGLVMAYFDRVICL--NRHL 216


>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
           transporters.  This family includes transporters
           involved in the uptake of various metallic cations such
           as iron, manganese, and zinc.  The ATPases of this group
           of transporters are very similar to members of
           iron-siderophore uptake family suggesting that they
           share a common ancestor.  The best characterized
           metal-type ABC transporters are the YfeABCD system of Y.
           pestis, the SitABCD system of Salmonella enterica
           serovar Typhimurium, and the SitABCD transporter of
           Shigella flexneri.  Moreover other uncharacterized
           homologs of these metal-type transporters are mainly
           found in pathogens like Haemophilus or enteroinvasive E.
           coli isolates..
          Length = 213

 Score =  121 bits (305), Expect = 6e-28
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 17/211 (8%)

Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377
           E + ++ SY    +++++SF++ PG  + ++GPNGAGK+TL + + G   P SG+I V G
Sbjct: 1   EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 378 ETVCLS-----YVDQSRD-SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS----AFNF 427
           + +        YV Q R    +   +V + +  G            S+A  +    A   
Sbjct: 61  KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKGLFRRLSKADKAKVDEALER 119

Query: 428 KGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485
            G  +   ++IG LSGGQ+ RV LA+ L    +++LLDEP   +D +T   + + L    
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179

Query: 486 --GCAVI-ISHDRMFLDRLATHILAFEGNGH 513
             G  ++ ++HD   +      +L       
Sbjct: 180 REGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210



 Score =  116 bits (293), Expect = 1e-26
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 36/233 (15%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA- 66
            +  L+  +G   VL+D++    P   + I+GPNGAGKST+L+ + G+ K  +G   +  
Sbjct: 1   EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 67  -----TGFTVGYLPQEPQLDLSK--TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
                    +GY+PQ   +D     +V++ ++ G+   + +  R           ++ + 
Sbjct: 61  KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL----------SKADK 110

Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
           AK+ + ++  GL +L                   I  LSGG+++RV L + L+  PDLLL
Sbjct: 111 AKVDEALERVGLSELADR---------------QIGELSGGQQQRVLLARALVQDPDLLL 155

Query: 180 LDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRG 229
           LDEP   +D +T   + + LRE       +L+VTHD   +    + +L ++R 
Sbjct: 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208


>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component [Inorganic ion transport and
           metabolism].
          Length = 248

 Score =  119 bits (300), Expect = 2e-27
 Identities = 73/212 (34%), Positives = 102/212 (48%), Gaps = 39/212 (18%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT--- 67
           G+SK FG  +VL+DINLS      + ILGP+G GKST+LR++AG++K  +GE  L     
Sbjct: 8   GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67

Query: 68  ---GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
              G  +GY+ QE  L    TV +N+  G+           EL      +  E   +L +
Sbjct: 68  TGPGPDIGYVFQEDALLPWLTVLDNVALGL-----------ELRGKSKAEARERAKELLE 116

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
           ++   G  D              P        LSGG ++RVA+ + L + P LLLLDEP 
Sbjct: 117 LVGLAGFED------------KYPHQ------LSGGMRQRVAIARALATRPKLLLLDEPF 158

Query: 185 NHLDAETIA----WMEKYLREYSGAVLMVTHD 212
             LDA T       + +   E    VL+VTHD
Sbjct: 159 GALDALTREELQDELLRLWEETRKTVLLVTHD 190



 Score =  106 bits (266), Expect = 2e-23
 Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 14/191 (7%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
            ++E +G+SKS+    ++++++  +  G  V ++GP+G GK+TL R++ G E P SG + 
Sbjct: 2   ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61

Query: 376 V-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAFNF 427
           + G  V      + YV Q  D+L    TV ++++ G ++   +  E   RA         
Sbjct: 62  LDGRPVTGPGPDIGYVFQE-DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120

Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485
            G  + +    LSGG R RV +A+ L +   ++LLDEP   LD  T   L+D L      
Sbjct: 121 AGF-EDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179

Query: 486 -GCAVI-ISHD 494
               V+ ++HD
Sbjct: 180 TRKTVLLVTHD 190


>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
           ATPase components [General function prediction only].
          Length = 501

 Score =  119 bits (299), Expect = 3e-27
 Identities = 126/547 (23%), Positives = 213/547 (38%), Gaps = 124/547 (22%)

Query: 9   MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------ 62
           M G++K F      DD++LS        +LG NGAGKST+++I+ G+ +  +GE      
Sbjct: 7   MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK 66

Query: 63  ------AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTE 116
                    A    +G + Q   L  + TV ENII G+   +  L    +          
Sbjct: 67  EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA--------- 117

Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
              A+++++ +  GL  ++ + +VA               LS GE++RV + K L     
Sbjct: 118 --RARIKELSERYGL-PVDPDAKVA--------------DLSVGEQQRVEILKALYRGAR 160

Query: 177 LLLLDEPTNHL-DAETIAWME--KYLREYSGAVLMVTHD----RYFLDNVTNWILEVDRG 229
           LL+LDEPT  L   E     E  + L      ++ +TH         D VT  +L   RG
Sbjct: 161 LLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT--VLR--RG 216

Query: 230 KGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYE 289
           K +   G            +A+   EE++    + RE    V     +   +   +    
Sbjct: 217 KVV---GTV--------DPVAETTEEELAEL-MVGRE----VVLRVVKPPSTPGEV---- 256

Query: 290 ELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGIS-KSYNDRLLIDNLSFKLPPGGIVGV 348
                                      V+E + +S K       + ++SF++  G IVG+
Sbjct: 257 ---------------------------VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGI 289

Query: 349 IGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC------------LSYV--DQSRDSLE 393
            G  G G++ L   ++G   P SG I + G+ V             L+YV  D+    L 
Sbjct: 290 AGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349

Query: 394 AEKTVWEDI----SGGDDIVK---LNGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQR 444
            + ++ E++           +   L+   I   A      F+ +         SLSGG +
Sbjct: 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQ 409

Query: 445 GRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL--ENFAGCAVI-ISHDRMFLDRL 501
            ++ LA+ L    ++++  +PT  LD   +  + + L     AG AV+ IS D   +  L
Sbjct: 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILEL 469

Query: 502 ATHILAF 508
           +  I   
Sbjct: 470 SDRIAVI 476



 Score = 87.9 bits (218), Expect = 7e-18
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 26/200 (13%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
             +E +GI+K +   +  D++S  +  G I  ++G NGAGK+TL ++L G   PDSG I 
Sbjct: 3   PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62

Query: 376 V-GETVCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVKLNGHEINS--- 418
           V G+ V +      RD++                 TV E+I  G +  K    +      
Sbjct: 63  VDGKEVRIK---SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA 119

Query: 419 --RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
             +     +     D   ++  LS G++ RV + K L  G  +++LDEPT  L  +    
Sbjct: 120 RIKELSERYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178

Query: 477 LEDALENFA--GCAVI-ISH 493
           L + L   A  G  +I I+H
Sbjct: 179 LFEILRRLAAEGKTIIFITH 198



 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%)

Query: 22  LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-----TGFT------ 70
           + D++        +GI G  G G+S ++  ++G+ K  +G   L         +      
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333

Query: 71  --VGYLPQEPQ---LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
             + Y+P++     L L  ++ EN++ G  H +    R   L      K   E+ +  D+
Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392

Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
                                 P+      SLSGG ++++ L + L   PDLL+  +PT 
Sbjct: 393 --------------------RAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432

Query: 186 HLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEVDRGKGIP 233
            LD   I ++ + L E      AVL+++ D   +  +++ I  +  G+ + 
Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483


>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components [Inorganic ion transport and
           metabolism / Coenzyme metabolism].
          Length = 258

 Score =  114 bits (287), Expect = 6e-26
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 40/217 (18%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65
            LS  +G K +LDD++ S       GILGPNG+GKST+L+ +AG+ K  +GE  L     
Sbjct: 7   NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66

Query: 66  ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
                      + Y+PQ P      TV E ++ G         RY  L + +   ++E+ 
Sbjct: 67  ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG---------RYPHLGL-FGRPSKEDE 116

Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
             +++ ++  GL  L                   +  LSGGE++RV + + L     +LL
Sbjct: 117 EIVEEALELLGLEHL---------------ADRPVDELSGGERQRVLIARALAQETPILL 161

Query: 180 LDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
           LDEPT+HLD     E +  +    RE    V+MV HD
Sbjct: 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198



 Score =  113 bits (285), Expect = 9e-26
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 29/219 (13%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           ++E + +S  Y  + ++D+LSF +P G I G++GPNG+GK+TL + L G   P SG + +
Sbjct: 2   MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61

Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDIS-------GGDDIVKLNGHEINS 418
            G+ +           L+YV QS  +     TV+E +        G          EI  
Sbjct: 62  DGKDIASLSPKELAKKLAYVPQSPSAPFG-LTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120

Query: 419 RA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TE 472
            A       +       + +  LSGG+R RV +A+ L     ++LLDEPT+ LD     E
Sbjct: 121 EALELLGLEHLA----DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176

Query: 473 TLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGN 511
            L  L D         V++ HD     R A H++  +  
Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215


>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
           Transporters-like subgroup.  This family is comprised of
           proteins involved in the transport of apparently
           unrelated solutes and proteins specific for di- and
           oligosaccharides and polyols.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.   ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 213

 Score =  113 bits (285), Expect = 1e-25
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 14/213 (6%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E KG+SK+Y     +D+LS  + PG  + ++GP+G GKTTL R++ G E PDSG I + 
Sbjct: 1   LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60

Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
                    + R+        +L    TV E+I+ G  +  +   EI +R          
Sbjct: 61  GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL 120

Query: 430 GDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENF 484
                R    LSGGQ+ RV LA+ L    +++LLDEP + LD +        L++     
Sbjct: 121 EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180

Query: 485 AGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517
               + ++HD+     LA  I A    G +   
Sbjct: 181 GITTIYVTHDQEEALALADRI-AVMNEGRIVQV 212



 Score =  110 bits (276), Expect = 1e-24
 Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 42/219 (19%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA- 66
            + GLSK +GS + LDD++L+  P   + +LGP+G GK+T+LR++AG+++  +GE  +  
Sbjct: 2   ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61

Query: 67  ---TGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
              TG       +G + Q+  L    TV ENI  G+  +                   E 
Sbjct: 62  RDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG--------------VPKAEI 107

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
            A+++++++  GL  L                      LSGG+++RVAL + L   P LL
Sbjct: 108 RARVRELLELVGLEGLLNR---------------YPHELSGGQQQRVALARALAREPSLL 152

Query: 179 LLDEPTNHLDAETIAWMEKYLREYSGA----VLMVTHDR 213
           LLDEP + LDA+    + + L+E         + VTHD+
Sbjct: 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ 191


>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
           belongs to a multisubunit transporter involved in drug
           resistance (BcrA and DrrA), nodulation, lipid transport,
           and lantibiotic immunity.  In bacteria and archaea,
           these transporters usually include an ATP-binding
           protein and one or two integral membrane proteins.
           Eukaryote systems of the ABCA subfamily display ABC
           domains that are quite similar to this family.  The
           ATP-binding domain shows the highest similarity between
           all members of the ABC transporter family.  ABC
           transporters are a subset of nucleotide hydrolases that
           contain a signature motif, Q-loop, and H-loop/switch
           region, in addition to, the Walker A motif/P-loop and
           Walker B motif commonly found in a number of ATP- and
           GTP-binding and hydrolyzing proteins..
          Length = 173

 Score =  113 bits (285), Expect = 1e-25
 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           IE + +SK Y  +  +D++S  +  G I G++GPNGAGKTTL +++ G   PDSG I V 
Sbjct: 1   IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437
                    +  +       + E+ S  ++   L   E          N K         
Sbjct: 61  GK---DIKKEPEEVKRRIGYLPEEPSLYEN---LTVRE----------NLK--------- 95

Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVII-SHD 494
            LSGG + R+ LA+ L     +++LDEPT+ LD E+     + L      G  +++ SH 
Sbjct: 96  -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154

Query: 495 RMFLDRLATHILAFEGNGHV 514
               +RL   +     NG +
Sbjct: 155 LEEAERLCDRVAILN-NGRI 173



 Score = 78.9 bits (195), Expect = 3e-15
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 10/90 (11%)

Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65
           LSK +G K  LDDI+L+       G+LGPNGAGK+T+++I+ G+ K  +GE  +     
Sbjct: 5  NLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI 64

Query: 66 -----ATGFTVGYLPQEPQLDLSKTVKENI 90
                    +GYLP+EP L  + TV+EN+
Sbjct: 65 KKEPEEVKRRIGYLPEEPSLYENLTVRENL 94



 Score = 72.0 bits (177), Expect = 4e-13
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDR 213
           LSGG K+R+AL + LL  P+LL+LDEPT+ LD E+     + LRE       +L+ +H  
Sbjct: 96  LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155

Query: 214 YFLDNVTNWILEVDRGK 230
              + + + +  ++ G+
Sbjct: 156 EEAERLCDRVAILNNGR 172


>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
           ATP-binding subunits of the bacterial ABC-type nitrate
           and sulfonate transport systems, respectively.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 220

 Score =  112 bits (282), Expect = 2e-25
 Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 43/216 (19%)

Query: 11  GLSKVFGSK----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYN 60
            +SK +G        L+DI+LS      + ++GP+G GKST+LRI+AG+++        +
Sbjct: 5   NVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVD 64

Query: 61  GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120
           GE     G   GY+ Q+  L    TV +N+  G+  +                   E   
Sbjct: 65  GEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV--------------PKAEARE 110

Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
           + +++++  GL   E            P        LSGG ++RVAL + L   PD+LLL
Sbjct: 111 RAEELLELVGLSGFEN---------AYPHQ------LSGGMRQRVALARALAVDPDVLLL 155

Query: 181 DEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
           DEP + LDA T   +++ L    RE    VL+VTHD
Sbjct: 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191



 Score =  102 bits (257), Expect = 2e-22
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 18/209 (8%)

Query: 318 IEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
           +E + +SK+Y         ++++S  +  G  V ++GP+G GK+TL R++ G E P SG 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 374 IHV-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAF 425
           + V GE V        YV Q +D+L    TV ++++ G ++  +   E   RA       
Sbjct: 61  VLVDGEPVTGPGPDRGYVFQ-QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV 119

Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL---- 481
              G  +      LSGG R RV LA+ L    +V+LLDEP + LD  T   L++ L    
Sbjct: 120 GLSGF-ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178

Query: 482 ENFAGCAVIISHDRMFLDRLATHILAFEG 510
                  ++++HD      LA  ++    
Sbjct: 179 RETGKTVLLVTHDIDEAVFLADRVVVLSA 207


>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
           biosynthesis, ATPase and permease components [Energy
           production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score =  111 bits (280), Expect = 4e-25
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 47/242 (19%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE--------------A 63
            K  L D+NL+        ++G +GAGKST+L ++ G      GE              A
Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392

Query: 64  WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
           W      + ++ Q P L  + T++ENI                 ++   + ++EEI    
Sbjct: 393 WRKQ---ISWVSQNPYL-FAGTIRENI-----------------LLARPDASDEEI---I 428

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
             +D  GL +        ++++     G     LSGG+ +R+AL + LLS   LLLLDEP
Sbjct: 429 AALDQAGLLEF-VPKPDGLDTVI----GEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483

Query: 184 TNHLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAY 241
           T HLDAET   + + L+E +    VL++TH      +  + I+ +D G+ +  QG +   
Sbjct: 484 TAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA-DRIVVLDNGRLVE-QGTHEEL 541

Query: 242 LQ 243
            +
Sbjct: 542 SE 543



 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 28/229 (12%)

Query: 316 VVIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
           + I  + +S  Y D +  + +L+  +  G +  ++G +GAGK+TL  +L G  +P  G I
Sbjct: 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378

Query: 375 HVGETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS---RA 420
            V                +S+V Q  +      T+ E+I         +  EI +   +A
Sbjct: 379 RVNGIDLRDLSPEAWRKQISWVSQ--NPYLFAGTIRENILLARP--DASDEEIIAALDQA 434

Query: 421 YCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
               F  K       IG     LSGGQ  R+ LA+ L S  +++LLDEPT  LD ET   
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494

Query: 477 LEDALENFA--GCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           +  AL+  A     ++I+H R+     A  I+  +    VE  +G  EE
Sbjct: 495 ILQALQELAKQKTVLVITH-RLEDAADADRIVVLDNGRLVE--QGTHEE 540


>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 345

 Score =  111 bits (278), Expect = 6e-25
 Identities = 82/340 (24%), Positives = 130/340 (38%), Gaps = 63/340 (18%)

Query: 10  AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNGEA 63
             + K FG+   LDDI+L       + +LGP+GAGKST+LRI+AG++         NG  
Sbjct: 6   NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRV 65

Query: 64  WLATGFT------VGYLPQEPQLDLSKTVKENIIEGV------AHKQAILDRYNELMMNY 111
                        VG++ Q   L    TV +NI  G+        +  I  R  EL+   
Sbjct: 66  LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL--- 122

Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
                  + +L+ + D                    PA       LSGG+++RVAL + L
Sbjct: 123 ------RLVQLEGLADRY------------------PAQ------LSGGQRQRVALARAL 152

Query: 172 LSSPDLLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVD 227
              P +LLLDEP   LDA    E   W+ K         + VTHD+     + + ++ ++
Sbjct: 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212

Query: 228 RGKGIPYQGNYSAYLQ----MKAKRMAQENR--EEISRQKAIERERDWIVSSPKARQSKS 281
           +G+          Y        A+ + + N    E+   +      D  +        K+
Sbjct: 213 QGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVILGQLQVGAHDIGLPLQPLPDGKA 272

Query: 282 KARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAK 321
              +R ++  VE   H        +  V      V +E K
Sbjct: 273 DLYVRPHD--VELLDHGRNTLPATVERVSPLGHTVRVELK 310



 Score =  105 bits (263), Expect = 4e-23
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           I    + K +     +D++S  +  G +V ++GP+GAGK+TL R++ G E+PD+G I + 
Sbjct: 3   IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62

Query: 378 ETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSRAYCS 423
             V     D S  ++   K              TV ++I+ G  + K    E   RA   
Sbjct: 63  GRVLF---DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119

Query: 424 A----FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
                     G   +    LSGGQR RV LA+ L     V+LLDEP   LD +    L  
Sbjct: 120 ELLRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178

Query: 480 AL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
            L    +      V ++HD+     LA  ++     G +E
Sbjct: 179 WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN-QGRIE 217


>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 352

 Score =  110 bits (277), Expect = 8e-25
 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 41/216 (18%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNGEAW 64
            +SK FG    +DDI+L       + +LGP+G GK+T+LR++AG ++        +GE  
Sbjct: 10  NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI 69

Query: 65  LATGFT---VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
                    +G + Q   L    TV+EN+  G             L +    K  E  A+
Sbjct: 70  TDVPPEKRPIGMVFQSYALFPHMTVEENVAFG-------------LKVRKKLKKAEIKAR 116

Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
           +++ ++  GL                         LSGG+++RVAL + L+  P +LLLD
Sbjct: 117 VEEALELVGLEGFADR---------------KPHQLSGGQQQRVALARALVPEPKVLLLD 161

Query: 182 EPTNHLDAETIAWMEKYLREYSGA----VLMVTHDR 213
           EP + LDA+    M K L+E         + VTHD+
Sbjct: 162 EPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197



 Score =  102 bits (256), Expect = 2e-22
 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 19/215 (8%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
            +E + +SKS+ D   +D++S  +  G  V ++GP+G GKTTL RM+ G E P SG I +
Sbjct: 5   ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64

Query: 377 GETVC---------LSYVDQSRDSLEAEKTVWEDISGGDDIV-KLNGHEINSRAYCSAFN 426
                         +  V QS  +L    TV E+++ G  +  KL   EI +R    A  
Sbjct: 65  DGEDITDVPPEKRPIGMVFQSY-ALFPHMTVEENVAFGLKVRKKLKKAEIKARV-EEALE 122

Query: 427 FKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDA 480
             G +    ++   LSGGQ+ RV LA+ L     V+LLDEP + LD     +    L++ 
Sbjct: 123 LVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182

Query: 481 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
                   V ++HD+     ++  I     +G +E
Sbjct: 183 QRELGITFVYVTHDQEEALAMSDRIAVMN-DGRIE 216


>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
           involved in the uptake of siderophores, heme, and
           vitamin B12, are widely conserved in bacteria and
           archaea.  Only very few species lack representatives of
           the siderophore family transporters.  The E. coli BtuCD
           protein is an ABC transporter mediating vitamin B12
           uptake.  The two ATP-binding cassettes (BtuD) are in
           close contact with each other, as are the two
           membrane-spanning subunits (BtuC); this arrangement is
           distinct from that observed for the E. coli lipid
           flippase MsbA.  The BtuC subunits provide 20
           transmembrane helices grouped around a translocation
           pathway that is closed to the cytoplasm by a gate
           region, whereas the dimer arrangement of the BtuD
           subunits resembles the ATP-bound form of the Rad50 DNA
           repair enzyme.  A prominent cytoplasmic loop of BtuC
           forms the contact region with the ATP-binding cassette
           and represent a conserved motif among the ABC
           transporters..
          Length = 180

 Score =  110 bits (278), Expect = 8e-25
 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 44/208 (21%)

Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378
           E + +S  Y  R ++D+LS  +  G IVG++GPNGAGK+TL + L G   P SG I +  
Sbjct: 1   EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-- 58

Query: 379 TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR--------AYCSAFNFKGG 430
                                     G D+  L+  E+  +              +    
Sbjct: 59  -------------------------DGKDLASLSPKELARKIAYVPQALELLGLAHLA-- 91

Query: 431 DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAG 486
              +    LSGG+R RV LA+ L     ++LLDEPT+ LD     E L  L         
Sbjct: 92  --DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149

Query: 487 CAVIISHDRMFLDRLATHILAFEGNGHV 514
             V++ HD     R A  ++  + +G +
Sbjct: 150 TVVMVLHDLNLAARYADRVILLK-DGRI 176



 Score = 68.9 bits (169), Expect = 3e-12
 Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 153 NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLM 208
               LSGGE++RV L + L   P +LLLDEPT+HLD     E +  + +  RE    V+M
Sbjct: 94  PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153

Query: 209 VTHD 212
           V HD
Sbjct: 154 VLHD 157



 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66
           LS  +G + VLDD++LS      +GILGPNGAGKST+L+ +AG+ K  +GE  L 
Sbjct: 4  NLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59


>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 226

 Score =  110 bits (276), Expect = 1e-24
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 53/229 (23%)

Query: 8   HMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
            +  +SK++G        L D+NL       + I+GP+G+GKST+L ++ G+DK  +GE 
Sbjct: 3   ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62

Query: 64  WLA------------TGF---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM 108
            +                    +G++ Q   L    TV EN+               EL 
Sbjct: 63  LINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV---------------ELP 107

Query: 109 MNYSEKTEEEIA-KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167
           +  + K+        +++++  GL D                     + LSGG+++RVA+
Sbjct: 108 LLIAGKSAGRRKRAAEELLEVLGLEDR--------------LLKKKPSELSGGQQQRVAI 153

Query: 168 CKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212
            + L+++P ++L DEPT +LD++T    +  + +  +E    ++MVTHD
Sbjct: 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202



 Score =  102 bits (256), Expect = 2e-22
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 24/202 (11%)

Query: 317 VIEAKGISKSYNDRL----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
           +IE K +SK Y         + +++ ++  G  V ++GP+G+GK+TL  +L G + P SG
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 373 TIHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINS 418
            + +         ++    L  +K              TV E++     I   +      
Sbjct: 61  EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120

Query: 419 RA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
            A         +    +++   LSGGQ+ RV +A+ L +   +IL DEPT +LD++T   
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180

Query: 477 LEDALENFA---GCAVII-SHD 494
           + + L       G  +I+ +HD
Sbjct: 181 VLELLRELNKERGKTIIMVTHD 202


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score =  109 bits (275), Expect = 2e-24
 Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 47/254 (18%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AW 64
              VL+D++L   P  K+ I+G +G+GKST+L+++ G+ K   G              A 
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544

Query: 65  LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
           L     VGY+ Q+P L  S +++ENI  G            E++         ++A   +
Sbjct: 545 LRRQ--VGYVLQDPFL-FSGSIRENIALG-----NPEATDEEIIEAA------QLAGAHE 590

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
            I++  +   +T V            G    +LSGG+++R+AL + LLS P +LLLDE T
Sbjct: 591 FIENLPM-GYDTPV------------GEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637

Query: 185 NHLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYL 242
           + LD ET A + + L +      V+++ H    + +  + I+ +D+GK I  QG++   L
Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSA-DRIIVLDQGK-IVEQGSHEELL 695

Query: 243 QMK---AKRMAQEN 253
                 A+   Q+ 
Sbjct: 696 AQGGLYARLYQQQE 709



 Score =  104 bits (262), Expect = 5e-23
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 26/227 (11%)

Query: 318 IEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           IE + +S  Y   D  ++++LS ++PPG  V ++G +G+GK+TL ++L G   P  G I 
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531

Query: 376 VGET-----------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCS 423
           +                + YV Q  D      ++ E+I+ G+           ++ A   
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQ--DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589

Query: 424 AF--NFKGGDQ---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478
            F  N   G      +   +LSGGQR R+ LA+ L S   ++LLDE T+ LD ET + + 
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649

Query: 479 DALENFAGCA--VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
             L         +II+H R+   R A  I+  +    VE  +G+ EE
Sbjct: 650 QNLLQILQGRTVIIIAH-RLSTIRSADRIIVLDQGKIVE--QGSHEE 693


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 157

 Score =  109 bits (273), Expect = 2e-24
 Identities = 60/195 (30%), Positives = 85/195 (43%), Gaps = 43/195 (22%)

Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378
           E + +S  Y  R  +DN+S  L  G IV ++GPNG+GK+TL R + G   P SG I +  
Sbjct: 1   EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI-- 58

Query: 379 TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGS 438
                                     G DI KL   E+  R                +  
Sbjct: 59  -------------------------DGKDIAKLPLEELRRRIGY-------------VPQ 80

Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-ISHDR 495
           LSGGQR RV LA+ L    +++LLDEPT+ LD  +   L + L   A  G  VI ++HD 
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 496 MFLDRLATHILAFEG 510
              +  A  ++  + 
Sbjct: 141 ELAELAADRVIVLKD 155



 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVT 210
           +  LSGG+++RVAL + LL +PDLLLLDEPT+ LD  +   + + LRE +     V++VT
Sbjct: 78  VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137

Query: 211 HDRYFLDNVTNWILEVDRGK 230
           HD    +   + ++ +  GK
Sbjct: 138 HDPELAELAADRVIVLKDGK 157



 Score = 61.5 bits (149), Expect = 6e-10
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
           LS  +G +  LD+++L+      + ++GPNG+GKST+LR +AG+ K  +GE  +
Sbjct: 4  NLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58


>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
           [Carbohydrate transport and metabolism].
          Length = 338

 Score =  108 bits (271), Expect = 5e-24
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 16/223 (7%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E K + KS+    ++ +++  +  G  V ++GP+G GK+TL RM+ G E P SG I + 
Sbjct: 4   LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63

Query: 378 ETVC---------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK 428
                        ++ V Q+  +L    TV+E+I+ G  +  +   EI+ R    A    
Sbjct: 64  GRDVTDLPPEKRGIAMVFQN-YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLG 122

Query: 429 -GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALEN 483
                 ++   LSGGQR RV LA+ L     V LLDEP ++LD        S ++   E 
Sbjct: 123 LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182

Query: 484 FAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
                + ++HD++    LA  I+    +G ++      E YE+
Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMN-DGRIQQVGTPLELYER 224



 Score = 98.8 bits (246), Expect = 4e-21
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 42/233 (18%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----A 66
            + K FGS +VL D+NL       + +LGP+G GKST+LR++AG+++  +GE  +     
Sbjct: 8   NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67

Query: 67  TGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
           T        +  + Q   L    TV ENI  G+  K   + +          + ++ + +
Sbjct: 68  TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL--KLRGVPK---------AEIDKRVKE 116

Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
           +  ++  + L +              P        LSGG+++RVAL + L+  P + LLD
Sbjct: 117 VAKLLGLEHLLN------------RKPL------QLSGGQRQRVALARALVRKPKVFLLD 158

Query: 182 EPTNHLDAETIAWMEKYL----REYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           EP ++LDA+    M   +           + VTHD+     + + I+ ++ G+
Sbjct: 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGR 211


>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 235

 Score =  106 bits (267), Expect = 1e-23
 Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 45/243 (18%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT------ 70
           G K  L D++L      ++ ++GPNG+GKST+L+++ G+ K  +GE  +    T      
Sbjct: 15  GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74

Query: 71  ------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
                 VG + Q P   L       + + VA            + N     EE   ++ +
Sbjct: 75  LELRQKVGLVFQNPDDQL---FGPTVEDEVAF----------GLENLGLPREEIEERVAE 121

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
            ++  GL +L                     +LSGG+K+RVA+  +L   P++LLLDEPT
Sbjct: 122 ALELVGLEELLDR---------------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166

Query: 185 NHLDAETIAWMEKYLREY----SGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA 240
             LD +    + + L++        +++VTHD   +    + ++ +D GK I   G+ + 
Sbjct: 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK-ILADGDPAE 225

Query: 241 YLQ 243
              
Sbjct: 226 IFN 228



 Score =  103 bits (259), Expect = 9e-23
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 317 VIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           +IEA+ +S  Y  R   + ++S ++  G  V +IGPNG+GK+TL ++L G   P SG + 
Sbjct: 3   MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62

Query: 376 VGETVC------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--Y 421
           V                 +  V Q+ D      TV ++++ G + + L   EI  R    
Sbjct: 63  VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122

Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSAL 477
                       +   +LSGGQ+ RV +A +L  G  ++LLDEPT  LD     E L  L
Sbjct: 123 LELVGL-EELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181

Query: 478 EDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528
           +   E      +I++HD   +   A  ++  +    +   +G+  E   D 
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL--ADGDPAEIFNDA 230


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score =  105 bits (264), Expect = 3e-23
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 45/228 (19%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-----AWLATGF-- 69
              ++LDD++L  Y    I + G NGAGK+T+ +I+AG+ KE +G        +      
Sbjct: 11  KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR 70

Query: 70  -TVGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
            ++GY+ Q+    L + +V+E ++ G                   ++ +    + + ++ 
Sbjct: 71  KSIGYVMQDVDYQLFTDSVREELLLG------------------LKELDAGNEQAETVLK 112

Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
              L+ L+                 +  SLSGG+K+R+A+   LLS  DLL+ DEPT+ L
Sbjct: 113 DLDLYALKER---------------HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157

Query: 188 DAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGKGI 232
           D + +  + + +RE +    AV+++THD  FL  V + +L +  G  +
Sbjct: 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205



 Score =  100 bits (251), Expect = 8e-22
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 15/205 (7%)

Query: 319 EAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
             + IS SY     ++D+LS  L  G I+ + G NGAGKTTL ++L G     SG+I + 
Sbjct: 1   RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60

Query: 378 ETV--------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
                       + YV Q  D      +V E++  G   +     +          +   
Sbjct: 61  GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--ETVLKDLDLYA 118

Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--- 486
             ++  + SLSGGQ+ R+ +A  L SG ++++ DEPT+ LD + +  + + +   A    
Sbjct: 119 LKERHPL-SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177

Query: 487 CAVIISHDRMFLDRLATHILAFEGN 511
             ++I+HD  FL ++   +L     
Sbjct: 178 AVIVITHDYEFLAKVCDRVLLLANG 202


>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
           of a variety of lipid compounds.  Mutations of members
           of ABCA subfamily are associated with human genetic
           diseases, such as, familial high-density lipoprotein
           (HDL) deficiency, neonatal surfactant deficiency,
           degenerative retinopathies, and congenital
           keratinization disorders.  The ABCA1 protein is involved
           in disorders of cholesterol transport and high-density
           lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR)
           protein transports vitamin A derivatives in the outer
           segments of photoreceptor cells, and therefore, performs
           a crucial step in the visual cycle.  The ABCA genes are
           not present in yeast.  However, evolutionary studies of
           ABCA genes indicate that they arose as transporters that
           subsequently duplicated and that certain sets of ABCA
           genes were lost in different eukaryotic lineages..
          Length = 220

 Score =  105 bits (263), Expect = 4e-23
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           ++ + ++K+Y    +  +D+LS  +  G I G++G NGAGKTT  +MLTG+  P SGT +
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60

Query: 376 VGET----------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCS 423
           +               L Y  Q  D+L  E TV E +     +  L   EI         
Sbjct: 61  INGYSIRTDRKAARQSLGYCPQF-DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119

Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
                     +R  +LSGG + ++ LA  L  G +V+LLDEPT+ LD  +  A+ D +  
Sbjct: 120 VLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178

Query: 484 F-AGCAVII-SHDRMFLDRLATHI 505
              G ++I+ +H     + L   I
Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRI 202



 Score = 91.0 bits (226), Expect = 7e-19
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 53/224 (23%)

Query: 8   HMAGLSKVFGS--KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
            +  L+K +    K  +DD++L+ Y     G+LG NGAGK+T L+++ G  +  +G A++
Sbjct: 2   QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61

Query: 66  ----------ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMN 110
                     A   ++GY PQ   L    TV+E++     ++G+   +            
Sbjct: 62  NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEI----------- 110

Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
                +EE+  L  ++      +                      +LSGG KR+++L   
Sbjct: 111 -----KEEVELLLRVLGLTDKANKR------------------ARTLSGGMKRKLSLAIA 147

Query: 171 LLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
           L+  P +LLLDEPT+ LD  +   +   + E     ++++ TH 
Sbjct: 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS 191


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
           Protein Dependent) systems that are largely represented
           in archaea and eubacteria and are primarily involved in
           scavenging solutes from the environment.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 178

 Score =  104 bits (262), Expect = 5e-23
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E K +SK Y  + +++++S  +  G IV ++GP+G+GK+TL R + G E PDSG+I + 
Sbjct: 1   LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437
                   D+          V++D +       L  H        +         +    
Sbjct: 61  GEDLTDLEDELPPLRRRIGMVFQDFA-------LFPH-------LTVL-------ENIAL 99

Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA---GCAVI-ISH 493
            LSGGQ+ RV LA+ L    +V+LLDEPT+ LD  T   +   L++     G  V+ ++H
Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159

Query: 494 DRMFLDRLATHILAFE 509
           D     RLA  ++   
Sbjct: 160 DLDEAARLADRVVVLR 175



 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 153 NIT-SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVL 207
           NI   LSGG+++RVAL + L   PD+LLLDEPT+ LD  T   +   L+    +    V+
Sbjct: 96  NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155

Query: 208 MVTHDRYFLDNVTNWILEVDRGK 230
           +VTHD      + + ++ +  GK
Sbjct: 156 LVTHDLDEAARLADRVVVLRDGK 178



 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 13/99 (13%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNG 61
            +  +SK +G K VL+D++L+      + +LGP+G+GKST+LR +AG+++        +G
Sbjct: 2   ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61

Query: 62  EAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEG 93
           E               +G + Q+  L    TV ENI  G
Sbjct: 62  EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100


>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
           ATP-binding cassette, macrolide-specific ABC-type efflux
           carrier (MacAB), and proteins involved in cell division
           (FtsE), and release of liporoteins from the cytoplasmic
           membrane (LolCDE).  They are clustered together
           phylogenetically.  MacAB is an exporter that confers
           resistance to macrolides, while the LolCDE system is not
           a transporter at all.  An FtsE null mutants showed
           filamentous growth and appeared viable on high salt
           medium only, indicating a role for FtsE in cell division
           and/or salt transport.  The LolCDE complex catalyses the
           release of lipoproteins from the cytoplasmic membrane
           prior to their targeting to the outer membrane..
          Length = 218

 Score =  104 bits (261), Expect = 7e-23
 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 25/220 (11%)

Query: 318 IEAKGISKSYND----RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
           IE K +SK+Y         +  +S  +  G  V ++GP+G+GK+TL  +L G + P SG 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 374 IHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSR 419
           + V  T      ++   +                   T  E++     +  +   E   R
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120

Query: 420 AYCSAFNFKGGDQQ-QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----L 474
           A         GD+       LSGGQ+ RV +A+ L +   +IL DEPT +LD+ET    +
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180

Query: 475 SALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHV 514
             L +  +      V+++HD   L   A  I+    +G +
Sbjct: 181 ELLRELNKEAGTTIVVVTHD-PELAEYADRIIELR-DGKI 218



 Score =  103 bits (259), Expect = 1e-22
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 54/227 (23%)

Query: 11  GLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66
            LSK +G        L  ++LS      + I+GP+G+GKST+L I+ G+D+  +GE  + 
Sbjct: 5   NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64

Query: 67  ------------TGF---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111
                         F    +G++ Q   L    T  EN+               EL +  
Sbjct: 65  GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV---------------ELPLLL 109

Query: 112 SEKTEEEI-AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
           +   ++E   + +++++  GL D            H P+       LSGG+++RVA+ + 
Sbjct: 110 AGVPKKERRERAEELLERVGLGDRLN---------HYPS------ELSGGQQQRVAIARA 154

Query: 171 LLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDR 213
           L + P ++L DEPT +LD+ET    +  + +  +E    +++VTHD 
Sbjct: 155 LANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 240

 Score =  104 bits (260), Expect = 1e-22
 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 43/235 (18%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
            LSK FG K+VL  I+LS      + I+GP+G+GKST+LR + G+++  +G   +     
Sbjct: 7   NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66

Query: 71  ------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
                       VG + Q+  L    TV EN+                 +        E 
Sbjct: 67  GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-------------PVKVKKLSKAEA 113

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
             K  ++++  GL D              PA       LSGG+++RVA+ + L   P ++
Sbjct: 114 REKALELLEKVGLADKAD---------AYPA------QLSGGQQQRVAIARALAMDPKVM 158

Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGK 230
           L DEPT+ LD E +  +   +++ +     +++VTH+  F   V + ++ +D+GK
Sbjct: 159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK 213



 Score = 94.0 bits (234), Expect = 9e-20
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 18/223 (8%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           +IE K +SKS+ D+ ++  +S  +  G +V +IGP+G+GK+TL R L G E PDSG+I V
Sbjct: 2   MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61

Query: 377 GETVCLSYVDQSRD-----------SLEAEKTVWEDISGGDDIV-KLNGHEINSRAYCSA 424
                    D  +            +L    TV E+++     V KL+  E   +A    
Sbjct: 62  DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL 121

Query: 425 FNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
                 D+       LSGGQ+ RV +A+ L     V+L DEPT+ LD E +  + D +++
Sbjct: 122 EKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181

Query: 484 FAG---CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
            A      +I++H+  F   +A  ++  +    +E  EG  EE
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE--EGPPEE 222


>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
           family are similar to members of the Mj1267_LivG family,
           which is involved in the transport of branched-chain
           amino acids.  The genes yhbG and yhbN are located in a
           single operon and may function together in cell envelope
           during biogenesis.  YhbG is the putative ATP-binding
           cassette component and YhbN is the putative
           periplasmic-binding protein.  Depletion of each gene
           product leads to growth arrest, irreversible cell damage
           and loss of viability in E. coli.  The YhbG homolog
           (NtrA) is essential in Rhizobium meliloti, a symbiotic
           nitrogen-fixing bacterium..
          Length = 232

 Score =  103 bits (258), Expect = 2e-22
 Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 65/272 (23%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
            LSK +G +KV++ ++LS      +G+LGPNGAGK+T   ++ G+ K  +G+  L     
Sbjct: 5   NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI 64

Query: 71  ------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
                       +GYLPQE  +    TV+ENI+       A+L+          EK EE 
Sbjct: 65  TKLPMHKRARLGIGYLPQEASIFRKLTVEENIL-------AVLEIRGLSKKEREEKLEEL 117

Query: 119 IA--KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
           +    +  +  SK                          SLSGGE+RRV + + L ++P 
Sbjct: 118 LEEFHITHLRKSKAS------------------------SLSGGERRRVEIARALATNPK 153

Query: 177 LLLLDEPTNHLDAETIAWME---KYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIP 233
            LLLDEP   +D   +  ++   K L++    VL+  H      NV   +   DR     
Sbjct: 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDH------NVRETLSITDR----- 202

Query: 234 YQGNYSAYLQMKAKRMAQENREEISRQKAIER 265
                 AY+  + K +A+   EEI+  + + +
Sbjct: 203 ------AYIIYEGKVLAEGTPEEIAANELVRK 228



 Score = 92.9 bits (231), Expect = 2e-19
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 16/162 (9%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           + A+ +SK Y  R +++ +S  +  G IVG++GPNGAGKTT F M+ G   PDSG I + 
Sbjct: 1   LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60

Query: 378 ET------------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR--AYCS 423
                         + + Y+ Q   S+  + TV E+I    +I  L+  E   +      
Sbjct: 61  GQDITKLPMHKRARLGIGYLPQ-EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE 119

Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465
            F+     ++ +  SLSGG+R RV +A+ L +    +LLDEP
Sbjct: 120 EFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160


>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
           fundamental importance in the cell physiology of
           bacteria because phosphate is required as a nutrient.
           The Pst system of E. coli comprises four distinct
           subunits encoded by the pstS, pstA, pstB, and pstC
           genes.  The PstS protein is a phosphate-binding protein
           located in the periplasmic space. P stA and PstC are
           hydrophobic and they form the transmembrane portion of
           the Pst system.  PstB is the catalytic subunit, which
           couples the energy of ATP hydrolysis to the import of
           phosphate across cellular membranes through the Pst
           system, often referred as ABC-protein.  PstB belongs to
           one of the largest superfamilies of proteins
           characterized by a highly conserved adenosine
           triphosphate (ATP) binding cassette (ABC), which is also
           a nucleotide binding domain (NBD)..
          Length = 227

 Score =  102 bits (257), Expect = 2e-22
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 49/223 (21%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY-----NGEAWL 65
            L+  +G K  L DI+L         ++GP+G GKST+LR++  ++         GE  L
Sbjct: 5   DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64

Query: 66  -------------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112
                             VG + Q+P      ++ +N+  G+                  
Sbjct: 65  DGKDIYDLDVDVLELRRRVGMVFQKPNP-FPGSIYDNVAYGLRLHG-------------- 109

Query: 113 EKTEEEIAKL-QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
            K +EE+ +  ++ +    LWD   EV           D L+   LSGG+++R+ L + L
Sbjct: 110 IKLKEELDERVEEALRKAALWD---EV----------KDRLHALGLSGGQQQRLCLARAL 156

Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
            + P++LLLDEPT+ LD  + A +E+ + E      +++VTH+
Sbjct: 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199



 Score = 98.3 bits (245), Expect = 5e-21
 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 32/226 (14%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DESPDSG 372
           IE + ++  Y D+  + ++S  +P G I  +IGP+G GK+TL R+L         +PD G
Sbjct: 1   IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60

Query: 373 TIHV-GETVCLSYVD------------QSRDSLEAEKTVWEDISGGDDIVKLNG------ 413
            + + G+ +    VD            Q  +      +++++++ G   ++L+G      
Sbjct: 61  EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF--PGSIYDNVAYG---LRLHGIKLKEE 115

Query: 414 -HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
             E    A   A  +     +     LSGGQ+ R+ LA+ L +   V+LLDEPT+ LD  
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175

Query: 473 TLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEW 516
           + + +E+ +         VI++H+     R+A           VE+
Sbjct: 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221


>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
           organic solvents, ATPase component [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score =  102 bits (255), Expect = 3e-22
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 30/235 (12%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
            +IE +G++KS+ DR+++D +   +P G I+ ++G +G+GK+TL R++ G   PD G I 
Sbjct: 7   PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66

Query: 376 V-GETVC-LSYVDQSR---------------DSLEAEKTVWEDIS-GGDDIVKLNGHEIN 417
           + GE +  LS  +                   SL    TV+E+++    +  KL    I 
Sbjct: 67  IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL----TVFENVAFPLREHTKLPESLIR 122

Query: 418 SRAY--CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
                       +G         LSGG R RV LA+ +     ++ LDEPT+ LD  +  
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182

Query: 476 ALEDAL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
            +++ +    +      ++++HD   L  +A  + A   +G V   EG  EE   
Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRV-AVLADGKVIA-EGTPEELLA 235



 Score =  101 bits (253), Expect = 6e-22
 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 50/255 (19%)

Query: 9   MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65
           + G++K FG + +LD ++L       + ILG +G+GKST+LR++ G+ +   GE  +   
Sbjct: 11  VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70

Query: 66  -----------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
                           +G L Q+  L  S TV EN+        A        +  +++ 
Sbjct: 71  DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV--------AF------PLREHTKL 116

Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNI--TSLSGGEKRRVALCKLLL 172
            E  I +L               V + +E +       ++  + LSGG ++RVAL + + 
Sbjct: 117 PESLIREL---------------VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161

Query: 173 SSPDLLLLDEPTNHLD---AETIAWMEKYLREYSGA-VLMVTHDRYFLDNVTNWILEVDR 228
             P+LL LDEPT+ LD   A  I  + + L +  G  V+MVTHD   L  + + +  +  
Sbjct: 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221

Query: 229 GKGIPYQGNYSAYLQ 243
           GK +  +G     L 
Sbjct: 222 GK-VIAEGTPEELLA 235


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
           transporters are involved in drug, peptide, and lipid
           export.  They belong to the subfamily C of the
           ATP-binding cassette (ABC) superfamily of transport
           proteins.  The ABCC subfamily contains transporters with
           a diverse functional spectrum that includes ion
           transport, cell surface receptor, and toxin secretion
           activities.  The MRP-like family, simlar to all ABC
           proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains, each
           composed of six transmembrane (TM) helices, and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 171

 Score =  101 bits (254), Expect = 5e-22
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 42/202 (20%)

Query: 318 IEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           IE K +S SY  R   ++ ++S  + PG  V ++GP+G+GK+TL ++L     P SG I 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCS--AFNFKGGDQ 432
           +                            G D+  L+   +    AY     F F G   
Sbjct: 61  I---------------------------DGVDLRDLDLESLRKNIAYVPQDPFLFSG--- 90

Query: 433 QQRIGS--LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGC--A 488
              I    LSGGQR R+ +A+ L     +++LDE T+ LD ET + + +AL   A     
Sbjct: 91  --TIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTV 148

Query: 489 VIISHDRMFLDRLATHILAFEG 510
           ++I+H R+   R A  I+  + 
Sbjct: 149 IVIAH-RLSTIRDADRIIVLDD 169



 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 153 NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVT 210
           NI  LSGG+++R+A+ + LL  P +L+LDE T+ LD ET A + + LR  +    V+++ 
Sbjct: 95  NI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152

Query: 211 HDRYFLDNVTNWILEVDRGK 230
           H    + +  + I+ +D G+
Sbjct: 153 HRLSTIRDA-DRIIVLDDGR 171



 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 16/90 (17%)

Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------A 63
            K VL D++L+  P  K+ I+GP+G+GKST+L+++  +    +GE              
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72

Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEG 93
           L     + Y+PQ+P L  S T++ENI+ G
Sbjct: 73 SLRK--NIAYVPQDPFL-FSGTIRENILSG 99


>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
           a bacterial ABC-type Na+ transport system called NatAB,
           which catalyzes ATP-dependent electrogenic Na+ extrusion
           without mechanically coupled proton or K+ uptake.  NatB
           possess six putative membrane spanning regions at its
           C-terminus.  In B. subtilus, NatAB is inducible by
           agents such as ethanol and protonophores, which lower
           the protonmotive force across the membrane.  The closest
           sequence similarity to NatA is exhibited by DrrA of the
           two-component daunomycin- and doxorubicin-efflux system.
            Hence, the functional NatAB is presumably assembled
           with two copies of a single ATP-binding protein and a
           single intergral membrane protein..
          Length = 218

 Score =  101 bits (252), Expect = 7e-22
 Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 28/202 (13%)

Query: 317 VIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
           +I A  ++K + D       +D +SF + PG + G++GPNGAGKTT  RML G   PD+G
Sbjct: 1   MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60

Query: 373 TIHVGETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIVKLNGHEIN 417
              V         D  ++  EA +               T  E++     +  L G E+ 
Sbjct: 61  FATV------DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT 114

Query: 418 SRAYCSAFNFKGGD-QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
           +R    A      +   +R+G  S G R +V +A+ L     V+LLDEPT  LD     A
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174

Query: 477 LEDALENF--AGCAVIISHDRM 496
           L + +      G  ++ S   M
Sbjct: 175 LREFIRQLRALGKCILFSTHIM 196



 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 58/227 (25%)

Query: 8   HMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
               L+K F   K     +D ++ +  P    G+LGPNGAGK+T LR++AG+ +   G A
Sbjct: 3   TADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62

Query: 64  WLATGFTVGYLPQEPQLDLS-----------KTVKENI-----IEGVAHKQAILDRYNEL 107
            +  GF V   P E +  L             T +EN+     + G+     +  R  EL
Sbjct: 63  TVD-GFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK-GDELTARLEEL 120

Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167
                           D +  + L D                        S G +++VA+
Sbjct: 121 A---------------DRLGMEELLDRRVG------------------GFSTGMRQKVAI 147

Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTH 211
            + L+  P +LLLDEPT  LD      + +++R+       +L  TH
Sbjct: 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194


>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
           subfamily is involved in the transport of the
           hydrophobic amino acids leucine, isoleucine and valine. 
           MJ1267 is a branched-chain amino acid transporter with
           29% similarity to both the LivF and LivG components of
           the E. coli  branched-chain amino acid transporter.
           MJ1267 contains an insertion from residues 114 to 123
           characteristic of LivG (Leucine-Isoleucine-Valine)
           homologs.  The branched-chain amino acid transporter
           from E. coli comprises a heterodimer of ABCs (LivF and
           LivG), a heterodimer of six-helix TM domains (LivM and
           LivH), and one of two alternative soluble periplasmic
           substrate binding proteins (LivK or LivJ)..
          Length = 236

 Score =  100 bits (251), Expect = 9e-22
 Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 36/238 (15%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
           GL+K FG    LDD++ S  P    G++GPNGAGK+T+  +++G  +  +G      G  
Sbjct: 5   GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD-GED 63

Query: 71  VGYLP-------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
           +  LP             Q P+L    TV EN++     +         L+     +  E
Sbjct: 64  ITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART----GSGLLLARARREERE 119

Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
              + +++++  GL DL             PA       LS G++RR+ + + L + P L
Sbjct: 120 ARERAEELLERVGLADL----------ADRPAG-----ELSYGQQRRLEIARALATDPKL 164

Query: 178 LLLDEPT---NHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232
           LLLDEP    N  + E +A + + LRE    VL+V HD   + ++ + +  +D+G+ I
Sbjct: 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222



 Score = 99.0 bits (247), Expect = 3e-21
 Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 29/237 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           +E +G++K +   + +D++SF + PG I G+IGPNGAGKTTLF +++G   P SG++   
Sbjct: 1   LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60

Query: 377 GETVCLSYVDQ------SR----DSLEAEKTVWEDI----------SGGDDIVKLNGHEI 416
           GE +      +       R      L  E TV E++                 +    E 
Sbjct: 61  GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120

Query: 417 NSRAYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT---NDLDT 471
             RA        G      +  G LS GQ+ R+ +A+ L +   ++LLDEP    N  +T
Sbjct: 121 RERAE-ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179

Query: 472 ETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528
           E L+ L   L       +++ HD   +  LA  +   +  G V   EG  +E   + 
Sbjct: 180 EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLD-QGRV-IAEGTPDEVRNNP 234


>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
           biosynthesis, fused ATPase and permease components
           [Energy production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 573

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 40/239 (16%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG--------- 68
             K L + NL+     K+ ILG +G+GKST+L+++AG      G   L            
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409

Query: 69  --FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
              T+  L Q   L  S T+++N+                 + N     EE  A LQ + 
Sbjct: 410 LRETISVLTQRVHL-FSGTLRDNL----------------RLANPDASDEELWAALQQV- 451

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
                  LE  ++ A + L+          LSGGE+RR+AL + LL    L LLDEPT  
Sbjct: 452 ------GLEKLLESAPDGLNTWLGEGGRR-LSGGERRRLALARALLHDAPLWLLDEPTEG 504

Query: 187 LDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243
           LD  T   +   L E++    +LMVTH    L+ + + I+ +D GK I  +G ++  L 
Sbjct: 505 LDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGK-IIEEGTHAELLA 561



 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 34/233 (14%)

Query: 316 VVIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
             +E + +S +Y       + N +  L  G  V ++G +G+GK+TL ++L G   P  G+
Sbjct: 335 QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394

Query: 374 IHVGETVCLSYVDQS-------------------RDSLEAEKTVWEDISGGD--DIVKLN 412
           I +      S  +Q+                   RD+L        D S  +    ++  
Sbjct: 395 ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQV 451

Query: 413 GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
           G E    +     N   G+  +R   LSGG+R R+ LA+ L     + LLDEPT  LD  
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRR---LSGGERRRLALARALLHDAPLWLLDEPTEGLDPI 508

Query: 473 TLSALEDALENFAGCA--VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           T   +   L   A     ++++H    L+R+    +    NG +   EG   E
Sbjct: 509 TERQVLALLFEHAEGKTLLMVTHRLRGLERMDR--IIVLDNGKII-EEGTHAE 558


>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
           ABC transporters involved in peptide antibiotic
           resistance.  Bacitracin is a dodecapeptide antibiotic
           produced by B. licheniformis and B. subtilis.  The
           synthesis of bacitracin is non-ribosomally catalyzed by
           a multienzyme complex BcrABC.  Bacitracin has potent
           antibiotic activity against gram-positive bacteria.  The
           inhibition of peptidoglycan biosynthesis is the best
           characterized bacterial effect of bacitracin.  The
           bacitracin resistance of B. licheniformis is mediated by
           the ABC transporter Bcr which is composed of two
           identical BcrA ATP-binding subunits and one each of the
           integral membrane proteins, BcrB and BcrC.  B. subtilis
           cells carrying bcr genes on high-copy number plasmids
           develop collateral detergent sensitivity, a similar
           phenomenon in human cells with overexpressed multi-drug
           resistance P-glycoprotein..
          Length = 208

 Score = 99.1 bits (247), Expect = 2e-21
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 29/205 (14%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
            L+K +G K+VLDDI+L        G LGPNGAGK+T ++I+ G+ K  +GE        
Sbjct: 5   DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI------- 57

Query: 71  VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130
                        K+ ++N IE +    A+++       N + +    +      I  K 
Sbjct: 58  ---------TFDGKSYQKN-IEALRRIGALIE-APGFYPNLTARENLRLLARLLGIRKK- 105

Query: 131 LWDLETEVQVAIESLHCPADG-LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
                  +   ++ +         +   S G K+R+ +   LL +PDLL+LDEPTN LD 
Sbjct: 106 ------RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159

Query: 190 ETIAWMEKY---LREYSGAVLMVTH 211
           + I  + +    LR+    VL+ +H
Sbjct: 160 DGIKELRELILSLRDQGITVLISSH 184



 Score = 96.0 bits (239), Expect = 2e-20
 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 8/196 (4%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           ++   ++K+Y  + ++D++S  +  G I G +GPNGAGKTT  +++ G   PDSG I   
Sbjct: 1   LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60

Query: 377 -GETVCLSYVDQSRDSLEAEKTVWEDISGGDDI-VKLNGHEINSRAYCSAFNFKG--GDQ 432
                      +   +L      + +++  +++ +      I  +      +  G     
Sbjct: 61  GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA 120

Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI 490
           ++++   S G + R+ +A  L    ++++LDEPTN LD + +  L + + +    G  V+
Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180

Query: 491 I-SHDRMFLDRLATHI 505
           I SH    + ++A  I
Sbjct: 181 ISSHLLSEIQKVADRI 196


>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
           is an ABC-type transporter encoded by metN of the metNPQ
           operon in Bacillus subtilis that is involved in
           methionine transport.  Other members of this system
           include the MetP permease and  the MetQ substrate
           binding protein.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 233

 Score = 97.9 bits (244), Expect = 6e-21
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 26/230 (11%)

Query: 317 VIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
           +IE K +SK + D       + ++S  +P G I G+IG +GAGK+TL R + G E P SG
Sbjct: 1   MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60

Query: 373 TIHV-GETVCLSYVDQSRD------------SLEAEKTVWEDISGGDDIVKLNGHEINSR 419
           ++ V G  + L    + R             +L + +TV+E+++   +I  +   EI  R
Sbjct: 61  SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120

Query: 420 AYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---- 473
                    G           LSGGQ+ RV +A+ L +   V+L DE T+ LD ET    
Sbjct: 121 VL-ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179

Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           L+ L D         V+I+H+   + R+   +   E    VE  EG  EE
Sbjct: 180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE--EGTVEE 227



 Score = 89.4 bits (222), Expect = 2e-18
 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 61/250 (24%)

Query: 8   HMAGLSKVFGSK----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
            +  +SKVFG        L D++LS       GI+G +GAGKST++R + G+++  +G  
Sbjct: 3   ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV 62

Query: 64  WLA----TGFT----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRY 104
            +     T  +          +G + Q   L  S+TV EN+     I GV  K  I +R 
Sbjct: 63  LVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP-KAEIEERV 121

Query: 105 NELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164
            EL+         E+  L+D  D+                   PA       LSGG+K+R
Sbjct: 122 LELL---------ELVGLEDKADAY------------------PA------QLSGGQKQR 148

Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDRYFLDNVT 220
           V + + L ++P +LL DE T+ LD ET    +A +    RE    ++++TH+   +  + 
Sbjct: 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC 208

Query: 221 NWILEVDRGK 230
           + +  +++G+
Sbjct: 209 DRVAVMEKGE 218


>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
           duplicated ATPase component [General function prediction
           only].
          Length = 534

 Score = 97.6 bits (243), Expect = 7e-21
 Identities = 120/555 (21%), Positives = 194/555 (34%), Gaps = 124/555 (22%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKS----TILRIMA-------GIDKEYNGEAWL 65
           G+ + +  I+        + ++G +G+GKS    +IL ++             ++GE  L
Sbjct: 21  GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80

Query: 66  AT---------GFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
           A          G  +G + QEP   L+   T+ + + E +   + +              
Sbjct: 81  AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRA----------A 130

Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNI--TSLSGGEKRRVALCKLLL 172
                 +L +               V I     P   L+     LSGG+++RV +   L 
Sbjct: 131 ARARALELLE--------------LVGIPE---PEKRLDAYPHELSGGQRQRVMIAMALA 173

Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHD----RYFLDNVTNWIL 224
           + PDLL+ DEPT  LD    A +   L+    E   A+L +THD    R F D V     
Sbjct: 174 NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV----- 228

Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKAR 284
                           Y+    + +     E +         R  + + P          
Sbjct: 229 ----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL--- 269

Query: 285 IRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLL-IDNLSFKLPPG 343
                          P +A +++   + L        G  +   D L  +D +S  L  G
Sbjct: 270 ---------------PEDAPVLL-EVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG 313

Query: 344 GIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR-------------- 389
             +G++G +G+GK+TL   L             G+ +      + R              
Sbjct: 314 QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373

Query: 390 DSLEAEKTVWEDISGGDDI--VKLNGHEINSRAYCSAFNFKGGDQQQRI---GSLSGGQR 444
            SL    TV + I  G  +   KL+  E + R    A    G D   R       SGGQR
Sbjct: 374 GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRV-IEALEEVGLDPATRNRYPHEFSGGQR 432

Query: 445 GRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHDRMFLDR 500
            R+ +A+ L     +ILLDEPT+ LD     + L  L D  +      + ISHD   +  
Sbjct: 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRA 492

Query: 501 LATHILAFEGNGHVE 515
           L   ++       VE
Sbjct: 493 LCHRVIVMRDGKIVE 507



 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 49/240 (20%)

Query: 12  LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE-----YNGEAWLA 66
           L +     + +D I+L+      +G++G +G+GKST+   +  +        ++G+    
Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG 352

Query: 67  TGFTVGYLP---------QEPQLDLS--KTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115
                   P         Q+P   LS   TV + I EG+        R +E  ++ +E+ 
Sbjct: 353 LSRK-EMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL--------RVHEPKLSAAERD 403

Query: 116 EEEIAKLQDI-IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
           +  I  L+++ +D         E                    SGG+++R+A+ + L+  
Sbjct: 404 QRVIEALEEVGLDPATRNRYPHE-------------------FSGGQRQRIAIARALILK 444

Query: 175 PDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           P+L+LLDEPT+ LD    A+ +  +    +++  + L ++HD   +  + + ++ +  GK
Sbjct: 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504



 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 44/224 (19%), Positives = 75/224 (33%), Gaps = 52/224 (23%)

Query: 322 GISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT----TLFRMLTGDESPDSGTIHVG 377
              +       +  +SF +  G  + ++G +G+GK+    ++  +L     P     H  
Sbjct: 15  AFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PSPAAAHPS 69

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGD-------DIVKLNG-HEINSR---AYCSAFN 426
            ++         D L A +     + G          +  LN  H I  +          
Sbjct: 70  GSILF----DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG 125

Query: 427 FKGGDQQQRIGS--------------------LSGGQRGRVHLAKILKSGGNVILLDEPT 466
                 + R                       LSGGQR RV +A  L +  ++++ DEPT
Sbjct: 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPT 185

Query: 467 NDLDTET----LSALEDALENFAGCAVIISHD----RMFLDRLA 502
             LD       L  L++         + I+HD    R F DR+ 
Sbjct: 186 TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY 229


>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
           system, ATPase component.  The biological function of
           this family is not well characterized, but display ABC
           domains similar to members of ABCA subfamily.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 97.1 bits (242), Expect = 1e-20
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 45/242 (18%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EYNG 61
            +  L+K +G K+ LD ++L+       G+LGPNGAGK+T++RI+A +          +G
Sbjct: 2   QLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60

Query: 62  EAWLATGF----TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
           +  L         +GYLPQE  +  + TV+E                    ++Y      
Sbjct: 61  QDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE-------------------FLDY------ 95

Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHC-PADGLNITSLSGGEKRRVALCKLLLSSPD 176
            IA L+ I       +++  V   +E ++        I SLSGG +RRV + + L+  P 
Sbjct: 96  -IAWLKGIPSK----EVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150

Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
           +L++DEPT  LD E        L E      V++ TH    ++++ N +  +++GK + +
Sbjct: 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGK-LVF 209

Query: 235 QG 236
           +G
Sbjct: 210 EG 211



 Score = 93.3 bits (232), Expect = 2e-19
 Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 28/203 (13%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           ++ + ++K Y  +  +D +S  L PG + G++GPNGAGKTTL R+L     P SGTI + 
Sbjct: 1   LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59

Query: 378 ETVCLSYVDQSRDSL---------EAEKTVWEDISGGDDIVKLNG-HEINSRAYC----S 423
               L    + R  +             TV E +   D I  L G      +A       
Sbjct: 60  GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFL---DYIAWLKGIPSKEVKARVDEVLE 116

Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
             N  G   +++IGSLSGG R RV +A+ L    +++++DEPT  LD E      + L  
Sbjct: 117 LVNL-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175

Query: 484 FAGCAVIISHDRMFLDRLATHIL 506
                ++I         L+THI+
Sbjct: 176 LGEDRIVI---------LSTHIV 189


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
           components of the bacterial periplasmic histidine and
           glutamine permeases, repectively.  Histidine permease is
           a multisubunit complex containing the HisQ and HisM
           integral membrane subunits and two copies of HisP.  HisP
           has properties intermediate between those of integral
           and peripheral membrane proteins and is accessible from
           both sides of the membrane, presumably by its
           interaction with HisQ and HisM.  The two HisP subunits
           form a homodimer within the complex.  The domain
           structure of the amino acid uptake systems is typical
           for prokaryote extracellular solute binding
           protein-dependent uptake systems.  All of the amino acid
           uptake systems also have at least one, and in a few
           cases, two extracellular solute binding proteins located
           in the periplasm of Gram-negative bacteria, or attached
           to the cell membrane of Gram-positive bacteria.  The
           best-studied member of the PAAT (polar amino acid
           transport) family is the HisJQMP system of S.
           typhimurium, where HisJ is the extracellular solute
           binding proteins and HisP is the ABC protein..
          Length = 213

 Score = 96.7 bits (241), Expect = 1e-20
 Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 20/215 (9%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           IE K + KS+ D  ++  +   +  G +V +IGP+G+GK+TL R +   E PDSGTI + 
Sbjct: 1   IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60

Query: 378 ETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIV-KLNGHEINSRAYCS 423
                            +  V Q  + L    TV E+I+     V  ++  E   RA   
Sbjct: 61  GLKLTDDKKNINELRQKVGMVFQQFN-LFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119

Query: 424 AFNFKGGDQ-QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482
                  D+       LSGGQ+ RV +A+ L     V+L DEPT+ LD E +  + D ++
Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179

Query: 483 NFA--GCA-VIISHDRMFLDRLATHILAFEGNGHV 514
           + A  G   V+++H+  F   +A  ++  +  G +
Sbjct: 180 DLAEEGMTMVVVTHEMGFAREVADRVIFMDD-GRI 213



 Score = 91.7 bits (228), Expect = 4e-19
 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 44/239 (18%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE----- 62
            +  L K FG   VL  I+L+      + I+GP+G+GKST+LR +  +++  +G      
Sbjct: 2   EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG 61

Query: 63  --------AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
                           VG + Q+  L    TV ENI                 +      
Sbjct: 62  LKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-------------PIKVKGMS 108

Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
             E   +  ++++  GL D              PA       LSGG+++RVA+ + L  +
Sbjct: 109 KAEAEERALELLEKVGLADKAD---------AYPA------QLSGGQQQRVAIARALAMN 153

Query: 175 PDLLLLDEPTNHLDAETIAWMEKYLRE--YSG-AVLMVTHDRYFLDNVTNWILEVDRGK 230
           P ++L DEPT+ LD E +  +   +++    G  +++VTH+  F   V + ++ +D G+
Sbjct: 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 50/223 (22%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           +I A+ +S S   R L+D +S  L PG ++ ++GPNGAGK+TL + L+G+ SPDSG + +
Sbjct: 1   MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60

Query: 377 GETVCLSYVDQSRDSLEAEK------------------TVWEDI-------SGGDDIVKL 411
                        +S   E+                  TV E +         G +  + 
Sbjct: 61  NG--------VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEED 112

Query: 412 NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKIL------KSGGNVILLDEP 465
                 + A        G D +     LSGG++ RV LA++L         G  + LDEP
Sbjct: 113 ERIAAQALAATDLSGLAGRDYRT----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEP 168

Query: 466 TNDLDTETLSALEDALENFA--GCAVI-ISHD----RMFLDRL 501
           T+ LD              A  G AV+ + HD      + DR+
Sbjct: 169 TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRI 211



 Score = 79.9 bits (197), Expect = 2e-15
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 38/223 (17%)

Query: 2   ARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG 61
           A    Y +AG       +++LD ++L   P   + ILGPNGAGKST+L+ ++G   E + 
Sbjct: 4   AENLSYSLAG-------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG---ELSP 53

Query: 62  EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
           ++   T   V  L   P  +L            A  +A+L + + L   +   T +E+ +
Sbjct: 54  DSGEVTLNGVP-LNSWPPEEL------------ARHRAVLPQNSSLAFPF---TVQEVVQ 97

Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGL---NITSLSGGEKRRVALCKLL------L 172
           +  I    G    E E   A         GL   +  +LSGGE++RV L ++L      +
Sbjct: 98  MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157

Query: 173 SSPDLLLLDEPTNHLD---AETIAWMEKYLREYSGAVLMVTHD 212
            S   L LDEPT+ LD         + + L    GAVL V HD
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
           transport system involved in resistant to organic
           solvents; ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score = 95.9 bits (239), Expect = 3e-20
 Identities = 70/238 (29%), Positives = 103/238 (43%), Gaps = 46/238 (19%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65
           GL+K FG + VL  ++L       + I+GP+G+GKST+LR++ G+ +  +GE  +     
Sbjct: 5   GLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI 64

Query: 66  ---------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTE 116
                         +G L Q   L  S TV EN+        A   R +      SE+  
Sbjct: 65  SGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV--------AFPLREHT---RLSEEEI 113

Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
            EI   +  +++ GL   E            PA+      LSGG K+RVAL + L   P+
Sbjct: 114 REIVLEK--LEAVGLRGAEDLY---------PAE------LSGGMKKRVALARALALDPE 156

Query: 177 LLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           LLL DEPT  LD          +    +E     +MVTHD      + + I  +  GK
Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214



 Score = 95.2 bits (237), Expect = 4e-20
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           IE +G++KS+  R ++  +   +  G I+ +IGP+G+GK+TL R++ G   PDSG + + 
Sbjct: 1   IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60

Query: 377 GETVCLSYVDQSRDSLEAEKTVW----------EDISGGDDI-------VKLNGHEINSR 419
           GE +       S   L   +             + ++  +++        +L+  EI   
Sbjct: 61  GEDIS----GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI 116

Query: 420 A-YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478
                      G +      LSGG + RV LA+ L     ++L DEPT  LD      ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176

Query: 479 DAL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           D +    +     +++++HD      +A  I A   +G +   EG  EE
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRI-AVLYDGKIVA-EGTPEE 223


>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
           component [General function prediction only].
          Length = 243

 Score = 95.6 bits (238), Expect = 3e-20
 Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 59/270 (21%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
            L+K +  +KV++D++L       +G+LGPNGAGK+T   ++ G+ +  +G+  L     
Sbjct: 9   NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI 68

Query: 67  TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
           T           +GYLPQE  +    TV++NI+       A+L+     +     K  E 
Sbjct: 69  TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIM-------AVLE-----IREKDLKKAER 116

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
             +L  +++   +  L              A      SLSGGE+RRV + + L ++P  +
Sbjct: 117 KEELDALLEEFHITHLR----------DSKAY-----SLSGGERRRVEIARALAANPKFI 161

Query: 179 LLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQ 235
           LLDEP   +D   +  +++   +L++    VL+  H      NV   +   DR       
Sbjct: 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDH------NVRETLDICDR------- 208

Query: 236 GNYSAYLQMKAKRMAQENREEISRQKAIER 265
               AY+    K +A+ + EEI   + + R
Sbjct: 209 ----AYIISDGKVLAEGSPEEIVNNEDVRR 234



 Score = 90.6 bits (225), Expect = 9e-19
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 18/171 (10%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI- 374
             + A+ ++KSY  R +++++S ++  G IVG++GPNGAGKTT F M+ G   PDSG I 
Sbjct: 3   STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL 62

Query: 375 -----------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
                      H    + + Y+ Q   S+  + TV ++I    +I + +  +   +    
Sbjct: 63  LDDEDITKLPMHKRARLGIGYLPQ-EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD 121

Query: 424 A----FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
           A    F+     +  +  SLSGG+R RV +A+ L +    ILLDEP   +D
Sbjct: 122 ALLEEFHITH-LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score = 95.3 bits (237), Expect = 4e-20
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 56/244 (22%)

Query: 11  GLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL- 65
            LS V+G  K     L++++L       +GI+G +G+GKST+ R++AG++K  +G   L 
Sbjct: 8   NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67

Query: 66  -----------ATGFTVGYLPQEPQLDL--SKTVKENIIEGVAHKQAILDRYNELMMNYS 112
                      A    V  + Q+P   L   +TV   + E +                  
Sbjct: 68  GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---------------- 111

Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKL 170
                            GL   +  +   ++ +  P   L+     LSGG+++R+A+ + 
Sbjct: 112 ----------------HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155

Query: 171 LLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEV 226
           L+  P LL+LDEPT+ LD    A+ +  + +  +E     L ++HD   ++++ + I  +
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215

Query: 227 DRGK 230
           D G+
Sbjct: 216 DNGQ 219



 Score = 93.0 bits (231), Expect = 2e-19
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 21/219 (9%)

Query: 318 IEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
           +  + +S  Y         ++N+S ++  G  +G++G +G+GK+TL R+L G E P SG+
Sbjct: 4   LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 374 IHV-GETVCLSYVDQSR------------DSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420
           I + G+ +      ++              SL   +TV   +S       L+  +     
Sbjct: 64  ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123

Query: 421 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSA 476
                        +R   LSGGQR R+ +A+ L     +++LDEPT+ LD     + L+ 
Sbjct: 124 LLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183

Query: 477 LEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
           L +  +      + ISHD   ++ +   I   +    VE
Sbjct: 184 LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222


>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 339

 Score = 95.3 bits (237), Expect = 4e-20
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 26/223 (11%)

Query: 317 VIEAKGISKSYNDR-----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371
           +IE + +SK++          +D++S ++P G I G+IG +GAGK+TL R++   E P S
Sbjct: 1   MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60

Query: 372 GTIHVGETVCLSY----VDQSRDS---------LEAEKTVWEDISGGDDIVKLNGHEINS 418
           G++ V      +     + Q R           L + +TV+E+++   ++  +   EI  
Sbjct: 61  GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120

Query: 419 RAYCSAFNFKG-GDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET--- 473
           R         G  D+  R    LSGGQ+ RV +A+ L +   ++L DE T+ LD ET   
Sbjct: 121 RVA-ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179

Query: 474 -LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
            L  L+D         V+I+H+   + R+   +   +  G + 
Sbjct: 180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD-QGRLV 221



 Score = 94.2 bits (234), Expect = 8e-20
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 62/251 (24%)

Query: 8   HMAGLSKVFGSKK-----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62
            +  +SK FG         LDD++L        GI+G +GAGKST+LR++  +++  +G 
Sbjct: 3   ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS 62

Query: 63  AWLA----TGFT----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDR 103
            ++     T  +          +G + Q   L  S+TV EN+     + GV  K  I  R
Sbjct: 63  VFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP-KAEIKQR 121

Query: 104 YNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR 163
             EL+         E+  L D  D                    PA       LSGG+K+
Sbjct: 122 VAELL---------ELVGLSDKADRY------------------PA------QLSGGQKQ 148

Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDRYFLDNV 219
           RVA+ + L ++P +LL DE T+ LD ET    +  ++   RE    ++++TH+   +  +
Sbjct: 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI 208

Query: 220 TNWILEVDRGK 230
            + +  +D+G+
Sbjct: 209 CDRVAVLDQGR 219


>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
           protein/mitoxantrone resistance protein, ABC superfamily
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 1381

 Score = 94.9 bits (236), Expect = 4e-20
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 33/292 (11%)

Query: 16  FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75
              +  L DIN        + ++GP G+GKS++L  + G   + +G   +    +V Y+P
Sbjct: 531 ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--SVAYVP 588

Query: 76  QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLE 135
           Q+P +  + TV+ENI+ G        +RY++++   + K + EI    D           
Sbjct: 589 QQPWI-QNGTVRENILFG---SPYDEERYDKVIKACALKKDLEILPFGD----------L 634

Query: 136 TEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW- 194
           TE+            G    +LSGG+K+R++L + +    D+ LLD+P + +DA      
Sbjct: 635 TEI------------GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHI 682

Query: 195 MEKYLREY--SGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQE 252
            E+ +R       V++VTH   FL +  + I+ +  GK I   G Y   L+         
Sbjct: 683 FEECIRGLLRGKTVILVTHQLQFLPHA-DQIIVLKDGK-IVESGTYEELLKSGGDFAELA 740

Query: 253 NREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQ 304
           + EE  +++    +      S +  +S+S   + S EE  +          Q
Sbjct: 741 HEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQ 792



 Score = 81.8 bits (202), Expect = 4e-16
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 49/263 (18%)

Query: 284 RIRSY---EELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYN---DRLLIDNLS 337
           R++ +   EEL   +  R P  A          G   IE K  S S++       + +++
Sbjct: 492 RLKEFLLSEELDPDSVERSPDEA----------GENAIEIKNGSFSWDSESPEPTLKDIN 541

Query: 338 FKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKT 397
           F++  G +V V+GP G+GK++L   + G+    SG++ V  +V  +YV Q         T
Sbjct: 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSV--AYVPQQPWIQNG--T 597

Query: 398 VWEDISGGDDIVKLNGHEINSRAY------CS----AFNFKGGDQQQRIG----SLSGGQ 443
           V E+I        L G   +   Y      C+          GD  + IG    +LSGGQ
Sbjct: 598 VRENI--------LFGSPYDEERYDKVIKACALKKDLEILPFGDLTE-IGERGINLSGGQ 648

Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL-EDALENFAG--CAVIISHDRMFLDR 500
           + R+ LA+ +    ++ LLD+P + +D      + E+ +         ++++H   FL  
Sbjct: 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH 708

Query: 501 LATHILAFEGNGHVEWFEGNFEE 523
            A  I+  + +G +    G +EE
Sbjct: 709 -ADQIIVLK-DGKIVE-SGTYEE 728



 Score = 74.9 bits (184), Expect = 5e-14
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 60/237 (25%)

Query: 17   GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW------------ 64
                VL  I+ +  P  K+GI+G  GAGKS+++  +  + +   GE              
Sbjct: 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210

Query: 65   -LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI---- 119
             L +  ++  +PQ+P L  S TV+ N           LD ++       E +++EI    
Sbjct: 1211 DLRSRLSI--IPQDPVL-FSGTVRFN-----------LDPFD-------EYSDDEIWEAL 1249

Query: 120  --AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
               +L+D++ S     L++EV            G N    S G+++ + L + LL    +
Sbjct: 1250 ERCQLKDVVSSLPG-GLDSEVS---------EGGEN---FSVGQRQLLCLARALLRKSKI 1296

Query: 178  LLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTHDRYFLDNVTNW--ILEVDRGK 230
            L+LDE T  +D ET A ++K +RE      VL + H    L+ V +   +L +D G+
Sbjct: 1297 LVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR---LNTVMDSDRVLVLDAGR 1350



 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 52/244 (21%)

Query: 284  RIRSYEELVESAAHRHPGNAQIIIPVG-KRLGHVVIEAKGISKSYNDRLLIDNLSFKLPP 342
            R+  Y ++   A      +     P      G +  E   +    N  L++  +SF + P
Sbjct: 1109 RVLEYTDIPSEAPLEIEESR---PPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKP 1165

Query: 343  GGIVGVIGPNGAGKTT----LFRMLTGDESPDSGTI--------HVGETV---CLSYVDQ 387
            G  VG++G  GAGK++    LFR++     P  G I         +G       LS + Q
Sbjct: 1166 GEKVGIVGRTGAGKSSLILALFRLV----EPAEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221

Query: 388  S--------RDSLE-----AEKTVWE--DISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ 432
                     R +L+     ++  +WE  +     D+V      ++S         +GG+ 
Sbjct: 1222 DPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVS------EGGE- 1274

Query: 433  QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCAVI- 490
                 + S GQR  + LA+ L     +++LDE T  +D ET + ++  + E F  C V+ 
Sbjct: 1275 -----NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329

Query: 491  ISHD 494
            I+H 
Sbjct: 1330 IAHR 1333


>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 309

 Score = 95.0 bits (236), Expect = 5e-20
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           IE + +SK Y ++  +D+++  +  G  + +IGP+G+GKTT  +M+     P SG I + 
Sbjct: 2   IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61

Query: 377 GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY--CSA 424
           GE +           + YV Q    L    TV E+I+    ++  +   I  RA      
Sbjct: 62  GEDISDLDPVELRRKIGYVIQQ-IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120

Query: 425 FNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-- 481
                 +   R    LSGGQ+ RV +A+ L +   ++L+DEP   LD  T   L++ +  
Sbjct: 121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180

Query: 482 --ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517
             +      V ++HD     +LA  I   +  G +  +
Sbjct: 181 LQKELGKTIVFVTHDIDEALKLADRIAVMDA-GEIVQY 217



 Score = 71.5 bits (175), Expect = 6e-13
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 52/221 (23%)

Query: 12  LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT- 70
           +SK +G+KK +DD+NL+      + ++GP+G+GK+T L+++  + +  +GE  +      
Sbjct: 7   VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66

Query: 71  ----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSEKT 115
                     +GY+ Q+  L    TV ENI     + G   K+ I  R +EL+    +  
Sbjct: 67  DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-KERIKKRADELL----DLV 121

Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
             + ++  D                       P +      LSGG+++RV + + L + P
Sbjct: 122 GLDPSEYAD---------------------RYPHE------LSGGQQQRVGVARALAADP 154

Query: 176 DLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
            +LL+DEP   LD  T   +++ +    +E    ++ VTHD
Sbjct: 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
           specific for the transport of dipeptides, oligopeptides
           (OppD), and nickel (NikDE).  The NikABCDE system of E.
           coli belongs to this family and is composed of the
           periplasmic binding protein NikA, two integral membrane
           components (NikB and NikC), and two ATPase (NikD and
           NikE).  The NikABCDE transporter is synthesized under
           anaerobic conditions to meet the increased demand for
           nickel resulting from hydrogenase synthesis.  The
           molecular mechanism of nickel uptake in many bacteria
           and most archaea is not known.  Many other members of
           this ABC family are also involved in the uptake of
           dipeptides and oligopeptides.  The oligopeptide
           transport system (Opp) is a five-component ABC transport
           composed of a membrane-anchored substrate binding
           proteins (SRP), OppA, two transmembrane proteins, OppB
           and OppC, and two ATP-binding domains, OppD and OppF..
          Length = 228

 Score = 94.4 bits (235), Expect = 6e-20
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 54/237 (22%)

Query: 11  GLSKVF----GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66
            LS  F    GS K LDD++ S      +G++G +G+GKST+ R + G+ K  +G     
Sbjct: 6   NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65

Query: 67  --------------TGFTVGYLPQEPQ--LDLSKTVKENIIEGVAHKQAILDRYNELMMN 110
                             +  + Q+P   L+   T+ E I E +        R +  +  
Sbjct: 66  GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL--------RIHGKLSK 117

Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
              + E  +  L  +   + + +              P +      LSGG+++RVA+ + 
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRY------------PHE------LSGGQRQRVAIARA 159

Query: 171 LLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD----RYFLDNV 219
           L  +P LL+ DEPT+ LD    A+ +  ++K   E    +L +THD        D V
Sbjct: 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV 216



 Score = 81.7 bits (202), Expect = 4e-16
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 33/220 (15%)

Query: 317 VIEAKGISKSYNDRL----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
           ++E K +S S+         +D++SF +  G  +G++G +G+GK+TL R + G   P SG
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60

Query: 373 TIHVGETVCLSYVDQSRD---------------SLEAEKTVWEDISGGDDIVKLNGHEIN 417
           +I       L    + R                SL    T+ E I+   + ++++G    
Sbjct: 61  SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA---EPLRIHGKLSK 117

Query: 418 S---RAYCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
               +          G  ++ +      LSGGQR RV +A+ L     +++ DEPT+ LD
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177

Query: 471 TET----LSALEDALENFAGCAVIISHDRMFLDRLATHIL 506
                  L  L+   E      + I+HD   + ++A  + 
Sbjct: 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217


>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
           transporter and the ATPase component of a molybdate
           transport system that also includes the periplasmic
           binding protein ModA and the membrane protein ModB. ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides and more complex organic
           molecules. The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 214

 Score = 94.5 bits (235), Expect = 7e-20
 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 52/216 (24%)

Query: 18  SKKVLD-DINLSF-YPDAKIGILGPNGAGKSTILRIMAGIDK------EYNGEAWLATGF 69
            K++ D  + + F   +   GI G +GAGKST+LR +AG++K        NG     +  
Sbjct: 7   EKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK 66

Query: 70  T---------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120
                     +G + Q+  L     V+EN+  G+  K+   DR +               
Sbjct: 67  KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISV-------------- 112

Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
              +++D  GL  L                      LSGGEK+RVAL + L + P+LLLL
Sbjct: 113 --DELLDLLGLDHLL---------------NRYPAQLSGGEKQRVALARALAAQPELLLL 155

Query: 181 DEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
           DEP + LD      +   L++     +  V+ VTHD
Sbjct: 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191



 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV--------CLS--- 383
            + F L    + G+ G +GAGK+TL R + G E PD GTI +  TV         L    
Sbjct: 16  KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74

Query: 384 ----YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSL 439
                V Q   +L     V E+++ G    +     I+                +    L
Sbjct: 75  RKIGLVFQQY-ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-DHLLNRYPAQL 132

Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVIISHDR 495
           SGG++ RV LA+ L +   ++LLDEP + LD       L  L+   +N     + ++HD 
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192

Query: 496 MFLDRLATHILAFE 509
              + LA  I+  E
Sbjct: 193 SEAEYLADRIVVME 206


>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 252

 Score = 94.5 bits (235), Expect = 7e-20
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 36/225 (16%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           +I  + +SKSY  ++++D++S  +P GGI  +IGPNGAGK+TL  M++     DSG I +
Sbjct: 1   MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60

Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGG-----------DDIVKLNGH 414
            G  +           LS + Q  + + +  TV + +  G           +D   +N  
Sbjct: 61  DGLELTSTPSKELAKKLSILKQE-NHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE- 118

Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---- 470
                      + +     + +  LSGGQR R  +A +L    + +LLDEP N+LD    
Sbjct: 119 ------AIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171

Query: 471 TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
            + +  L    +      V++ HD  F    + HI+A + NG V 
Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK-NGKVV 215



 Score = 89.1 bits (221), Expect = 3e-18
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 27/232 (11%)

Query: 12  LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
           +SK +G+K VLDD++L         I+GPNGAGKST+L +M+ + K+ +GE  +      
Sbjct: 7   VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID----- 61

Query: 72  GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL 131
                   L+L+ T  + +    A K +IL + N +       T  ++        S+G 
Sbjct: 62  -------GLELTSTPSKEL----AKKLSILKQENHINSRL---TVRDLVGFGRFPYSQGR 107

Query: 132 WDLETEVQV--AIESLHC-PADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
              E    +  AIE LH        +  LSGG+++R  +  +L    D +LLDEP N+LD
Sbjct: 108 LTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167

Query: 189 AETIAWMEKYLR----EYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236
            +    + K LR    E    +++V HD  F    ++ I+ +  GK +  QG
Sbjct: 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGK-VVKQG 218


>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
           exporters. Many non-lantibiotic bacteriocins of lactic
           acid bacteria are produced as precursors which have
           N-terminal leader peptides that share similarities in
           amino acid sequence and contain a conserved processing
           site of two glycine residues in positions -1 and -2.  A
           dedicated ATP-binding cassette (ABC) transporter is
           responsible for the proteolytic cleavage of the leader
           peptides and subsequent translocation of the
           bacteriocins across the cytoplasmic membrane..
          Length = 220

 Score = 93.7 bits (233), Expect = 1e-19
 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 45/228 (19%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF--------- 69
              LD+++L+     K+ I+G  G+GKST+L+++AG+ K  +G + L  G          
Sbjct: 17  IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPAD 75

Query: 70  ---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
               +GY+PQ+  L    T+++NI  G           +E ++  +E     +A + D +
Sbjct: 76  LRRNIGYVPQDVTL-FYGTLRDNITLGAPLAD------DERILRAAE-----LAGVTDFV 123

Query: 127 DS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
           +    GL     ++Q+          G     LSGG+++ VAL + LL+ P +LLLDEPT
Sbjct: 124 NKHPNGL-----DLQI----------GERGRGLSGGQRQAVALARALLNDPPILLLDEPT 168

Query: 185 NHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230
           + +D  +   +++ LR+  G   ++++TH R  L ++ + I+ +D G+
Sbjct: 169 SAMDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRIIVMDSGR 215



 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 44/224 (19%)

Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           IE + +S SY +     +DN+S  +  G  V +IG  G+GK+TL ++L G   P SG++ 
Sbjct: 3   IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62

Query: 376 VGETVC-----------LSYVDQS--------RDSLEAEKTVWED--------ISGGDDI 408
           +  T             + YV Q         RD++     + +D        ++G  D 
Sbjct: 63  LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122

Query: 409 VKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
           V  + +           + + G++ +    LSGGQR  V LA+ L +   ++LLDEPT+ 
Sbjct: 123 VNKHPN---------GLDLQIGERGR---GLSGGQRQAVALARALLNDPPILLLDEPTSA 170

Query: 469 LDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEG 510
           +D  +   L++ L    G    +II+H R  L  L   I+  + 
Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRIIVMDS 213


>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 250

 Score = 93.3 bits (232), Expect = 1e-19
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 35/239 (14%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
           GLSK FG    ++D++L   P   +G++GPNGAGK+T+  ++ G  K  +G      G  
Sbjct: 9   GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR-GRD 67

Query: 71  VGYLP-------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
           +  LP             Q  +L    TV EN+  G   +  +            E+   
Sbjct: 68  ITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR 127

Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
           E A+  ++++  GL +L             PA      +LS G++RR+ + + L + P L
Sbjct: 128 ERAR--ELLEFVGLGELADR----------PA-----GNLSYGQQRRLEIARALATQPKL 170

Query: 178 LLLDEPT---NHLDAETIAWMEKYLREYSG-AVLMVTHDRYFLDNVTNWILEVDRGKGI 232
           LLLDEP    N  + E +A + + LR+  G  +L++ HD   +  + + I+ ++ G+ I
Sbjct: 171 LLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229



 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 46/249 (18%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
            ++E +G+SK +     ++++S ++ PG IVG+IGPNGAGKTTLF ++TG   P SGT+ 
Sbjct: 3   PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV- 61

Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE----------INSRAYCSAF 425
                   +  +    L   +     I+    I +L                        
Sbjct: 62  -------IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLL 114

Query: 426 NFKGGDQQQR----------------------IGSLSGGQRGRVHLAKILKSGGNVILLD 463
                 +++R                       G+LS GQ+ R+ +A+ L +   ++LLD
Sbjct: 115 GRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174

Query: 464 EPT---NDLDTETLSALEDALENFAGCAV-IISHDRMFLDRLATHILAFEGNGHVEWFEG 519
           EP    N  +TE L+ L   L +  G  + +I HD   +  LA  I+     G V   EG
Sbjct: 175 EPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN-YGEV-IAEG 232

Query: 520 NFEEYEKDK 528
             EE   + 
Sbjct: 233 TPEEVRNNP 241


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
           ATPase component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score = 93.3 bits (232), Expect = 1e-19
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 31/241 (12%)

Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           +IE K +SK+Y      + +++ ++  G +V +IGP+GAGK+TL R L G   P SG I 
Sbjct: 3   MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62

Query: 376 V-GETVCLSYVDQSRD------------SLEAEKTVWEDISGGDD--------IVKLNGH 414
             G  +      + R             +L    +V E++  G          +  L   
Sbjct: 63  FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122

Query: 415 EINSRAYCSAFNFKGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
           E  ++A   A    G   +  QR  +LSGGQ+ RV +A+ L     +IL DEP   LD E
Sbjct: 123 EDKAQAL-DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181

Query: 473 T----LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528
           +    +  L+D  +      ++  H      + A  I+  +  G +  F+G   E   + 
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK-AGRI-VFDGPASELTDEA 239

Query: 529 L 529
           L
Sbjct: 240 L 240



 Score = 84.9 bits (210), Expect = 6e-17
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 40/221 (18%)

Query: 11  GLSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL---- 65
            LSK + G  + L D+NL       + I+GP+GAGKST+LR + G+    +GE       
Sbjct: 8   NLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67

Query: 66  ATGFT----------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115
            T             +G + Q+  L    +V EN++ G       L   +     +   +
Sbjct: 68  ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG------RLGYTSTWRSLFGLFS 121

Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
           +E+ A+  D ++  G+  L+   Q A             ++LSGG+++RVA+ + L+  P
Sbjct: 122 KEDKAQALDALERVGI--LDKAYQRA-------------STLSGGQQQRVAIARALVQQP 166

Query: 176 DLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHD 212
            ++L DEP   LD E+   +   L+    E    V++  H 
Sbjct: 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207


>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
           complex cysAWTP involved in sulfate import.  Responsible
           for energy coupling to the transport system.  The
           complex is composed of two ATP-binding proteins (cysA),
           two transmembrane proteins (cysT and cysW), and a
           solute-binding protein (cysP).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 239

 Score = 91.9 bits (228), Expect = 4e-19
 Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 38/235 (16%)

Query: 9   MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65
           +  +SK FG    LDD++L       + +LGP+G+GK+T+LR++AG+++  +G       
Sbjct: 5   VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE 64

Query: 66  -ATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
            AT        VG++ Q   L    TV +N+  G+  K    +R  E  +        ++
Sbjct: 65  DATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPR-SERPPEAEI------RAKV 117

Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
            +L  ++    L D              PA       LSGG+++RVAL + L   P +LL
Sbjct: 118 HELLKLVQLDWLAD------------RYPAQ------LSGGQRQRVALARALAVEPKVLL 159

Query: 180 LDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           LDEP   LDA    E   W+ +   E     + VTHD+     V + ++ +++G+
Sbjct: 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214



 Score = 88.0 bits (218), Expect = 6e-18
 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 20/227 (8%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           IE + +SK + D + +D++S  +P G +V ++GP+G+GKTTL R++ G E PDSGTI  G
Sbjct: 3   IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62

Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKL----NGHEINSRAYCSAF 425
                    Q R+        +L    TV+++++ G  +          EI ++ +    
Sbjct: 63  GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH-ELL 121

Query: 426 NFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
                D    +    LSGGQR RV LA+ L     V+LLDEP   LD +    L   L  
Sbjct: 122 KLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181

Query: 484 FAG----CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
                    V ++HD+     +A  ++     G +E      E Y+ 
Sbjct: 182 LHDELHVTTVFVTHDQEEALEVADRVVVMN-KGRIEQVGTPDEVYDH 227


>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
           resistance, nodulation, lipid transport, and bacteriocin
           and lantibiotic immunity.  In eubacteria and archaea,
           the typical organization consists of one ABC and one or
           two IMs.  Eukaryote systems of the ABCA subfamily
           display ABC domains strongly similar to this family.
           ABC transporters are a large family of proteins involved
           in the transport of a wide variety of different
           compounds, like sugars, ions, peptides and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region in addition to the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 210

 Score = 91.8 bits (228), Expect = 4e-19
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 39/237 (16%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-- 65
            +  ++K FG    LDDI+ S       G+LGPNGAGK+T +R++ GI    +GE     
Sbjct: 2   EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61

Query: 66  -----ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120
                A    +GYLP+E               G+  K  ++D+   L      K EE   
Sbjct: 62  KPLDIAARNRIGYLPEE--------------RGLYPKMKVIDQLVYLAQLKGLKKEEARR 107

Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
           ++ + ++   L +   +                +  LS G +++V     ++  P+LL+L
Sbjct: 108 RIDEWLERLELSEYANKR---------------VEELSKGNQQKVQFIAAVIHDPELLIL 152

Query: 181 DEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
           DEP + LD   +  ++  +RE + A   V++ TH    ++ + + +L +++G+ + Y
Sbjct: 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209



 Score = 91.0 bits (226), Expect = 8e-19
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E + ++K +     +D++SF +  G I G++GPNGAGKTT  RM+ G   PDSG +   
Sbjct: 1   LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF- 59

Query: 378 ETVCLSYVDQSR-DSLEAEKTVWEDISGGDDIV------KLNGHEINSRA--YCSAFNFK 428
           +   L    ++R   L  E+ ++  +   D +V       L   E   R   +       
Sbjct: 60  DGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL- 118

Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--G 486
                +R+  LS G + +V     +     +++LDEP + LD   +  L+D +   A  G
Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178

Query: 487 CAVIISHDRM-FLDRLATHIL 506
             VI+S  +M  ++ L   +L
Sbjct: 179 KTVILSTHQMELVEELCDRVL 199


>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
           component of the spermidine/putrescine-preferential
           uptake system consisting of PotA, -B, -C, and -D.  PotA
           has two domains with the N-terminal domain containing
           the ATPase activity and the residues required for
           homodimerization with PotA and heterdimerization with
           PotB.  ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds, like sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 232

 Score = 91.8 bits (228), Expect = 4e-19
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 21/168 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           IE + +SK Y   + +D +S  +  G    ++GP+G GKTTL R++ G E+P SG I + 
Sbjct: 1   IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60

Query: 378 E--------------TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
                          TV  +Y      +L    TV+E+I+ G  + KL   EI  R   +
Sbjct: 61  GKDITNLPPHKRPVNTVFQNY------ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEA 114

Query: 424 AFNFKGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
               +      R    LSGGQ+ RV +A+ L +   V+LLDEP   LD
Sbjct: 115 LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162



 Score = 82.9 bits (205), Expect = 2e-16
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 48/243 (19%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
            +SK +G    LD ++L         +LGP+G GK+T+LR++AG +   +GE  L     
Sbjct: 5   NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64

Query: 71  VGYLPQEPQLDL---------SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI-A 120
               P +  ++            TV ENI  G+  K+                 + EI  
Sbjct: 65  TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---------------LPKAEIKE 109

Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
           ++ + +D   L                       + LSGG+++RVA+ + L++ P +LLL
Sbjct: 110 RVAEALDLVQLEGYANR---------------KPSQLSGGQQQRVAIARALVNEPKVLLL 154

Query: 181 DEPTNHLDAETIAWMEKYLREYSGAV----LMVTHDRYFLDNVTNWILEVDRGK----GI 232
           DEP   LD +    M+  L+     +    + VTHD+     +++ I  +++GK    G 
Sbjct: 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214

Query: 233 PYQ 235
           P +
Sbjct: 215 PEE 217


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
           transport system.  Phosphonates are a class of
           organophosphorus compounds characterized by a chemically
           stable carbon-to-phosphorus (C-P) bond.  Phosphonates
           are widespread among naturally occurring compounds in
           all kingdoms of wildlife, but only procaryotic
           microorganisms are able to cleave this bond.  Certain
           bacteria such as E. coli can use alkylphosphonates as a
           phosphorus source.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 241

 Score = 91.4 bits (227), Expect = 6e-19
 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 33/243 (13%)

Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE + +SK+Y N +  + ++S  + PG  V +IGP+GAGK+TL R L G   P SG++ +
Sbjct: 1   IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60

Query: 377 GETVCLSYVDQSRDSLEAE-KTVWED------ISGGDDIVKLNGHEINSRAYCSAFN-FK 428
             T       ++   L  +   +++       +S  +++  L+G       + S F  F 
Sbjct: 61  DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV--LSGRLGRRSTWRSLFGLFP 118

Query: 429 GGDQQ----------------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
             ++Q                QR   LSGGQ+ RV +A+ L     +IL DEP   LD  
Sbjct: 119 KEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPA 178

Query: 473 TLSALEDALENFA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528
           +   + D L+      G  VI+S H        A  I+  + +G +  F+G   E   + 
Sbjct: 179 SSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRI-VFDGPPAELTDEV 236

Query: 529 LSR 531
           L  
Sbjct: 237 LDE 239



 Score = 84.4 bits (209), Expect = 7e-17
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 11  GLSKVFGS-KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-ATG 68
            LSK + + KK L D++LS  P   + ++GP+GAGKST+LR + G+ +  +G   +  T 
Sbjct: 5   NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64

Query: 69  FT-------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115
                          +G + Q+  L    +V EN++ G       L R +     +    
Sbjct: 65  INKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR------LGRRSTWRSLFGLFP 118

Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
           +EE  +    ++  GL          ++  +  AD      LSGG+++RVA+ + L+  P
Sbjct: 119 KEEKQRALAALERVGL----------LDKAYQRAD-----QLSGGQQQRVAIARALMQQP 163

Query: 176 DLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212
            L+L DEP   LD  +    +  +++  RE    V++  H 
Sbjct: 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204


>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
           superfamily [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 1228

 Score = 91.0 bits (226), Expect = 8e-19
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 55/301 (18%)

Query: 20  KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AWLA 66
           K+L  ++L       + ++GP+G+GKST+++++A      +GE              WL 
Sbjct: 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426

Query: 67  TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
           +   +G + QEP L  + T++ENI  G         + +         T EEI +     
Sbjct: 427 S--QIGLVSQEPVL-FATTIRENIRYG---------KPDA--------TREEIEEAAKAA 466

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
                 D   ++    ++L           LSGG+K+R+A+ + L+ +P +LLLDE T+ 
Sbjct: 467 ---NAHDFILKLPDGYDTLVGERG----VQLSGGQKQRIAIARALVRNPKILLLDEATSA 519

Query: 187 LDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGN------- 237
           LDAE+   +++ L + S     ++V H    + N  + I  ++ GK I  QG        
Sbjct: 520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNA-DKIAVMEEGK-IVEQGTHDELIAL 577

Query: 238 ---YSAYLQMKAKRMAQENR-EEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVE 293
              YS+ ++++    A E+  EE S ++   R      SSP   +  +++ + S +   E
Sbjct: 578 GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGE 637

Query: 294 S 294
            
Sbjct: 638 D 638



 Score = 83.7 bits (207), Expect = 1e-16
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%)

Query: 318 IEAKGISKSYNDR---LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
           IE + +  SY  R    ++  +S K+P G  V ++GP+G+GK+TL ++L     P SG +
Sbjct: 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV 410

Query: 375 HV----GETVCLSYVDQSRDSLEAEK-----TVWEDIS-GGDDIVKLNGHEINSRAYCSA 424
            +       + L ++      +  E      T+ E+I  G  D  +    E    A    
Sbjct: 411 LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHD 470

Query: 425 F--NFKGGDQQQ---RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
           F      G       R   LSGGQ+ R+ +A+ L     ++LLDE T+ LD E+   +++
Sbjct: 471 FILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQE 530

Query: 480 ALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           AL+  +     ++++H R+   R A  I   E  G +   +G  +E
Sbjct: 531 ALDKASKGRTTIVVAH-RLSTIRNADKIAVME-EGKIVE-QGTHDE 573



 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 31/230 (13%)

Query: 318  IEAKGISKSY---NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
            IE + +S +Y    D  +++NLS  +  G  V ++GP+G+GK+T+  +L     PD+G +
Sbjct: 988  IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047

Query: 375  HV-GETV----------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA-YC 422
             + G  +           +  V Q         T+ E+I+ G + V     EI   A   
Sbjct: 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG--TIRENIAYGSEEVSEE--EIIEAAKLA 1103

Query: 423  SAFNFKGGDQQ-------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
            +A NF     Q       +R   LSGGQ+ R+ +A+ +     ++LLDE T+ LD+E+  
Sbjct: 1104 NAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163

Query: 476  ALEDALENFA-GCA-VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
             +++AL+    G   ++I+H R+   + A  I   +    VE  +G  +E
Sbjct: 1164 VVQEALDRAMEGRTTIVIAH-RLSTIQNADVIAVLKNGKVVE--QGTHDE 1210



 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 58/193 (30%)

Query: 20   KVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AG---ID----KEYNGEAWL 65
             VL++++LS      + ++GP+G+GKST++ ++       AG   ID    K+ N   WL
Sbjct: 1004 PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWL 1062

Query: 66   ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI---AKL 122
                 +G + QEP L  + T++ENI  G                   E +EEEI   AKL
Sbjct: 1063 RK--QIGLVSQEPVL-FNGTIRENIAYGS-----------------EEVSEEEIIEAAKL 1102

Query: 123  QDI---IDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
             +    I S  +G    +T V            G     LSGG+K+R+A+ + +L +P +
Sbjct: 1103 ANAHNFISSLPQGY---DTRV------------GERGVQLSGGQKQRIAIARAILRNPKI 1147

Query: 178  LLLDEPTNHLDAE 190
            LLLDE T+ LD+E
Sbjct: 1148 LLLDEATSALDSE 1160


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score = 90.7 bits (225), Expect = 8e-19
 Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 48/230 (20%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM------------AGID-KEYNGEAW 64
            +KVL  ++ +     K+ I+G NG+GKSTILR++             G D KE + E+ 
Sbjct: 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES- 422

Query: 65  LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE--EIAKL 122
                ++G +PQ+  L  + T+  NI  G                N S   EE  E  K 
Sbjct: 423 --LRQSIGVVPQDSVL-FNDTILYNIKYG----------------NPSASDEEVVEACKR 463

Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
             + D         +  V    L           LSGGEK+RV+L +  L    +LLLDE
Sbjct: 464 AGLHDVISRLPDGYQTLVGERGLM----------LSGGEKQRVSLARAFLKDAPILLLDE 513

Query: 183 PTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230
            T+ LD+ET   +   + +      V+M+ H    L +    I+ +D G 
Sbjct: 514 ATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDK-IIVLDNGT 562



 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 40/233 (17%)

Query: 318 IEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE   +  SY   R ++  +SF +P G  V ++G NG+GK+T+ R+L       SG+I +
Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410

Query: 377 G---------ETV--CLSYVDQSRDSLEAEKTVWEDI-----SGGDDIV-----KLNGHE 415
                     E++   +  V Q  DS+    T+  +I     S  D+ V     +   H+
Sbjct: 411 DGQDIKEVSLESLRQSIGVVPQ--DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHD 468

Query: 416 INSRAYCSAFNFKGGDQQ---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
           + SR          G Q    +R   LSGG++ RV LA+       ++LLDE T+ LD+E
Sbjct: 469 VISR-------LPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521

Query: 473 TLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           T   + D + +       ++I H    L      I+  +     E   G   E
Sbjct: 522 TEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKE--YGTHSE 571


>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
           the carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           Pentoses include xylose, arabinose, and ribose.
           Important hexoses include glucose, galactose, and
           fructose.  In members of the Carb_monos family, the
           single hydrophobic gene product forms a homodimer while
           the ABC protein represents a fusion of two
           nucleotide-binding domains.  However, it is assumed that
           two copies of the ABC domains are present in the
           assembled transporter..
          Length = 163

 Score = 90.5 bits (225), Expect = 1e-18
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 48/182 (26%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E +GI+K +     +D +S  +  G +  ++G NGAGK+TL ++L+G   PDSG I V 
Sbjct: 1   LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV- 59

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437
                                             +G E++  +   A       ++  I 
Sbjct: 60  ----------------------------------DGKEVSFASPRDA-------RRAGIA 78

Query: 438 S---LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-I 491
               LS G+R  V +A+ L     +++LDEPT  L    +  L   +      G AVI I
Sbjct: 79  MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFI 138

Query: 492 SH 493
           SH
Sbjct: 139 SH 140



 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 9  MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66
          + G++K FG  K LD ++LS        +LG NGAGKST+++I++G+ K  +GE  + 
Sbjct: 3  LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60



 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVT 210
           +  LS GE++ V + + L  +  LL+LDEPT  L    +  + K +R       AV+ ++
Sbjct: 80  VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFIS 139

Query: 211 H 211
           H
Sbjct: 140 H 140


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score = 89.7 bits (222), Expect = 2e-18
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 35/213 (16%)

Query: 13  SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE---------YNGEA 63
            K   +K +L  ++ +  P   + I+GP+G+GK+T+L  +AG              NG  
Sbjct: 37  EKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP 96

Query: 64  WLATGF--TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
             +  F    GY+ Q+  L  + TV+E +        A       L +  S   EE+  +
Sbjct: 97  RDSRSFRKISGYVQQDDVLLPTLTVRETL-----RFSA------LLRLPSSLSKEEKRER 145

Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
           ++++I   GL                      I  LSGGE++RV++   LL+ P +L LD
Sbjct: 146 VEEVISELGLEKCA----------DTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD 195

Query: 182 EPTNHLDAETIAWMEKYLREYSGA---VLMVTH 211
           EPT+ LD+ +   + + L+  + +   V+   H
Sbjct: 196 EPTSGLDSFSALQVVQLLKRLARSGRTVICTIH 228



 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 27/209 (12%)

Query: 308 PVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-- 365
               +L    +      KS   + ++  +S    PG ++ ++GP+G+GKTTL   L G  
Sbjct: 21  LEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRL 80

Query: 366 -DESPDSGTIHVGETV--------CLSYVDQSRDSLEAEKTVWEDISGGDDI---VKLNG 413
                 SG I +               YV Q  D L    TV E +     +     L+ 
Sbjct: 81  NGGLKLSGEILLNGRPRDSRSFRKISGYVQQD-DVLLPTLTVRETLRFSALLRLPSSLSK 139

Query: 414 HEINSRAYC--------SAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465
            E   R              +   G+   R   LSGG+R RV +A  L +  +++ LDEP
Sbjct: 140 EEKRERVEEVISELGLEKCADTLIGNPGIR--GLSGGERKRVSIALELLTDPSILFLDEP 197

Query: 466 TNDLDTETLSALEDALENFA--GCAVIIS 492
           T+ LD+ +   +   L+  A  G  VI +
Sbjct: 198 TSGLDSFSALQVVQLLKRLARSGRTVICT 226


>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
           bacterial exporter complex that confers resistance to
           the antibiotics daunorubicin and doxorubicin.  In
           addition to DrrA, the complex includes an integral
           membrane protein called DrrB.  DrrA belongs to the ABC
           family of transporters and shares sequence and
           functional similarities with a protein found in cancer
           cells called  P-glycoprotein.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region in
           addition to the Walker A motif/P-loop and Walker B motif
           commonly found in a number of ATP- and GTP-binding and
           hydrolyzing proteins..
          Length = 220

 Score = 89.9 bits (223), Expect = 2e-18
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 45/235 (19%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF- 69
            L K +G  + +  ++         G+LGPNGAGK+T ++++  + K  +G A +A G  
Sbjct: 5   NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA-GHD 63

Query: 70  ----------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
                      +G + Q+  +D   T  EN+         I  R       Y     E  
Sbjct: 64  VVREPREVRRRIGIVFQDLSVDDELTGWENL--------YIHARL------YGVPGAERR 109

Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
            ++ +++D  GL +               AD L + + SGG +RR+ + + L+  P++L 
Sbjct: 110 ERIDELLDFVGLLEA--------------ADRL-VKTYSGGMRRRLEIARSLVHRPEVLF 154

Query: 180 LDEPTNHLDAETIA--W--MEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           LDEPT  LD +T A  W  +EK   E+   +L+ TH     + + + +  +D G+
Sbjct: 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209



 Score = 88.8 bits (220), Expect = 3e-18
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 16/203 (7%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           IE + + K Y D   +  +SF++  G I G++GPNGAGKTT  +MLT    P SG   V 
Sbjct: 1   IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60

Query: 378 --ETVC--------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF 427
             + V         +  V Q   S++ E T WE++     +  + G E   R        
Sbjct: 61  GHDVVREPREVRRRIGIVFQDL-SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV 119

Query: 428 KGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL----EDALE 482
              +   R + + SGG R R+ +A+ L     V+ LDEPT  LD +T + +    E   E
Sbjct: 120 GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179

Query: 483 NFAGCAVIISHDRMFLDRLATHI 505
            F    ++ +H     ++L   +
Sbjct: 180 EFGMTILLTTHYMEEAEQLCDRV 202


>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 325

 Score = 89.6 bits (222), Expect = 2e-18
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL----SYVDQS 388
           + ++SF++P G IVG +G NGAGK+T  +MLTG   P SG + V           Y+   
Sbjct: 40  VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSI 99

Query: 389 RDSLEAEKTVWEDISGGDDIVKLNGH--EINSRAYCSAFNFK------GGDQQQRIGSLS 440
              +  +  +W D+   D +  +     EI    +    +F        G  +  +  LS
Sbjct: 100 GLVMGQKLQLWWDLPALDSLE-VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLS 158

Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA---GCAVII-SHDRM 496
            GQR R  LA  L     V+ LDEPT  LD    + + + L+ +       V++ +H   
Sbjct: 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218

Query: 497 FLDRLATHIL 506
            +  L   +L
Sbjct: 219 DIATLCDRVL 228



 Score = 74.9 bits (184), Expect = 5e-14
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 45/255 (17%)

Query: 24  DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83
           DI+        +G LG NGAGKST L+++ G+    +G+  +      G  P   + +  
Sbjct: 42  DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN-----GKDPFRRREEYL 96

Query: 84  KTVKENIIEGVAHK----QAILDRYNELMMNYS---EKTEEEIAKLQDIIDSKGLWDLET 136
           +++   ++ G   +       LD    L + Y    ++  E +  L +I+D      LE 
Sbjct: 97  RSI--GLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILD------LEG 148

Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196
            ++  +  L            S G++ R  L   LL  P +L LDEPT  LD    A + 
Sbjct: 149 FLKWPVRKL------------SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196

Query: 197 KYLREYS----GAVLMVTHDRYFLDNVTNW---ILEVDRGKGIPYQGNYSAYLQMKAKRM 249
           ++L+EY+      VL+ TH     D++      +L +D+G+ + + G  +   +      
Sbjct: 197 EFLKEYNEERQATVLLTTHI---FDDIATLCDRVLLIDQGQ-LVFDGTLAQLQEQFGP-- 250

Query: 250 AQENREEISRQKAIE 264
            +E   E+ + K++ 
Sbjct: 251 YKEFSVELKQAKSLS 265


>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
           [Energy production and conversion / Inorganic ion
           transport and metabolism].
          Length = 245

 Score = 89.6 bits (222), Expect = 2e-18
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 317 VIEAKGISKSYNDRLL-IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           ++E   ++KSY  ++  + ++SF+   G I G++G NGAGKTTL RM+     PDSG + 
Sbjct: 1   MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60

Query: 376 VGETVCLSYVDQSRD---------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426
           +     +      R           L A  T  E++     +  L+  EI +R    +  
Sbjct: 61  IDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKR 120

Query: 427 FKGGD-QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED---ALE 482
            +  +   +R+G  S G + +V +A+ L    ++++LDEPT+ LD  T     D    L+
Sbjct: 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180

Query: 483 NFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           N     +  SH    ++ L   ++     G V   EG+ E 
Sbjct: 181 NEGRAVIFSSHIMQEVEALCDRVIVLH-KGEV-VLEGSIEA 219



 Score = 68.4 bits (167), Expect = 5e-12
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 56/265 (21%)

Query: 11  GLSKVFGSK-KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69
            L+K +GSK + + D++         G+LG NGAGK+T+LR++A +    +G+     G 
Sbjct: 6   DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGV 64

Query: 70  T-----------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
                       +G L  E  L    T +EN+            R N L     +    E
Sbjct: 65  DTVRDPSFVRRKIGVLFGERGLYARLTARENL--------KYFARLNGLSRKEIKARIAE 116

Query: 119 IAK---LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
           ++K   L + +D +                        +   S G K++VA+ + L+  P
Sbjct: 117 LSKRLQLLEYLDRR------------------------VGEFSTGMKQKVAIARALVHDP 152

Query: 176 DLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232
            +L+LDEPT+ LD  T      +   L+    AV+  +H    ++ + + ++ + +G+ +
Sbjct: 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212

Query: 233 PYQGNYSAYLQMKAKRMAQENREEI 257
                    ++    R    N EEI
Sbjct: 213 -----LEGSIEALDARTVLRNLEEI 232


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 223

 Score = 88.7 bits (220), Expect = 3e-18
 Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 22/213 (10%)

Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           +I  + +SK+Y   R  + ++SF +P G  V + GP+GAGK+TL +++ G+E P  G I 
Sbjct: 1   MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60

Query: 376 V-GETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY 421
           V G  +              +  V Q    L  ++TV+E+++    ++     EI  R  
Sbjct: 61  VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP-DRTVYENVALPLRVIGKPPREIRRRV- 118

Query: 422 CSAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
               +  G   + + + S LSGG++ RV +A+ + +   V+L DEPT +LD +    +  
Sbjct: 119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR 178

Query: 480 ALE--NFAGCAVII-SHDRMFLDRLATHILAFE 509
             E  N  G  V++ +HD   ++R+   +LA E
Sbjct: 179 LFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211



 Score = 83.3 bits (206), Expect = 2e-16
 Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 51/243 (20%)

Query: 8   HMAGLSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66
               +SK + G ++ L D++        + + GP+GAGKST+L+++ G ++   G+  + 
Sbjct: 3   RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN 62

Query: 67  TGFTVGYLP---------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111
            G  +  L                Q+ +L   +TV EN+                L +  
Sbjct: 63  -GHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA---------------LPLRV 106

Query: 112 SEKTEEEIAK-LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
             K   EI + + +++D  GL           ++   P+       LSGGE++RVA+ + 
Sbjct: 107 IGKPPREIRRRVSEVLDLVGLKH---------KARALPSQ------LSGGEQQRVAIARA 151

Query: 171 LLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEVD 227
           +++ P +LL DEPT +LD +    + +   E +     VLM THD   ++ + + +L ++
Sbjct: 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211

Query: 228 RGK 230
            G+
Sbjct: 212 DGR 214


>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
           transporter, MalK.  ATP binding cassette (ABC) proteins
           function from bacteria to human, mediating the
           translocation of substances into and out of cells or
           organelles.  ABC transporters contain two
           transmembrane-spanning domains (TMDs) or subunits and
           two nucleotide binding domains (NBDs) or subunits that
           couple transport to the hydrolysis of ATP.  In the
           maltose transport system, the periplasmic maltose
           binding protein (MBP) stimulates the ATPase activity of
           the membrane-associated transporter, which consists of
           two transmembrane subunits, MalF and MalG, and two
           copies of the ATP binding subunit, MalK, and becomes
           tightly bound to the transporter in the catalytic
           transition state, ensuring that maltose is passed to the
           transporter as ATP is hydrolyzed..
          Length = 213

 Score = 88.3 bits (219), Expect = 5e-18
 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 13/201 (6%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E + ++K + +   +D+L+  +  G  V ++GP+G GKTT  RM+ G E P SG I++G
Sbjct: 1   VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60

Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
                    + RD        +L    TV+++I+ G  + K+   EI+ R    A   + 
Sbjct: 61  GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI 120

Query: 430 GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENF 484
                R    LSGGQR RV L + +     V L+DEP ++LD     +  + L+   +  
Sbjct: 121 EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180

Query: 485 AGCAVIISHDRMFLDRLATHI 505
               + ++HD++    +A  I
Sbjct: 181 GTTTIYVTHDQVEAMTMADRI 201



 Score = 83.3 bits (206), Expect = 2e-16
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 48/220 (21%)

Query: 9   MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68
           +  ++K FG+   LDD+NL       + +LGP+G GK+T LR++AG+++  +G  ++  G
Sbjct: 3   LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG-G 61

Query: 69  FTVGYLP----------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
             V  LP          Q   L    TV +NI  G+  K   + +               
Sbjct: 62  RDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGL--KLRKVPK--------------- 104

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
                D ID +     E    + IE L    P        LSGG+++RVAL + ++  P 
Sbjct: 105 -----DEIDERVREVAEL---LQIEHLLDRKPKQ------LSGGQRQRVALGRAIVREPK 150

Query: 177 LLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212
           + L+DEP ++LDA    +  A +++  +      + VTHD
Sbjct: 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190


>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminas, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resisting lung cancer cell in
           which p-glycoprotein was not overexpressed. MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 204

 Score = 88.2 bits (219), Expect = 6e-18
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 33/222 (14%)

Query: 13  SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG 72
           S    +   L DINL       + I+GP G+GKS++L  + G  ++ +G   +    ++ 
Sbjct: 12  SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIA 69

Query: 73  YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
           Y+ QEP +  + T++ENI+ G    +   +RY +++   + + + EI    D        
Sbjct: 70  YVSQEPWI-QNGTIRENILFGKPFDE---ERYEKVIKACALEPDLEILPDGD-------- 117

Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192
              TE+            G    +LSGG+K+R++L + + S  D+ LLD+P + +DA   
Sbjct: 118 --LTEI------------GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163

Query: 193 AW-MEKYLREY---SGAVLMVTHDRYFLDNVTNWILEVDRGK 230
               E  +      +   ++VTH    L +  + I+ +D G+
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQLQLLPHA-DQIVVLDNGR 204



 Score = 78.6 bits (194), Expect = 4e-15
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 27/164 (16%)

Query: 324 SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS 383
           S        + +++ ++P G +V ++GP G+GK++L   L G+    SG++ V  ++  +
Sbjct: 12  SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI--A 69

Query: 384 YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF----------NFKGGDQQ 433
           YV Q         T+ E+I        L G   +   Y                  GD  
Sbjct: 70  YVSQEPWIQNG--TIRENI--------LFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119

Query: 434 QRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
           + IG    +LSGGQ+ R+ LA+ + S  ++ LLD+P + +D   
Sbjct: 120 E-IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
           nucleotide-binding protein that binds FtsX to form a
           heterodimeric ATP-binding cassette (ABC)-type
           transporter that associates with the bacterial inner
           membrane.  The FtsE/X transporter is thought to be
           involved in cell division and is important for assembly
           or stability of the septal ring..
          Length = 214

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 20/211 (9%)

Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE   ++K+Y N    +D ++  +  G  V ++GP+GAGK+TL +++  +E P SGTI V
Sbjct: 1   IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60

Query: 377 -GETVC------LSYVDQS-----RDS-LEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
            G+ V       + Y+ +      +D  L  ++ V+E+++   ++  +   EI  R   +
Sbjct: 61  NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV-PA 119

Query: 424 AFNFKGGDQQQRI--GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
           A    G   + R     LSGG++ RV +A+ + +   +++ DEPT +LD +T   + + L
Sbjct: 120 ALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179

Query: 482 E--NFAGCAVIIS-HDRMFLDRLATHILAFE 509
           +  N AG  V+++ H +  +D     ++A E
Sbjct: 180 KKINKAGTTVVVATHAKELVDTTRHRVIALE 210



 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 50/230 (21%)

Query: 20  KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP---- 75
             LD IN+S      + ++GP+GAGKST+L+++   +   +G      G  V  L     
Sbjct: 15  AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRAI 73

Query: 76  -----------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK-LQ 123
                      Q+ +L   + V EN+                  +  +     EI K + 
Sbjct: 74  PYLRRKIGVVFQDFRLLPDRNVYENVA---------------FALEVTGVPPREIRKRVP 118

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
             ++  GL      +         PA+      LSGGE++RVA+ + +++SP +L+ DEP
Sbjct: 119 AALELVGLSHKHRAL---------PAE------LSGGEQQRVAIARAIVNSPTILIADEP 163

Query: 184 TNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGK 230
           T +LD +T   +   L++ + A   V++ TH +  +D   + ++ ++RGK
Sbjct: 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213


>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 300

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E +G++KS+ D+  +DN+SF++PPG I G++GPNGAGKTT FRM+ G   P  G I   
Sbjct: 3   LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNG------HEINSR--AYCSAFNFKG 429
                  +      L  E+ ++  ++  D +  L         EI  +  A+        
Sbjct: 63  GGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI-V 121

Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GC 487
           G + ++I  LS G + ++     +     +++LDEP + LD   +  L+DA+      G 
Sbjct: 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181

Query: 488 AVIISHDRM-FLDRLATHIL 506
            +I S  RM  ++ L   +L
Sbjct: 182 TIIFSSHRMEHVEELCDRLL 201



 Score = 84.9 bits (210), Expect = 6e-17
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 39/234 (16%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGF 69
           G++K FG KK +D+I+    P    G+LGPNGAGK+T  R++ G+ +   GE  W     
Sbjct: 7   GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL 66

Query: 70  T------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
           +      +GYLP+E  L    TV++ +            +Y   +        E   KLQ
Sbjct: 67  SQEIKNRIGYLPEERGLYPKMTVEDQL------------KYLAELKGM--PKAEIQKKLQ 112

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
             ++   +   +T+                I  LS G ++++     ++  P+LL+LDEP
Sbjct: 113 AWLERLEIVGKKTK---------------KIKELSKGNQQKIQFISAVIHEPELLILDEP 157

Query: 184 TNHLD---AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
            + LD    E +      L+E    ++  +H    ++ + + +L + +G+ + Y
Sbjct: 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY 211


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 43/211 (20%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----------- 65
             K +L  I+ +      +GI+GP+G+GKST+ R++ GI    +G   L           
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENI--IEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
             G  +GYLPQ+ +L    T+ ENI      A  + ++                E A+L 
Sbjct: 407 QLGRHIGYLPQDVEL-FDGTIAENIARFGEEADPEKVI----------------EAARLA 449

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
            + +         + ++          G     LSGG+++R+AL + L   P L++LDEP
Sbjct: 450 GVHELILRLPQGYDTRIG-------EGGAT---LSGGQRQRIALARALYGDPFLVVLDEP 499

Query: 184 TNHLDAETIAWME---KYLREYSGAVLMVTH 211
            ++LD+E  A +       +   G V+++ H
Sbjct: 500 NSNLDSEGEAALAAAILAAKARGGTVVVIAH 530



 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 62/265 (23%)

Query: 262 AIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAK 321
           AI   + ++     ARQS    R+      + +AA R        +P+    G + +E  
Sbjct: 295 AIANWKQFV----AARQSY--KRLNELLAELPAAAER--------MPLPAPQGALSVERL 340

Query: 322 GISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI------- 374
             +     + ++  +SF L  G  +G+IGP+G+GK+TL R+L G   P SG++       
Sbjct: 341 TAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400

Query: 375 ----------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
                     H+G      Y+ Q  +  +   T+ E+I+   +       E +      A
Sbjct: 401 RQWDREQLGRHIG------YLPQDVELFDG--TIAENIARFGE-------EADPEKVIEA 445

Query: 425 FNFKGGDQ---------QQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
               G  +           RIG    +LSGGQR R+ LA+ L     +++LDEP ++LD+
Sbjct: 446 ARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505

Query: 472 ETLSALEDAL---ENFAGCAVIISH 493
           E  +AL  A+   +   G  V+I+H
Sbjct: 506 EGEAALAAAILAAKARGGTVVVIAH 530


>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
           component/photorepair protein PhrA [Inorganic ion
           transport and metabolism].
          Length = 257

 Score = 86.5 bits (214), Expect = 2e-17
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 44/247 (17%)

Query: 9   MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65
           +  +S     KK+L D++    P     I+GPNGAGK+T+L ++ G     +G+  L   
Sbjct: 34  LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93

Query: 66  -----ATGF----TVGYLPQEPQLDLSK--TVKENIIEGVAHKQAILDRYNELMMNYSEK 114
                 T F     +G +  E         TV++ ++ G          +  + +   + 
Sbjct: 94  RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF---------FASIGIYQEDL 144

Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
           T E++A  Q +++  G   L                     SLS GE+RRV + + L+  
Sbjct: 145 TAEDLAAAQWLLELLGAKHLADR---------------PFGSLSQGEQRRVLIARALVKD 189

Query: 175 PDLLLLDEPTNHLDAETIAWMEKYLRE-----YSGAVLMVTHDRYFLDNVTNWILEVDRG 229
           P+LL+LDEP   LD      +   L E      + A+L VTH    +       L +  G
Sbjct: 190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249

Query: 230 KGIPYQG 236
           + +  QG
Sbjct: 250 EVV-AQG 255



 Score = 78.0 bits (192), Expect = 6e-15
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 24/215 (11%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           IE K +S   N + ++ +LS+++ PG    ++GPNGAGKTTL  +LTG+  P SG + + 
Sbjct: 32  IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLL 91

Query: 377 ------GETV-----CLSYVDQSRDSLEAEKTVWEDI--SGGDDIVKLNGHEI--NSRAY 421
                 GET+      +  V          +    D+  SG    + +   ++     A 
Sbjct: 92  GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA 151

Query: 422 CSAFNFKGGDQ---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478
                   G +    +  GSLS G++ RV +A+ L     +++LDEP   LD      L 
Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211

Query: 479 DALENFAGCA-----VIISHDRMFLDRLATHILAF 508
           + LE  A        + ++H    +    TH L  
Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246


>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
           proteins, ABC superfamily [Lipid transport and
           metabolism, General function prediction only].
          Length = 885

 Score = 85.1 bits (210), Expect = 4e-17
 Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 21/250 (8%)

Query: 263 IERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKG 322
           +     +        Q+  K       E ++ A  R     ++   + +      +    
Sbjct: 514 LLIFVPFKRRMRALTQNMLKGFEPVEVEKLDVARER----NRVETLLFRSSYSSALVLNN 569

Query: 323 ISKSYNDRLL-IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETV 380
           +SK Y  +   +  LSF +PPG   G++G NGAGKTT F+MLTG+  P SG   + G  +
Sbjct: 570 LSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDI 629

Query: 381 CLSY-VDQSRDSL---EAEKTVWEDISGGDDIV------KLNGHEINSRA--YCSAFNFK 428
            +S    Q R  L        +WE+++G + +        L   +I S            
Sbjct: 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGL- 688

Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--G 486
           G    +++ + SGG + R+  A  L    +VILLDEP+  LD +    L D +      G
Sbjct: 689 GPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748

Query: 487 CAVIISHDRM 496
            A+I++   M
Sbjct: 749 KAIILTSHSM 758



 Score = 81.2 bits (200), Expect = 6e-16
 Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 45/217 (20%)

Query: 11  GLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA--- 66
            LSKV+G K   +  ++ +  P    G+LG NGAGK+T  +++ G  K  +GEA +    
Sbjct: 569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHD 628

Query: 67  -TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
            T  T        +GY PQ   L    T +E+           L+ Y  L          
Sbjct: 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREH-----------LEFYARLRGLPRSDIGS 677

Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
            I KL  ++      + +                  + + SGG KRR++    L+  P +
Sbjct: 678 AIEKLLRLVGLGPYANKQ------------------VRTYSGGNKRRLSFAIALIGDPSV 719

Query: 178 LLLDEPTNHLD--AETIAW-MEKYLREYSGAVLMVTH 211
           +LLDEP+  LD  A    W +   LR+   A+++ +H
Sbjct: 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH 756


>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
           permease components [Defense mechanisms].
          Length = 567

 Score = 83.6 bits (206), Expect = 1e-16
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 25/226 (11%)

Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE + +S SY   + ++ ++SF + PG  V ++GP+G+GK+TL ++L     P SG I +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388

Query: 377 GET-----------VCLSYVDQSRDSLEAEKTVWEDIS-GGDDIVKLNGHEINSRAYCSA 424
                           +  V Q  D L    T+ E+I+ G  D       E    A    
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQ--DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHE 446

Query: 425 FNFKGGDQ-----QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
           F     D       +R  +LSGGQR R+ +A+ L     +++LDE T+ LDTET + ++D
Sbjct: 447 FIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506

Query: 480 ALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           AL+        +II+H R+   + A  I+  +    VE   G  EE
Sbjct: 507 ALKKLLKGRTTLIIAH-RLSTIKNADRIIVLDNGRIVE--RGTHEE 549



 Score = 77.8 bits (191), Expect = 6e-15
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 58/249 (23%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG----------ID----KEYNGE 62
           G K VL DI+ S  P  K+ I+GP+G+GKST+++++            ID    ++ + +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399

Query: 63  AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI--- 119
           +       +G + Q+P L  S T++ENI  G                   + T+EEI   
Sbjct: 400 SLRKR---IGIVSQDPLL-FSGTIRENIALGRP-----------------DATDEEIEEA 438

Query: 120 ---AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
              A   + I +      +T V            G    +LSGG+++R+A+ + LL +P 
Sbjct: 439 LKLANAHEFIANLPD-GYDTIV------------GERGVNLSGGQRQRLAIARALLRNPP 485

Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
           +L+LDE T+ LD ET A ++  L++       L++ H    + N  + I+ +D G+ I  
Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA-DRIIVLDNGR-IVE 543

Query: 235 QGNYSAYLQ 243
           +G +   L 
Sbjct: 544 RGTHEELLA 552


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
           [Amino acid transport and metabolism].
          Length = 242

 Score = 83.2 bits (205), Expect = 2e-16
 Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 23/248 (9%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
           G++  +G+ + L DI L       + +LGP+GAGKS++LR++  ++   +G   +A    
Sbjct: 7   GINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN-- 64

Query: 71  VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM--MNYSEKTEEEIAKLQDIIDS 128
                     D SKT  +  I  +     ++ +   L   +   E   E   ++  +   
Sbjct: 65  --------HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD 116

Query: 129 KGLWDLETEVQVAIESLHCP--ADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
           + L       +  ++ L     AD   +  LSGG+++RVA+ + L+  P +LL DEPT  
Sbjct: 117 QAL----ARAEKLLKRLRLKPYADRYPL-HLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171

Query: 187 LDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243
           LD E  A +   ++E +      ++VTH+        + ++ ++ G  I  QG+ S + +
Sbjct: 172 LDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGH-IVEQGDASCFTE 230

Query: 244 MKAKRMAQ 251
            + +    
Sbjct: 231 PQTEAFKN 238



 Score = 80.5 bits (198), Expect = 1e-15
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 22/218 (10%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           I+  GI+  Y     + +++   P G  + ++GP+GAGK++L R+L   E P SGT+++ 
Sbjct: 3   IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62

Query: 377 GETVCLSYVDQSRDSLEAEKTV---------WEDISGGDDIV-------KLNGHEINSRA 420
           G     S     +   +  + V         W  ++  ++++        L+  +  +RA
Sbjct: 63  GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122

Query: 421 YCSAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
                  +      R    LSGGQ+ RV +A+ L     V+L DEPT  LD E  + +  
Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182

Query: 480 ALENFAGCA---VIISHDRMFLDRLATHILAFEGNGHV 514
            ++  A      VI++H+     + A+ ++  E NGH+
Sbjct: 183 IIKELAETGITQVIVTHEVEVARKTASRVVYME-NGHI 219


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
           component of the protease secretion system PrtD, a
           60-kDa integral membrane protein sharing 37% identity
           with HlyB, the ABC component of the alpha-hemolysin
           secretion pathway, in the C-terminal domain.  They
           export degradative enzymes by using a type I protein
           secretion system and  lack an N-terminal signal peptide,
           but contain a C-terminal secretion signal.  The Type I
           secretion apparatus is made up of three components, an
           ABC transporter, a membrane fusion protein (MFP), and an
           outer membrane protein (OMP).  For the HlyA transporter
           complex, HlyB (ABC transporter) and HlyD (MFP) reside in
           the inner membrane of E. coli.  The OMP component is
           TolC, which is thought to interact with the MFP to form
           a continuous channel across the periplasm from the
           cytoplasm to the exterior.  HlyB belongs to the family
           of ABC transporters, which are ubiquitous, ATP-dependent
           transmembrane pumps or channels.  The spectrum of
           transport substrates ranges from inorganic ions,
           nutrients such as amino acids, sugars, or peptides,
           hydrophobic drugs, to large polypeptides, such as HlyA..
          Length = 173

 Score = 82.9 bits (205), Expect = 2e-16
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 35/199 (17%)

Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           +E + +S  Y   +  ++ N+SF + PG  + +IGP+G+GK+TL R++ G   P SG + 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 376 V-GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQ 434
           + G  +     ++  D +     + +D                            G   +
Sbjct: 61  LDGADISQWDPNELGDHV---GYLPQDD-----------------------ELFSGSIAE 94

Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGCAVII 491
            I  LSGGQR R+ LA+ L     +++LDEP + LD E   AL  A+          ++I
Sbjct: 95  NI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152

Query: 492 SHDRMFLDRLATHILAFEG 510
           +H R      A  IL  E 
Sbjct: 153 AH-RPETLASADRILVLED 170



 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-----------AWL 65
               VL +++ S  P   + I+GP+G+GKST+ R++ G+ +  +G               
Sbjct: 13  AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPN 72

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL 101
             G  VGYLPQ+ +L  S ++ ENI+ G   +Q + 
Sbjct: 73  ELGDHVGYLPQDDEL-FSGSIAENILSG-GQRQRLG 106



 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 153 NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME---KYLREYSGAVLMV 209
           NI  LSGG+++R+ L + L  +P +L+LDEP +HLD E    +      L+      +++
Sbjct: 95  NI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152

Query: 210 TH 211
            H
Sbjct: 153 AH 154


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 31/217 (14%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
             + +L ++N    P  ++ I G +GAGK+++LR +AG+    +G   +     + +LPQ
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463

Query: 77  EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136
            P L    T++E +    A           ++       +  +  L + +D +  WD   
Sbjct: 464 RPYLPQG-TLREALCYPNAAPDFSDAELVAVL------HKVGLGDLAERLDEEDRWDRV- 515

Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196
                               LSGGE++R+A  +LLL  P  + LDE T+ LD ET   + 
Sbjct: 516 --------------------LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY 555

Query: 197 KYLRE--YSGAVLMVTHDRYFLDNVTNWILEVDRGKG 231
           + L+E      V+ V H R  L N  +  LE+    G
Sbjct: 556 QLLKEELPDATVISVGH-RPTLWNFHSRQLELLDDAG 591



 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 14/191 (7%)

Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ-- 387
           + L+  L+F++ PG  + + G +GAGKT+L R L G     SG I +     L ++ Q  
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465

Query: 388 --SRDSLEAEKTVWEDISG--GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQ 443
              + +L  E   + + +    D  +    H++         +    D+  R+  LSGG+
Sbjct: 466 YLPQGTL-REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD--EEDRWDRV--LSGGE 520

Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCAVI-ISHDRMFLDRL 501
           + R+  A++L      + LDE T+ LD ET   L   L E      VI + H R  L   
Sbjct: 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH-RPTLWNF 579

Query: 502 ATHILAFEGNG 512
            +  L    + 
Sbjct: 580 HSRQLELLDDA 590


>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
           biogenesis, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 209

 Score = 82.6 bits (204), Expect = 3e-16
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 16/195 (8%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           +EA+ +S    +R L  +LSF L  G  + + GPNGAGKTTL R+L G   PD+G ++  
Sbjct: 3   LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62

Query: 377 --GETVCLSYVDQS------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK 428
                       Q+      +  ++ E T  E++         +G    +  + +     
Sbjct: 63  GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF---HGSGNAATIWEALAQVG 119

Query: 429 -GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485
             G +   +G LS GQ+ RV LA++  S   + +LDEP   LD E ++ L   +   A  
Sbjct: 120 LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179

Query: 486 -GCAVIISHDRMFLD 499
            G  ++ +H  + + 
Sbjct: 180 GGIVLLTTHQPLPIA 194



 Score = 75.3 bits (185), Expect = 4e-14
 Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 45/219 (20%)

Query: 7   YHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWL 65
                LS   G + +  D++ +      + I GPNGAGK+T+LRI+AG+ +   GE  W 
Sbjct: 3   LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62

Query: 66  ATGFTVG---------YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTE 116
                           YL  +P +    T  EN+             + +          
Sbjct: 63  GEPIQNVRESYHQALLYLGHQPGIKTELTALENL------------HFWQRFHGSGNA-- 108

Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
              A + + +   GL  LE            P        LS G++RRVAL +L LS   
Sbjct: 109 ---ATIWEALAQVGLAGLE----------DLPV-----GQLSAGQQRRVALARLWLSPAP 150

Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHD 212
           L +LDEP   LD E +A +   +  ++   G VL+ TH 
Sbjct: 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI's are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity of more than 48%.  The high degree of
           evolutionary conservation suggests that RLI performs a
           central role in archaeal and eukaryotic physiology..
          Length = 246

 Score = 82.6 bits (204), Expect = 3e-16
 Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 43/219 (19%)

Query: 18  SKKVLDDINL-----SFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG 72
            KK L +  L     S      IGILGPNG GK+T ++++AG+ K   G+       TV 
Sbjct: 6   MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVS 64

Query: 73  YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
           Y PQ  + D   TV++ ++  +         +   +            +++ I+D     
Sbjct: 65  YKPQYIKADYEGTVRD-LLSSITKDFYTHPYFKTEIAK--------PLQIEQILDR---- 111

Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192
                                +  LSGGE +RVA+   L    D+ LLDEP+ +LD E  
Sbjct: 112 --------------------EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151

Query: 193 AWMEKYLREY----SGAVLMVTHDRYFLDNVTNWILEVD 227
               K +R +         +V HD   +D + + ++  +
Sbjct: 152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE 190



 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 16/195 (8%)

Query: 323 ISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381
           + K+  +  L ++  S       ++G++GPNG GKTT  +ML G   PD G I + E   
Sbjct: 6   MKKTLGEFTLEVEGGSIS--ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDT 62

Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ--QQRIGSL 439
           +SY  Q   + + E TV + +S             +             +Q   + +  L
Sbjct: 63  VSYKPQYIKA-DYEGTVRDLLSS-----ITKDFYTHPYFKTEIAKPLQIEQILDREVPEL 116

Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDR 495
           SGG+  RV +A  L    ++ LLDEP+  LD E        +  FA      A ++ HD 
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176

Query: 496 MFLDRLATHILAFEG 510
           + +D LA  ++ FEG
Sbjct: 177 IMIDYLADRLIVFEG 191


>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
           lysophospholipase L1 biosynthesis, ATPase component
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 228

 Score = 82.3 bits (203), Expect = 3e-16
 Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 52/236 (22%)

Query: 1   MARKFIYHMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID 56
           M  + I  +  LSK  G  +    +L  + L       + I+GP+G+GKST+L ++AG+D
Sbjct: 1   MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60

Query: 57  KEYNGEAWLA---------------TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL 101
              +GE  L                    VG++ Q   L  + T  EN+   +       
Sbjct: 61  DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL------- 113

Query: 102 DRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGE 161
                 +   S       AK   ++++ GL    T         H PA       LSGGE
Sbjct: 114 -----ELRGESSADSRAGAK--ALLEAVGLGKRLT---------HYPA------QLSGGE 151

Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDR 213
           ++RVAL +     PD+L  DEPT +LD  T       +    RE    +++VTHD 
Sbjct: 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207



 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 31/211 (14%)

Query: 317 VIEAKGISKSYNDRL----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
           +IE   +SK+         ++  +   +  G  V ++GP+G+GK+TL  +L G + P SG
Sbjct: 6   IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65

Query: 373 TIHVGETVCLSYVDQSRDSLEAEKT--VWEDISGGDDIVKLNGHEINSRAYCSAFNFKGG 430
            + +         + +R +L A     V++       I  L   E N             
Sbjct: 66  EVRLLGQPLHKLDEDARAALRARHVGFVFQSFH---LIPNLTALE-NVALPLELRGESSA 121

Query: 431 DQQQRI-----------------GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
           D +                      LSGG++ RV LA+      +V+  DEPT +LD  T
Sbjct: 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181

Query: 474 LSALEDAL----ENFAGCAVIISHDRMFLDR 500
              + D L           V+++HD     R
Sbjct: 182 GDKIADLLFALNRERGTTLVLVTHDPQLAAR 212


>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
           component of a bacterial solute transporter that serves
           a protective role to cells growing in a hyperosmolar
           environment.  ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition, to the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 242

 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 21/219 (9%)

Query: 318 IEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE + ++K Y   +  ++NL+ ++  G  + +IGP+G+GKTT  +M+     P SG I +
Sbjct: 1   IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60

Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY--CS 423
            GE +           + YV Q    L    TV E+I+    ++K    +I  RA    +
Sbjct: 61  DGEDIREQDPVELRRKIGYVIQQI-GLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119

Query: 424 AFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL- 481
                  +   R    LSGGQ+ RV +A+ L +   ++L+DEP   LD  T   L++   
Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179

Query: 482 ---ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517
              +      V ++HD     RLA  I A   NG +   
Sbjct: 180 RLQQELGKTIVFVTHDIDEAFRLADRI-AIMKNGEIVQV 217



 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 53/222 (23%)

Query: 12  LSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
           ++K + G KK ++++NL       + ++GP+G+GK+T ++++  + +  +GE ++     
Sbjct: 6   VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI 65

Query: 71  -----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSEK 114
                      +GY+ Q+  L    TV+ENI     +     K+ I +R +EL+      
Sbjct: 66  REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP-KEKIRERADELL------ 118

Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
                           L  L+   + A    H          LSGG+++RV + + L + 
Sbjct: 119 ---------------ALVGLD-PAEFADRYPH---------ELSGGQQQRVGVARALAAD 153

Query: 175 PDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
           P LLL+DEP   LD  T   +++      +E    ++ VTHD
Sbjct: 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195


>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter
           subfamily is involved in extracellular polysaccharide
           export.  Among the variety of membrane-linked or
           extracellular polysaccharides excreted by bacteria, only
           capsular polysaccharides, lipopolysaccharides, and
           teichoic acids have been shown to be exported by ABC
           transporters.  A typical system is made of a conserved
           integral membrane and an ABC.  In addition to these
           proteins, capsular polysaccharide exporter systems
           require two 'accessory' proteins to perform their
           function: a periplasmic (E.coli) or a lipid-anchored
           outer membrane protein called OMA (Neisseria
           meningitidis and Haemophilus influenzae) and a
           cytoplasmic membrane protein MPA2..
          Length = 224

 Score = 82.1 bits (203), Expect = 4e-16
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 47/224 (20%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------AWLATGF 69
           G    L D++       +IG++G NGAGKST+LR++AGI    +G        + L  G 
Sbjct: 33  GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-LGL 91

Query: 70  TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129
             G+    P+L    T +ENI              N  ++  S K  E   K+ +II+  
Sbjct: 92  GGGF---NPEL----TGRENI------------YLNGRLLGLSRK--EIDEKIDEIIEFS 130

Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
            L D           +  P     + + S G K R+A        PD+LL+DE     DA
Sbjct: 131 ELGD----------FIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175

Query: 190 ETIAWMEKYLREY---SGAVLMVTHDRYFLDNVTNWILEVDRGK 230
                 ++ LRE       V++V+HD   +  + +  L +++GK
Sbjct: 176 AFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219



 Score = 81.0 bits (200), Expect = 8e-16
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 7/216 (3%)

Query: 307 IPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD 366
              G       +   G      +   + ++SF++P G  +G+IG NGAGK+TL R+L G 
Sbjct: 12  TYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71

Query: 367 ESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCSAF 425
             PDSGT+ V   V              E T  E+I     ++ L+  EI+ +      F
Sbjct: 72  YPPDSGTVTVRGRVSSLLGLGG--GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF 129

Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF- 484
           +  G      + + S G + R+  A       +++L+DE     D       +  L    
Sbjct: 130 SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189

Query: 485 --AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFE 518
                 +++SHD   + RL    L  E  G + +  
Sbjct: 190 KQGKTVILVSHDPSSIKRLCDRALVLE-KGKIRFDG 224


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score = 81.7 bits (202), Expect = 4e-16
 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 46/231 (19%)

Query: 1   MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------- 52
             +     +  L+  +G K  L DINL    +    ++GP+G GKST+LR +        
Sbjct: 2   TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61

Query: 53  -AGIDKE--YNGEAWLATGF-------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILD 102
            A ++ E   +G+               VG + Q+P      ++ +N+  G+        
Sbjct: 62  GARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP-FPMSIYDNVAYGL-------- 112

Query: 103 RYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEK 162
           R + +     +K  +EI   +  +    LWD   EV+   + LH  A       LSGG++
Sbjct: 113 RLHGIK----DKELDEIV--ESSLKKAALWD---EVK---DRLHKSA-----LGLSGGQQ 155

Query: 163 RRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211
           +R+ + + L   P++LL+DEPT+ LD  +   +E+ + E      +++VTH
Sbjct: 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH 206



 Score = 71.3 bits (175), Expect = 6e-13
 Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 30/249 (12%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
             IE + ++  Y D+  + +++  +P   +  +IGP+G GK+TL R L        G   
Sbjct: 6   PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65

Query: 376 VGETVCL--SYVDQSRDSLEA--------------EKTVWEDISGGDDIVKLNGHEINSR 419
            GE +    +  D   D +E                 +++++++ G  +  +   E++  
Sbjct: 66  EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEI 125

Query: 420 AYCSAFNFKGG-------DQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
              S    K         D+  +    LSGGQ+ R+ +A+ L     V+L+DEPT+ LD 
Sbjct: 126 VESS---LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182

Query: 472 ETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKL 529
            +   +E+ +         VI++H+     R++ +  AF   G +  F    + +   K 
Sbjct: 183 ISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYT-AFFYLGELVEFGPTDKIFTNPKH 241

Query: 530 SRSSRVLSG 538
            R+   +SG
Sbjct: 242 KRTEDYISG 250


>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a large
           family of proteins responsible for translocation of a
           variety of compounds across biological membranes. ABC
           transporters are the largest family of proteins in many
           completely sequenced bacteria. ABC transporters are
           composed of two copies of this domain and two copies of
           a transmembrane domain pfam00664. These four domains may
           belong to a single polypeptide or belong in different
           polypeptide chains.
          Length = 119

 Score = 81.2 bits (201), Expect = 6e-16
 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 45/152 (29%)

Query: 46  STILRIMAGIDKEYNGEAWLATGF------------TVGYLPQEPQLDLSKTVKENIIEG 93
           ST+L+++ G+ +  +G   L                 +G + Q+PQL    TV+EN+  G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 94  VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN 153
           +  K+A   R  E +                     GL D                D   
Sbjct: 61  LRDKEA-DARAEEALERV------------------GLPDF--------------LDRSP 87

Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
           + +LSGG+K+RVA+ + LL  P LLLLDEPT 
Sbjct: 88  VGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119



 Score = 75.4 bits (186), Expect = 4e-14
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 20/125 (16%)

Query: 357 TTLFRMLTGDESPDSGTIHVGETV------------CLSYVDQSRDSLEAEKTVWEDISG 404
           +TL +++TG   P SGTI +                 +  V Q    L  E TV E++  
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQD-PQLFPELTVRENLFF 59

Query: 405 GDDIVKLNGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILL 462
           G         E ++RA              +  +G+LSGGQ+ RV +A+ L     ++LL
Sbjct: 60  GLRD-----KEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLL 114

Query: 463 DEPTN 467
           DEPT 
Sbjct: 115 DEPTA 119


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 223

 Score = 81.2 bits (200), Expect = 7e-16
 Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 50/214 (23%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA-WLATGFT----- 70
           G  K+L++I+LS      I I GP+G GKST+L+I+A +    +G   +     +     
Sbjct: 14  GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73

Query: 71  -----VGYLPQEPQLDLSKTVKENII--EGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
                V Y  Q P L    TV++N+I    + +++       +L+             L 
Sbjct: 74  AYRQQVSYCAQTPAL-FGDTVEDNLIFPWQIRNRRPDRAAALDLL---------ARFALP 123

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
           D I +K                       NIT LSGGEK+R+AL + L   P +LLLDE 
Sbjct: 124 DSILTK-----------------------NITELSGGEKQRIALIRNLQFMPKILLLDEI 160

Query: 184 TNHLD---AETI-AWMEKYLREYSGAVLMVTHDR 213
           T+ LD      I   + +Y+RE + AVL +THD+
Sbjct: 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194



 Score = 73.5 bits (180), Expect = 1e-13
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           ++E K +     D  +++N+S  +  G  + + GP+G GK+TL +++    SP SGT+  
Sbjct: 3   LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62

Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425
            GE V           +SY  Q+        TV +++     I         +    + F
Sbjct: 63  EGEDVSTLKPEAYRQQVSYCAQTPALF--GDTVEDNLIFPWQIRNRRPDRAAALDLLARF 120

Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
                   + I  LSGG++ R+ L + L+    ++LLDE T+ LD      +E+ +
Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176


>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
           [Coenzyme metabolism].
          Length = 231

 Score = 80.7 bits (199), Expect = 1e-15
 Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 43/236 (18%)

Query: 24  DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA----TGFT-----VGYL 74
             +L+      + ILGP+GAGKST+L ++AG +   +GE  +     T        V  L
Sbjct: 17  RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76

Query: 75  PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134
            QE  L    TV +NI  G++    +                E+  K++      GL   
Sbjct: 77  FQENNLFAHLTVAQNIGLGLSPGLKL--------------NAEQREKVEAAAAQVGLAGF 122

Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AE 190
              +                  LSGG+++RVAL + L+    +LLLDEP + LD    AE
Sbjct: 123 LKRLP---------------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167

Query: 191 TIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKA 246
            +A + +   E    +LMVTH       + + ++ +D G+ I  QG+    L  KA
Sbjct: 168 MLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGR-IAAQGSTQELLSGKA 222



 Score = 74.6 bits (183), Expect = 7e-14
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           +    +  SY    +  +L+   P G IV ++GP+GAGK+TL  ++ G E+P SG I + 
Sbjct: 2   LALDDVRFSYGHLPMRFDLTV--PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59

Query: 377 GETVCLSYVDQ-------SRDSLEAEKTVWEDIS-GGDDIVKLNGHEINSRAYCSAFNFK 428
           G     S   +         ++L A  TV ++I  G    +KLN  +       +A    
Sbjct: 60  GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119

Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENF 484
            G  ++  G LSGGQR RV LA+ L     ++LLDEP + LD     E L+ +    +  
Sbjct: 120 AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179

Query: 485 AGCAVIISHDRMFLDRLATHILAFEGNGHVEW 516
               ++++H      R+A  ++  + NG +  
Sbjct: 180 KMTLLMVTHHPEDAARIADRVVFLD-NGRIAA 210


>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
           ModC is an ABC-type transporter and the ATPase component
           of a molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 43/215 (20%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----A 66
            LSK +   K L +++L         ILGP G+GKS +L  +AG  K  +G+  L     
Sbjct: 5   NLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63

Query: 67  TGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
           T        + Y+PQ   L    TV +NI  G+  ++                 +E   K
Sbjct: 64  TNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK--------------VDKKEIERK 109

Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
           + +I +  G+  L          L+         +LSGGE++RVA+ + L+ +P +LLLD
Sbjct: 110 VLEIAEMLGIDHL----------LN-----RKPETLSGGEQQRVAIARALVVNPKILLLD 154

Query: 182 EPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212
           EP + LD  T       ++K  +E+   VL VTHD
Sbjct: 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189



 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           ++ + +SK + +  L  N+S ++  G    ++GP G+GK+ L   + G   PDSG I + 
Sbjct: 1   LKVENLSKDWKEFKL-KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59

Query: 377 GETVC--------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK 428
           G+ +         +SYV Q+  +L    TV+++I+ G    K++  EI  +    A    
Sbjct: 60  GKDITNLPPEKRDISYVPQNY-ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA-EML 117

Query: 429 GGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALE 482
           G D    ++  +LSGG++ RV +A+ L     ++LLDEP + LD  T       L+   +
Sbjct: 118 GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177

Query: 483 NFAGCAVIISHD----RMFLDRLA 502
            F    + ++HD        D++A
Sbjct: 178 EFGVTVLHVTHDFEEAWALADKVA 201


>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
           mitochondrial ATP-binding cassette protein involved in
           iron homeostasis and one of four ABC transporters
           expressed in the mitochondrial inner membrane, the other
           three being MDL1(ABC7), MDL2, and ATM1.  In fact, the
           yeast MDL1 (multidrug resistance-like protein 1) and
           MDL2 (multidrug resistance-like protein 2) transporters
           are also included in this CD.  MDL1 is an ATP-dependent
           permease that acts as a high-copy suppressor of ATM1 and
           is thought to have a role in resistance to oxidative
           stress. Interestingly, subfamily B is more closely
           related to the carboxyl-terminal component of subfamily
           C than the two halves of ABCC molecules are with one
           another..
          Length = 238

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 29/229 (12%)

Query: 318 IEAKGISKSYNDR---LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
           IE K +S  Y  R    ++  LS  +PPG  V ++G +G GK+T+  +L     P SG I
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 375 HV-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
            + G  +           +  V Q     +   T+ E+I  G         E  ++   +
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG--TIAENIRYGKPDATDEEVEEAAKK-AN 117

Query: 424 AFNF-----KGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
             +F      G D    +R   LSGGQ+ R+ +A+ L     ++LLDE T+ LD E+   
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177

Query: 477 LEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           +++AL+        ++I+H R+   R A  I   +    VE  +G  +E
Sbjct: 178 VQEALDRAMKGRTTIVIAH-RLSTIRNADLIAVLQNGQVVE--QGTHDE 223



 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 46/188 (24%)

Query: 20  KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GID-KEYNGEAWL 65
            +L  ++L+  P   + ++G +G GKST++ ++              G+D ++ N     
Sbjct: 17  PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
           +    +G + QEP L    T+ ENI  G                + +++  EE AK  +I
Sbjct: 77  SQ---IGLVSQEPVL-FDGTIAENIRYGKP--------------DATDEEVEEAAKKANI 118

Query: 126 ID-SKGLWD-LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
            D    L D  +T V            G   + LSGG+K+R+A+ + LL +P +LLLDE 
Sbjct: 119 HDFIMSLPDGYDTLV------------GERGSQLSGGQKQRIAIARALLRNPKILLLDEA 166

Query: 184 TNHLDAET 191
           T+ LDAE+
Sbjct: 167 TSALDAES 174


>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
           (EP) precursor transport, regulation of
           lipid-trafficking mechanisms, and pleiotropic drug
           resistance (DR).  DR is a well-described phenomenon
           occurring in fungi and shares several similarities with
           processes in bacteria and higher eukaryotes.  Compared
           to other members of the ABC transporter subfamilies, the
           ABCG transporter family is composed of proteins that
           have an ATP-binding cassette domain at the N-terminus
           and a TM (transmembrane) domain at the C-terminus..
          Length = 194

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 73/234 (31%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG--IDKEYNGEAWL--------A 66
             K++L +++    P     I+GP+GAGKST+L  +AG       +GE  +        +
Sbjct: 20  SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRS 79

Query: 67  TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
               +GY+PQ+  L  + TV+E                  LM           AKL+ + 
Sbjct: 80  FRKIIGYVPQDDILHPTLTVRET-----------------LMFA---------AKLRGL- 112

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
                                          SGGE++RV++   L+S+P LL LDEPT+ 
Sbjct: 113 -------------------------------SGGERKRVSIALELVSNPSLLFLDEPTSG 141

Query: 187 LDAETIAWMEKYLREYSGA---VLMVTHD-RYFLDNVTNWILEVDRGKGIPYQG 236
           LD+ +   +   LR  +     ++   H     +  + + +L + +G+ I Y G
Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI-YFG 194



 Score = 78.3 bits (193), Expect = 6e-15
 Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 47/196 (23%)

Query: 315 HVVIEAKGISK------SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG--D 366
            V +  + ++       S + + L+ N+S K  PG +  ++GP+GAGK+TL   L G   
Sbjct: 1   GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60

Query: 367 ESPDSGTIHVGET--------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS 418
               SG + +             + YV Q  D L    TV E +                
Sbjct: 61  GLGVSGEVLINGRPLDKRSFRKIIGYVPQD-DILHPTLTVRETL---------------- 103

Query: 419 RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478
               +A          ++  LSGG+R RV +A  L S  +++ LDEPT+ LD+ +   + 
Sbjct: 104 --MFAA----------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM 151

Query: 479 DALENFA--GCAVIIS 492
             L   A  G  +I S
Sbjct: 152 SLLRRLADTGRTIICS 167


>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 716

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 27/229 (11%)

Query: 317 VIEAKGISKSYNDR---LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
           VIE + +S +Y  R    ++ NLSF + PG +V ++GP+G+GK+T+  +L     P SG 
Sbjct: 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524

Query: 374 IHVGETVCLSYVD----------QSRDSLEAEKTVWEDISGGDDIVKLNGHEINS---RA 420
           I +   V +S ++            ++ +    ++ E+I+ G D       EI +    A
Sbjct: 525 ILLDG-VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NATDEEIEAAAKMA 581

Query: 421 YCSAF--NFKGGDQQQ---RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
               F  NF  G       +   LSGGQ+ R+ +A+ L     V++LDE T+ LD E+  
Sbjct: 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641

Query: 476 ALEDALE-NFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
            +++AL+    G  V++   R+   R A  I+  +    VE   G  +E
Sbjct: 642 LVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE--MGTHDE 688



 Score = 75.8 bits (186), Expect = 3e-14
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 52/211 (24%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GID-KEYNGEAWLA 66
           VL +++ +  P   + ++GP+G+GKSTI  ++              G+   + N + +L 
Sbjct: 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK-YLR 541

Query: 67  TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT--EEEIAKLQD 124
               +G + QEP L  S +++ENI  G      + +  +E +   ++     E I    D
Sbjct: 542 R--KIGLVGQEPVL-FSGSIRENIAYG------LDNATDEEIEAAAKMANAHEFITNFPD 592

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
                      T V            G   + LSGG+K+R+A+ + LL +P +L+LDE T
Sbjct: 593 --------GYNTVV------------GEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT 632

Query: 185 NHLDAETIA----WMEKYLREYSGAVLMVTH 211
           + LDAE+       +++ ++  +  VL++ H
Sbjct: 633 SALDAESEYLVQEALDRLMQGRT--VLVIAH 661


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 46/205 (22%)

Query: 317 VIEAKGISKSYNDRLL---------IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367
           ++E K + K +              +D +SF +  G  +G++G +G GK+TL R++ G E
Sbjct: 4   LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63

Query: 368 SPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAF 425
            P SG I                           +  G DI KL+  E   R        
Sbjct: 64  EPTSGEI---------------------------LFEGKDITKLSKEERRERVLELLEKV 96

Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDAL 481
                   +    LSGGQR R+ +A+ L     +I+ DEP + LD     + L+ L+D  
Sbjct: 97  GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ 156

Query: 482 ENFAGCAVIISHD----RMFLDRLA 502
           E      + ISHD    R   DR+A
Sbjct: 157 EELGLTYLFISHDLSVVRYISDRIA 181



 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 64/225 (28%)

Query: 4   KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
           K  + +          K +D ++ S      +G++G +G GKST+ R++ G+++  +GE 
Sbjct: 11  KKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI 70

Query: 64  WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY-NELMMNYSEKTEEEIAKL 122
                       +E +    + V E ++E V   +  L RY +EL               
Sbjct: 71  LFEGKDITKLSKEERR----ERVLE-LLEKVGLPEEFLYRYPHEL--------------- 110

Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
                                              SGG+++R+ + + L  +P L++ DE
Sbjct: 111 -----------------------------------SGGQRQRIGIARALALNPKLIVADE 135

Query: 183 PTNHLD----AETIAWMEKYLREYSGAVLMVTHD----RYFLDNV 219
           P + LD    A+ +  ++    E     L ++HD    RY  D +
Sbjct: 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRI 180


>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 316

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 50/222 (22%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-IMAGIDKE----------YNGEAWL 65
           G  K +D ++        +GI+G +G+GKS + + IM  + K           ++G+  L
Sbjct: 16  GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75

Query: 66  AT---------GFTVGYLPQEPQ--LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
           +          G  +  + Q+P   L+   T+ + I E +        R +   ++  E 
Sbjct: 76  SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--------RLHGKGLSKKEA 127

Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
            E  I  L+ +        +    +      H          LSGG ++RV +   L  +
Sbjct: 128 KERAIELLELV-------GIPDPERRLKSYPH---------ELSGGMRQRVMIAMALALN 171

Query: 175 PDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
           P LL+ DEPT  LD    A+ +  +++  RE   A++++THD
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213



 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 43/258 (16%)

Query: 317 VIEAKGISKSYNDR----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
           ++E K +S S+         +D +SF+L  G I+G++G +G+GK+ L + + G     + 
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60

Query: 373 TIHVGETVCLSYVDQSRDSL---EAEKTVWEDISG---------------GDDIVK--LN 412
            I  GE   + +  +   SL   E  K   ++I+                GD I +    
Sbjct: 61  RIVGGE---ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117

Query: 413 GHEINSRAY-----CSAFNFKGGDQQQRIGS-----LSGGQRGRVHLAKILKSGGNVILL 462
             +  S+              G    +R        LSGG R RV +A  L     +++ 
Sbjct: 118 HGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177

Query: 463 DEPTNDLDTETLSALEDALENFA---GCAVI-ISHDRMFLDRLATHILAFEGNGHVEWFE 518
           DEPT  LD    + + D L+      G A+I I+HD   +  +A  +        VE  E
Sbjct: 178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE--E 235

Query: 519 GNFEEYEKDKLSRSSRVL 536
           G  EE  K+     +R L
Sbjct: 236 GPVEEIFKNPKHPYTRGL 253


>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
           system, ATPase component [Carbohydrate transport and
           metabolism / Cell envelope biogenesis, outer membrane].
          Length = 249

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 47/220 (21%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------AWLATGFTVGY 73
            L DI+   Y   ++GI+G NGAGKST+L+++AGI K  +G+       A L      G+
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL-IELGAGF 100

Query: 74  LPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133
              +P+L    T +ENI                L++  + K  +E  K+ +II+   L D
Sbjct: 101 ---DPEL----TGRENI------------YLRGLILGLTRKEIDE--KVDEIIEFAELGD 139

Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193
                      +  P     + + S G   R+A        PD+LLLDE     DA    
Sbjct: 140 F----------IDQP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184

Query: 194 WMEKYLREY---SGAVLMVTHDRYFLDNVTNWILEVDRGK 230
              + L E    +  +++V+HD   +    +  + ++ G+
Sbjct: 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQ 224



 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 12/210 (5%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392
           + ++SF++  G  VG+IG NGAGK+TL +++ G   P SG + V   V  + + +     
Sbjct: 43  LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV--APLIELGAGF 100

Query: 393 EAEKTVWEDISGGDDIVKLNGHEINSRA-YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK 451
           + E T  E+I     I+ L   EI+ +      F   G    Q + + S G   R+  + 
Sbjct: 101 DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSV 160

Query: 452 ILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGCAVIISHDRMFLDRLATHILAF 508
                 +++LLDE     D        + L          V++SHD   + +     +  
Sbjct: 161 ATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL 220

Query: 509 EGNGHVEWFEGNFEE----YEKDKLSRSSR 534
           E +G +   EG+ EE    YE+D   R S 
Sbjct: 221 E-HGQIR-MEGSPEEVIPAYEEDLADRLSL 248


>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 237

 Score = 78.2 bits (193), Expect = 5e-15
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           ++E + +S  Y     +  +S ++  G IV ++G NGAGKTTL + + G   P SG I  
Sbjct: 3   MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF 62

Query: 377 -GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS--RAYC 422
            GE +            ++YV + R       TV E++  G    +    +       Y 
Sbjct: 63  DGEDITGLPPHERARLGIAYVPEGRRIF-PRLTVEENLLLGAYARRDKEAQERDLEEVY- 120

Query: 423 SAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
             F      + QR G+LSGG++  + +A+ L S   ++LLDEP+
Sbjct: 121 ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164



 Score = 74.7 bits (184), Expect = 6e-14
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 45/221 (20%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
            LS  +G  + L  ++L       + +LG NGAGK+T+L+ + G+ +  +G         
Sbjct: 8   NLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI 67

Query: 67  TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
           TG          + Y+P+  ++    TV+EN++ G     A   R  E      E+  E 
Sbjct: 68  TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG-----AYARRDKEAQERDLEEVYEL 122

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
             +L++  + +                          +LSGGE++ +A+ + L+S P LL
Sbjct: 123 FPRLKERRNQRA------------------------GTLSGGEQQMLAIARALMSRPKLL 158

Query: 179 LLDEPTNHLD---AETIAWMEKYLREYSG-AVLMVTHDRYF 215
           LLDEP+  L     E I    K LR+  G  +L+V  +  F
Sbjct: 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF 199


>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
           component [General function prediction only].
          Length = 249

 Score = 77.6 bits (191), Expect = 8e-15
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           ++   G+S S+     +++LSF + PG +  +IGPNGAGKTTL  ++TG   P  G +  
Sbjct: 5   ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64

Query: 377 GETVCLSYVDQSR----------------------DSLE----AEKTVWEDISGGDDIVK 410
                L+ + + R                      ++LE     +K+V+  +       +
Sbjct: 65  DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA-----R 119

Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
           L   E        A    G ++ +    LS GQ+  + +  +L     ++LLDEP   + 
Sbjct: 120 LRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179

Query: 471 TETLSALEDALENFAG-CAVI-ISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKD 527
                   + L++ AG  +++ + HD  F+  +A  +      G V   EG+ +E + D
Sbjct: 180 DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLH-EGSV-LAEGSLDEVQND 236



 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 36/226 (15%)

Query: 6   IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
           I ++ G+S  FG  K L+D++ S  P     ++GPNGAGK+T++ ++ G  +   GE   
Sbjct: 5   ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64

Query: 66  ATGFTVGYLP-------------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112
                +  LP             Q+P +  + TV+EN+   +   +++          ++
Sbjct: 65  DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASL------FA 118

Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
               EE  ++ +++ + GL D               A       LS G+K+ + +  LL 
Sbjct: 119 RLRAEERRRIDELLATIGLGDER----------DRLA-----ALLSHGQKQWLEIGMLLA 163

Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFL 216
             P LLLLDEP   +         + L+  +G  ++L+V HD  F+
Sbjct: 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV 209


>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
           LIV-I bacterial ABC-type two-component transport system
           that imports neutral, branched-chain amino acids.  The
           E. coli branched-chain amino acid transporter comprises
           a heterodimer of ABC transporters (LivF and LivG), a
           heterodimer of six-helix TM domains (LivM and LivH), and
           one of two alternative soluble periplasmic substrate
           binding proteins (LivK or LivJ).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules..
          Length = 222

 Score = 77.4 bits (191), Expect = 8e-15
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
           +E + ++  Y    ++  +S  +P G IV ++G NGAGKTTL + + G   P SG+I   
Sbjct: 1   LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60

Query: 377 GETVC-----------LSYVDQSRDSLEAEKTVWEDI-SGGDDIVKLNGHEINSRAYCSA 424
           G  +            + YV + R  +  E TV E++  G     +        R Y   
Sbjct: 61  GRDITGLPPHERARAGIGYVPEGRR-IFPELTVEENLLLGAYARRRAKRKARLERVY-EL 118

Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
           F      ++Q  G+LSGG++  + +A+ L S   ++LLDEP+
Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160



 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 55/219 (25%)

Query: 11  GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
            L+  +G  ++L  ++L+      + +LG NGAGK+T+L+ + G+    +G         
Sbjct: 5   NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI 64

Query: 67  TGFT--------VGYLPQEPQLDLSKTVKENIIEGV-----AHKQAILDRYNELMMNYSE 113
           TG          +GY+P+  ++    TV+EN++ G      A ++A L+R  EL      
Sbjct: 65  TGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF----- 119

Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173
                  +L++                               +LSGGE++ +A+ + L+S
Sbjct: 120 ------PRLKERRKQLA------------------------GTLSGGEQQMLAIARALMS 149

Query: 174 SPDLLLLDEPTNHLD---AETIAWMEKYLREYSGAVLMV 209
            P LLLLDEP+  L     E I    + LR+    +L+V
Sbjct: 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188


>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
           cytochrome bd biogenesis.  The CydC and CydD proteins
           are important for the formation of cytochrome bd
           terminal oxidase of E. coli and it has been proposed
           that they were necessary for biosynthesis of the
           cytochrome bd quinol oxidase and for periplasmic c-type
           cytochromes.  CydCD were proposed to determine a
           heterooligomeric complex important for heme export into
           the periplasm or to be involved in the maintenance of
           the proper redox state of the periplasmic space.  In
           Bacillus subtilius, the absence of CydCD does not affect
           the presence of halo-cytochrome c in the membrane and
           this observation suggests that CydCD proteins are not
           involved in the export of heme in this organism..
          Length = 178

 Score = 77.6 bits (191), Expect = 9e-15
 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 35/183 (19%)

Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           +    +S SY   ++ ++ NLS +L  G  + ++G +G+GK+TL ++LTGD  P  G I 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR 435
           +               +                       +N R Y   F+      +  
Sbjct: 61  LDGVPVSDLEKALSSLISV---------------------LNQRPYL--FD---TTLRNN 94

Query: 436 IGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVI 490
           +G   SGG+R R+ LA+IL     ++LLDEPT  LD  T    LS + + L++     + 
Sbjct: 95  LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD--KTLIW 152

Query: 491 ISH 493
           I+H
Sbjct: 153 ITH 155



 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 63/218 (28%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77
            ++VL +++L      KI +LG +G+GKST+L+++ G  K   GE           L   
Sbjct: 14  EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI---------TLDGV 64

Query: 78  PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
           P  DL K +   I   V +++  L  ++  + N                           
Sbjct: 65  PVSDLEKALSSLI--SVLNQRPYL--FDTTLRN--------------------------- 93

Query: 138 VQVAIESLHCPADGLNI-TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET----I 192
                          N+    SGGE++R+AL ++LL    ++LLDEPT  LD  T    +
Sbjct: 94  ---------------NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138

Query: 193 AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           + + + L++ +  ++ +TH    ++++ + IL ++ GK
Sbjct: 139 SLIFEVLKDKT--LIWITHHLTGIEHM-DKILFLENGK 173


>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
           protein.  In A. tumefaciens cyclic beta-1, 2-glucan must
           be transported into the periplasmic space to exert its
           action as a virluence factor.  This subfamily belongs to
           the MRP-like family and is involved in drug, peptide,
           and lipid export.  The MRP-like family, similar to all
           ABC proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains each
           composed of six transmembrane (TM) helices and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 229

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 23/225 (10%)

Query: 318 IEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE + ++ SY+  + ++ +++F + PG  V ++GP GAGKTTL  +L     P  G I +
Sbjct: 3   IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62

Query: 377 GETVCLSYVDQS---------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF 427
                     +S         +D+     T+ E+I  G      +   I +     A +F
Sbjct: 63  DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNAT-DEEVIEAAKEAGAHDF 121

Query: 428 -----KGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480
                 G D    +  G+LS G+R  + +A+ +     +++LDE T+++DTET   +++A
Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181

Query: 481 LENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           LE       ++II+H R+   + A  IL  +    +E  EG  +E
Sbjct: 182 LEKLMKGRTSIIIAH-RLSTIKNADKILVLDDGKIIE--EGTHDE 223



 Score = 72.1 bits (177), Expect = 4e-13
 Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 56/248 (22%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRI-------------MAGIDKEYNGEAWL 65
           K VL DIN S  P   + I+GP GAGK+T++ +             + GID        L
Sbjct: 16  KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA----K 121
            +    G + Q+  L  S T+ ENI            R        +   E   A     
Sbjct: 76  RSMI--GVVLQDTFL-FSGTIMENI------------RLGR---PNATDEEVIEAAKEAG 117

Query: 122 LQDIIDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
             D I     G    +T +            G N  +LS GE++ +A+ + +L  P +L+
Sbjct: 118 AHDFIMKLPNG---YDTVL------------GENGGNLSQGERQLLAIARAMLRDPKILI 162

Query: 180 LDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGN 237
           LDE T+++D ET   +++ L +       +++ H    + N    IL +D GK I  +G 
Sbjct: 163 LDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADK-ILVLDDGK-IIEEGT 220

Query: 238 YSAYLQMK 245
           +   L  K
Sbjct: 221 HDELLAKK 228


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 32/229 (13%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           ++   G+SK Y       ++SF L PG ++G++G +G+GKTTL + ++G  +PD+GT+  
Sbjct: 6   LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65

Query: 377 GETVCLSYVDQSRDSLEAE-----KTVW------------EDISGGDDIVKL-----NGH 414
                    D    S EAE     +T W              +S G +I +        H
Sbjct: 66  -RMRDGQPRDLYTMS-EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123

Query: 415 EINSRAYCSAFNFKGGDQQQRIGSL----SGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
             N RA    +  +      RI  L    SGG + R+ +A+ L +   ++ +DEPT  LD
Sbjct: 124 YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183

Query: 471 TETLSALEDALE----NFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
               + L D L           VI++HD      LA  ++  +    VE
Sbjct: 184 VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232



 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 27/225 (12%)

Query: 1   MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
           M  K +  ++GLSK++G  K   D++   YP   +GI+G +G+GK+T+L+ ++G      
Sbjct: 1   MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISG------ 54

Query: 61  GEAWLATGFTVGYLPQEPQ----LDLSKTVKENIIE---GVAHKQAILDRYNELMMNYSE 113
                    TV Y  ++ Q      +S+  +  ++    G  H+       + L M  S 
Sbjct: 55  --RLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR----DGLRMQVSA 108

Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLL 171
                I +    I ++   ++  E Q  +E +    D ++    + SGG ++R+ + + L
Sbjct: 109 GGN--IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL 166

Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHD 212
           ++ P L+ +DEPT  LD    A +   LR    E   AV++VTHD
Sbjct: 167 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score = 77.0 bits (189), Expect = 1e-14
 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 36/229 (15%)

Query: 300 PGNAQIIIPVGKRLGHVVIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTT 358
           PG   + +  GK      IE   ++ +Y+    ++ ++SF + PG  V ++GP+GAGK+T
Sbjct: 526 PGAPPLKVTQGK------IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKST 579

Query: 359 LFRMLTGDESPDSGTIHVGETVCLSYVDQS---------RDSLEAEKTVWEDI-----SG 404
           + R+L      +SG+I +      +    S         +D++    T+  +I     S 
Sbjct: 580 IMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSA 639

Query: 405 GDDIV--KLNGHEINSR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460
            ++ V       +I+ R   +   +N + G++  +   LSGG++ RV +A+ +    ++I
Sbjct: 640 SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK---LSGGEKQRVAIARTILKAPSII 696

Query: 461 LLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILA 507
           LLDE T+ LDT T  A++ AL         ++++H      RL+T + A
Sbjct: 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAH------RLSTIVNA 739



 Score = 66.2 bits (161), Expect = 2e-11
 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 46/260 (17%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGIDKEYNGEAWL 65
           K VL DI+ +  P   + ++GP+GAGKSTI+R++              G D     ++ L
Sbjct: 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
            +  ++G +PQ+  L  + T+  NI            RY +   + S +     AK   I
Sbjct: 611 RS--SIGVVPQDTVL-FNDTILYNI------------RYAKP--SASNEEVYAAAKAAQI 653

Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
            D    +      +V    L           LSGGEK+RVA+ + +L +P ++LLDE T+
Sbjct: 654 HDRILQFPEGYNTRVGERGL----------KLSGGEKQRVAIARTILKAPSIILLDEATS 703

Query: 186 HLDAETIAWMEKYL-REYSGAVLMVTHDRYFLDNVTN--WILEVDRGKGIPYQGNYSAYL 242
            LD  T   ++  L R  +    +V   R  L  + N   IL +  G+ I  +G +   L
Sbjct: 704 ALDTNTERAIQAALARLCANRTTIVVAHR--LSTIVNADLILVISNGR-IVERGRHEELL 760

Query: 243 QMKAKRMAQENREEISRQKA 262
           +      A   + + +  K 
Sbjct: 761 KRDGGAYADMWQAQQAMGKT 780


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
           the bacterial CcmAB transporter.  The CCM family is
           involved in bacterial cytochrome c biogenesis.
           Cytochrome c maturation in E. coli requires the ccm
           operon, which encodes eight membrane proteins
           (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
           that binds heme covalently and transfers it onto
           apocytochrome c in the presence of CcmF, CcmG, and CcmH.
            The CcmAB proteins represent an ABC transporter and the
           CcmCD proteins participate in heme transfer to CcmE..
          Length = 201

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 23/191 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +EA  ++   + R L   LSF L  G  + V GPNG+GKTTL R+L G   P +G + + 
Sbjct: 1   LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60

Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK--------- 428
                  +D  RDS+ A   ++  +     I        N R +  A +           
Sbjct: 61  GGP----LDFQRDSI-ARGLLY--LGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALAR 112

Query: 429 ---GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485
               G + + +  LS GQ+ RV LA++L SG  + +LDEPT  LD   ++   +A+    
Sbjct: 113 VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172

Query: 486 ---GCAVIISH 493
              G  V+ +H
Sbjct: 173 ARGGMVVLTTH 183



 Score = 73.8 bits (181), Expect = 1e-13
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 30/179 (16%)

Query: 37  ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
           + GPNG+GK+T+LRI+AG+     G            L   P      ++   ++  + H
Sbjct: 31  VTGPNGSGKTTLLRILAGLSPPLAGRV---------LLNGGPLDFQRDSIARGLLY-LGH 80

Query: 97  KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV-AIESLHCPADGLNIT 155
              I    +           E +         + + +    V +   E            
Sbjct: 81  APGIKTTLS---------VLENLRFWHADHSDEQVEEALARVGLNGFEDRPV-------A 124

Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTH 211
            LS G++RRVAL +LLLS   L +LDEPT  LD   +A   + +  +    G V++ TH
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183


>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
           related to eukaryotic MDR proteins.  ABC transporters
           are a large family of proteins involved in the transport
           of a wide variety of different compounds, like sugars,
           ions, peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 234

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 28/228 (12%)

Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           +E K ++  Y      ++ ++S  +P G  V ++GP+G+GK+TL  ++      DSG I 
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 376 V-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
           + G  V           +  V Q  D      TV E+I+ G         E  +RA   A
Sbjct: 61  IDGHDVRDYTLASLRRQIGLVSQ--DVFLFNDTVAENIAYGRPGATREEVEEAARAAN-A 117

Query: 425 FNF-----KGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
             F     +G D    +R   LSGGQR R+ +A+ L     +++LDE T+ LDTE+   +
Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177

Query: 478 EDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
           + ALE         +I+H R+     A  I+  E    VE   G  EE
Sbjct: 178 QAALERLMKNRTTFVIAH-RLSTIENADRIVVLEDGKIVE--RGTHEE 222



 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 52/192 (27%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GIDKEYNGEAWL 65
             VL DI+L       + ++GP+G+GKST++ ++              G D      A L
Sbjct: 15  PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL 74

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI------ 119
                +G + Q+  L  + TV ENI  G                     T EE+      
Sbjct: 75  RR--QIGLVSQDVFL-FNDTVAENIAYGR-----------------PGATREEVEEAARA 114

Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
           A   + I        +T +            G     LSGG+++R+A+ + LL  P +L+
Sbjct: 115 ANAHEFIMELPE-GYDTVI------------GERGVKLSGGQRQRIAIARALLKDPPILI 161

Query: 180 LDEPTNHLDAET 191
           LDE T+ LD E+
Sbjct: 162 LDEATSALDTES 173


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score = 75.3 bits (185), Expect = 4e-14
 Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386
           Y +   +  +SF +  G IVG IGPNGAGKTT  ++L+G   P SG + V   V      
Sbjct: 31  YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90

Query: 387 QSRDSLEA----EKTVWEDISGGD------DIVKLN-GHEINSRAYCSAFNFKGGDQQQR 435
           +    +      +  +W D+   D       I  L            S            
Sbjct: 91  KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP 150

Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA---GCAVII- 491
           +  LS GQR R  +A  L     ++ LDEPT  LD      + + L+ +    G  V++ 
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210

Query: 492 SHDRMFLDRLATHIL 506
           SH    ++ LA  +L
Sbjct: 211 SHYMKDIEALARRVL 225



 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 31/227 (13%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77
             + L  I+ +      +G +GPNGAGK+T L+I++G+ +  +GE  +A     G +P +
Sbjct: 33  EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA-----GLVPWK 87

Query: 78  PQLDLSKTVKENIIEG----VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133
            +    + +   ++ G    +     ++D +  L   Y         +L ++ +   L D
Sbjct: 88  RRKKFLRRI--GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE---LLD 142

Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA---E 190
           LE       E L  P     +  LS G++ R  +   LL  P++L LDEPT  LD    E
Sbjct: 143 LE-------ELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190

Query: 191 TI-AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236
            I  ++++Y RE    VL+ +H    ++ +   +L +D+G+ + Y G
Sbjct: 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR-LLYDG 236


>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
           assembly, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 251

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 49/228 (21%)

Query: 14  KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK--------EYNGEAWL 65
           +V G K++L  +NL+        I+GPNG+GKST+   + G  K         ++GE  L
Sbjct: 12  EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71

Query: 66  --------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
                     G  + +  Q P            I GV +   +    N           E
Sbjct: 72  ELSPDERARAGIFLAF--QYPVE----------IPGVTNSDFLRAAMNARR-GARGILPE 118

Query: 118 EIAKLQDIIDSKGLWD--LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
            I +L++  +  GL +  LE  V                   SGGEK+R  + +LLL  P
Sbjct: 119 FIKELKEKAELLGLDEEFLERYVNE---------------GFSGGEKKRNEILQLLLLEP 163

Query: 176 DLLLLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHDRYFLDNVT 220
            L +LDEP + LD + +  + +    LRE    VL++TH +  LD + 
Sbjct: 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK 211



 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 24/191 (12%)

Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES--PDSGTIHV-GETVC-LSYVDQ 387
           ++  ++  +  G +  ++GPNG+GK+TL   + G        G I   GE +  LS  ++
Sbjct: 19  ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78

Query: 388 SRDSL----------------EAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGD 431
           +R  +                +  +       G   I+     E+  +A     + +  +
Sbjct: 79  ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138

Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG---CA 488
           +    G  SGG++ R  + ++L     + +LDEP + LD + L  + + +          
Sbjct: 139 RYVNEG-FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGV 197

Query: 489 VIISHDRMFLD 499
           +II+H +  LD
Sbjct: 198 LIITHYQRLLD 208


>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
           transporters homologous to the Drosophila white gene,
           which acts as a dimeric importer for eye pigment
           precursors.  The eye pigmentation of Drosophila is
           developed from the synthesis and deposition in the cells
           of red pigments, which are synthesized from guanine, and
           brown pigments, which are synthesized from tryptophan.
           The pigment precursors are encoded by the white, brown,
           and scarlet genes, respectively.  Evidence from genetic
           and biochemical studies suggest that the White and Brown
           proteins function as heterodimers to import guanine,
           while the White and Scarlet proteins function to import
           tryptophan.  However, a recent study also suggests that
           White may be involved in the transport of a metabolite,
           such as 3-hydroxykynurenine, across intracellular
           membranes.  Mammalian ABC transporters belonging to the
           White subfamily (ABCG1, ABCG5, and ABCG8) have been
           shown to be involved in the regulation of
           lipid-trafficking mechanisms in macrophages,
           hepatocytes, and intestinal mucosa cells.  ABCG1 (ABC8),
           the human homolog of the Drosophila white gene is
           induced in monocyte-derived macrophages during
           cholesterol influx mediated by acetylated low-density
           lipoprotein.  It is possible that human ABCG1 forms
           heterodimers with several heterologous partners..
          Length = 226

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 41/234 (17%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE---------YNGEAWLATG 68
             ++L+D++L       + ILG +G+GK+T+L  ++G  +          +NG+      
Sbjct: 19  YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78

Query: 69  FT--VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
           F   V Y+ Q+  L    TV+E +             Y  ++    + ++    K     
Sbjct: 79  FQKCVAYVRQDDILLPGLTVRETL------------TYTAILRLPRKSSDAIRKKR---- 122

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
                 +      +A+  +     G  +  +SGGE+RRV++   LL  P +L+LDEPT+ 
Sbjct: 123 -----VEDVLLRDLALTRIG----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173

Query: 187 LDAETIAWMEKYLREYSG---AVLMVTHD-RYFLDNVTNWILEVDRGKGIPYQG 236
           LD+ T   +   L + +     V++  H  R  L  + + IL +  G+ I Y G
Sbjct: 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE-IVYSG 226



 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 25/189 (13%)

Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG---DESPDSGTIHVGE--- 378
                  +++++S  +  G ++ ++G +G+GKTTL   ++G        SG I       
Sbjct: 15  NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74

Query: 379 -----TVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433
                  C++YV Q  D L    TV E ++       L     +S A           + 
Sbjct: 75  KPDQFQKCVAYVRQD-DILLPGLTVRETLTY---TAILRLPRKSSDAIRKKRVEDVLLRD 130

Query: 434 --------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485
                     +  +SGG+R RV +A  L     V++LDEPT+ LD+ T   L   L   A
Sbjct: 131 LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA 190

Query: 486 --GCAVIIS 492
                VI++
Sbjct: 191 RRNRIVILT 199


>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
           transporter (Pat) is involved in the import of very
           long-chain fatty acids (VLCFA) into the peroxisome.  The
           peroxisomal membrane forms a permeability barrier for a
           wide variety of metabolites required for and formed
           during fatty acid beta-oxidation.  To communicate with
           the cytoplasm and mitochondria, peroxisomes need
           dedicated proteins to transport such hydrophilic
           molecules across their membranes.  X-linked
           adrenoleukodystrophy (X-ALD) is caused by mutations in
           the ALD gene, which encodes ALDP (adrenoleukodystrophy
           protein ), a peroxisomal integral membrane protein that
           is a member of the ATP-binding cassette (ABC)
           transporter protein family.  The disease is
           characterized by a striking and unpredictable variation
           in phenotypic expression.  Phenotypes include the
           rapidly progressive childhood cerebral form (CCALD), the
           milder adult form, adrenomyeloneuropathy (AMN), and
           variants without neurologic involvement (i.e.
           asymptomatic)..
          Length = 166

 Score = 74.0 bits (182), Expect = 9e-14
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 42/191 (21%)

Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ 387
           + R+L+ +LSF++ PG  + + GP+G GK++LFR L G     SG I + E   L ++ Q
Sbjct: 12  DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71

Query: 388 SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRI----GSLSGGQ 443
                                          R Y      +    +Q I      LSGG+
Sbjct: 72  -------------------------------RPYLPLGTLR----EQLIYPWDDVLSGGE 96

Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVI-ISHDRMFLDRLA 502
           + R+  A++L      + LDE T+ LD E+   L   L+   G  VI + H R  L +  
Sbjct: 97  QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE-LGITVISVGH-RPSLWKFH 154

Query: 503 THILAFEGNGH 513
             +L  +G G 
Sbjct: 155 DRVLDLDGEGG 165



 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216
           LSGGE++R+A  +LLL  P  + LDE T+ LD E+   + + L+E    V+ V H R  L
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGH-RPSL 150

Query: 217 DNVTNWILEVDRGKGI 232
               + +L++D   G 
Sbjct: 151 WKFHDRVLDLDGEGGW 166



 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77
           + +L D++    P  ++ I GP+G GKS++ R +AG+    +G   +  G  + +LPQ 
Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQR 72

Query: 78 PQLDLSKTVKENII 91
          P L L  T++E +I
Sbjct: 73 PYLPLG-TLREQLI 85


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 73.9 bits (181), Expect = 1e-13
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 21/213 (9%)

Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG--------DE 367
            ++E+ G+ +   +R ++ NL+ ++ PG +V V+G +GAGKTTL RM+ G          
Sbjct: 382 DILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKY 441

Query: 368 SPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISG--GDDIVKLNGHEINSRAYCSAF 425
            PDSG + V +    + +    +    E T+ E +    GD    +   EI +RA  S  
Sbjct: 442 RPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV---EILNRAGLSDA 498

Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDAL 481
                  +++   LS GQ+ R  LAK+L    NV+L+DE    LD  T       + +  
Sbjct: 499 VLY----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554

Query: 482 ENFAGCAVIISHDRMFLDRLATHILAFEGNGHV 514
                  ++++H     + L    L   G G V
Sbjct: 555 REAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587



 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 46/209 (22%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
           VL ++NL   P   + ++G +GAGK+T+LR++ G  K    E          Y P   ++
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE---------KYRPDSGKV 448

Query: 81  DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
           ++ K     +I G            E    + E T         I++   L     ++  
Sbjct: 449 EVPKNTVSALIPG------------EYEPEFGEVT---------ILEH--LRSKTGDLNA 485

Query: 141 AIESLHCPADGLN--------ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192
           A+E L+    GL+         + LS G+K R  L KLL   P++LL+DE   HLD  T 
Sbjct: 486 AVEILN--RAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543

Query: 193 AWMEKYL----REYSGAVLMVTHDRYFLD 217
             + + +    RE    +++VTH     +
Sbjct: 544 VRVARKISELAREAGITLIVVTHRPEVGN 572


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
           expressed in the mitochondria.  Although the specific
           function of ATM1 is unknown, its disruption results in
           the accumulation of excess mitochondrial iron, loss of
           mitochondrial cytochromes, oxidative damage to
           mitochondrial DNA, and decreased levels of cytosolic
           heme proteins.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 236

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 44/210 (20%)

Query: 18  SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGID-KEYNGEA 63
            + VL D++ +     K+ I+GP+G+GKSTILR++              G D +E   ++
Sbjct: 13  GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDS 72

Query: 64  WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
                  +G +PQ+  L  + T+  NI            RY     + +++   E AK  
Sbjct: 73  LRRA---IGVVPQDTVL-FNDTIGYNI------------RYGRP--DATDEEVIEAAKAA 114

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
            I D    +    +  V    L           LSGGEK+RVA+ + +L +P +LLLDE 
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLK----------LSGGEKQRVAIARAILKNPPILLLDEA 164

Query: 184 TNHLDAETIAWMEKYLREYSG--AVLMVTH 211
           T+ LD  T   ++  LR+ S     +++ H
Sbjct: 165 TSALDTHTEREIQAALRDVSKGRTTIVIAH 194



 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 26/198 (13%)

Query: 318 IEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
           IE + ++ +Y+  R ++ ++SF +P G  V ++GP+G+GK+T+ R+L       SG+I +
Sbjct: 1   IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60

Query: 377 G----ETVCLSYVDQS-----RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA--- 424
                  V L  + ++     +D++    T+  +I  G    + +  +        A   
Sbjct: 61  DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYG----RPDATDEEVIEAAKAAQI 116

Query: 425 ----FNFKGGDQQ---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
                 F  G      +R   LSGG++ RV +A+ +     ++LLDE T+ LDT T   +
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176

Query: 478 EDALENFAG--CAVIISH 493
           + AL + +     ++I+H
Sbjct: 177 QAALRDVSKGRTTIVIAH 194


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 48/231 (20%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTI----LRIMA---------GIDKEYNGEA 63
               VL +I+ S  P  K+GI+G  G+GKS++     R++          G+D    G  
Sbjct: 15  NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLH 74

Query: 64  WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
            L +  ++  +PQ+P L  S T++ N           LD + E        ++EE+    
Sbjct: 75  DLRSRISI--IPQDPVL-FSGTIRSN-----------LDPFGE-------YSDEEL---W 110

Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
             ++  GL +    +   ++++     G N   LS G+++ + L + LL    +L+LDE 
Sbjct: 111 QALERVGLKEFVESLPGGLDTVVE-EGGEN---LSVGQRQLLCLARALLRKSKILVLDEA 166

Query: 184 TNHLDAETIAWMEKYLREY--SGAVLMVTHDRYFLDNVTNW--ILEVDRGK 230
           T  +D ET A ++K +RE      VL + H    LD + +   IL +D+G+
Sbjct: 167 TASVDPETDALIQKTIREAFKDCTVLTIAHR---LDTIIDSDRILVLDKGR 214



 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 32/201 (15%)

Query: 318 IEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRMLTGDESPDS 371
           IE K +S  Y   L  ++ N+SF + PG  VG++G  G+GK++    LFR++       S
Sbjct: 3   IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58

Query: 372 GTIHVGE----TVCLSYVDQS-----RDSLEAEKTVWEDISGGDDIVKLNGHEINS---- 418
           G+I +       + L  +        +D +    T+  ++   D   + +  E+      
Sbjct: 59  GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115

Query: 419 ---RAYCSAFNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
              + +  +         +  G  LS GQR  + LA+ L     +++LDE T  +D ET 
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175

Query: 475 SALEDAL-ENFAGCAVI-ISH 493
           + ++  + E F  C V+ I+H
Sbjct: 176 ALIQKTIREAFKDCTVLTIAH 196


>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 39/202 (19%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ATGFTVGYL 74
            L+D++L+      + +LGP+G GK+T+L ++AG      G   L        G   G +
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79

Query: 75  PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134
            Q   L     V +N+  G+  +           +  +++ E     L  +    GL   
Sbjct: 80  FQNEALLPWLNVIDNVAFGLQLRG----------IEKAQRREIAHQMLALV----GLEGA 125

Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW 194
           E +                I  LSGG ++RV + + L   P LLLLDEP   LDA T   
Sbjct: 126 EHKY---------------IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170

Query: 195 MEKYL----REYSGAVLMVTHD 212
           M++ L    +E    VL++THD
Sbjct: 171 MQELLLDLWQETGKQVLLITHD 192



 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 320 AKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
              +S SY    R  ++++S  +  G +V V+GP+G GKTTL  ++ G  +P  G+I + 
Sbjct: 6   VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65

Query: 377 GETVCLSYVDQS----RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFK---- 428
           G  +     ++      ++L     V ++++ G   ++L G E   R   +         
Sbjct: 66  GRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQMLALVGL 122

Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
            G + + I  LSGG R RV +A+ L     ++LLDEP   LD  T   +++ L
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 72.7 bits (178), Expect = 3e-13
 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
           ++  +     P   + I GPNG GKS++ RI+ G+   YNG   +     + Y+PQ P +
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYM 556

Query: 81  DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI---AKLQDIIDSKGLWDLETE 137
               T+++ II    +  +      +    Y+++  E I     L+ I+  +G WD    
Sbjct: 557 SGG-TLRDQII----YPDSSEQMKRK---GYTDQDLEAILDIVHLEHILQREGGWDAV-- 606

Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197
                       D  ++  LSGGEK+R+ + ++    P   LLDE T+ +  +    + +
Sbjct: 607 -----------RDWKDV--LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQ 653

Query: 198 YLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYS-AYLQMKAKRMAQENREE 256
             ++   ++L +TH R  L      +LE D       +G +    L  + +   +E ++E
Sbjct: 654 AAKDAGISLLSITH-RPSLWKYHTHLLEFDG------EGGWQFRALNTEERLSIEEEKQE 706

Query: 257 ISRQKA 262
           +  Q A
Sbjct: 707 LESQLA 712



 Score = 57.3 bits (138), Expect = 9e-09
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 30/204 (14%)

Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ 387
              +L+  L+F++ PG  + + GPNG GK++LFR+L G     +G + +     + Y+ Q
Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQ 552

Query: 388 -----------------SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGG 430
                            S + ++ +    +D+    DIV L    I  R        +GG
Sbjct: 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHL--EHILQR--------EGG 602

Query: 431 DQQQRIGS--LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCA 488
               R     LSGG++ R+ +A++        LLDE T+ +  +    +  A ++     
Sbjct: 603 WDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISL 662

Query: 489 VIISHDRMFLDRLATHILAFEGNG 512
           + I+H R  L +  TH+L F+G G
Sbjct: 663 LSITH-RPSLWKYHTHLLEFDGEG 685


>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
           central component of the secretion machinery that
           translocates the toxin, hemolysin A, in a
           Sec-independent fashion across both membranes of E.
           coli.  The hemolysin A (HlyA) transport machinery is
           composed of the ATP-binding cassette (ABC) transporter
           HlyB located in the inner membrane, hemolysin D (HlyD),
           also anchored in the inner membrane, and TolC, which
           resides in the outer membrane.  HlyD apparently forms a
           continuous channel that bridges the entire periplasm,
           interacting with TolC and HlyB.  This arrangement
           prevents the appearance of periplasmic intermediates of
           HlyA during substrate transport.  Little is known about
           the molecular details of HlyA transport, but it is
           evident that ATP-hydrolysis by the ABC-transporter HlyB
           is a necessary source of energy..
          Length = 237

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 54/219 (24%), Positives = 109/219 (49%), Gaps = 24/219 (10%)

Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           I  + +   Y  +  +++DN+S ++ PG +VG++G +G+GK+TL +++     P++G + 
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 376 VGETVCLSYVDQS----------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRA-YCSA 424
           V +   L+  D +          ++++   +++ ++I+  D  + +    +   A    A
Sbjct: 61  V-DGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSM--ERVIEAAKLAGA 117

Query: 425 FNF-----KGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
            +F     +G D    ++   LSGGQR R+ +A+ L     +++ DE T+ LD E+  A+
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177

Query: 478 EDALENF-AGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
              + +  AG  VII   R+   + A  I+  E    VE
Sbjct: 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216



 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 40/184 (21%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AWLAT 67
           +LD+I+L   P   +GI+G +G+GKST+ +++       NG              AWL  
Sbjct: 17  ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76

Query: 68  GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
              VG + QE  L  ++++++NI              +  M   S +   E AKL     
Sbjct: 77  --QVGVVLQENVL-FNRSIRDNIALA-----------DPGM---SMERVIEAAKL----- 114

Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
             G  D  +E+    +++     G     LSGG+++R+A+ + L+ +P +L+ DE T+ L
Sbjct: 115 -AGAHDFISELPEGYDTIV----GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169

Query: 188 DAET 191
           D E+
Sbjct: 170 DYES 173


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 56/227 (24%)

Query: 24  DINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDK------EYNGEAWLATGFTV----- 71
           D N +  P   I  + GP+G+GK++++ ++AG+ +      E NG   +     +     
Sbjct: 16  DANFTL-PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74

Query: 72  ----GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
               GY+ Q+ +L    TV+ N+            RY    M  S +     A+   ++ 
Sbjct: 75  KRRIGYVFQDARLFPHYTVRGNL------------RY---GMWKSMR-----AQFDQLVA 114

Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
             G+  L             P       +LSGGEK+RVA+ + LL++P+LLL+DEP   L
Sbjct: 115 LLGIEHLLDRY---------PG------TLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159

Query: 188 D----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
           D     E + ++E+   E +  +L V+H    +  + + ++ ++ GK
Sbjct: 160 DLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGK 206



 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 50/236 (21%)

Query: 305 IIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364
           + +   +RLG+  ++A                +F LP  GI  + GP+G+GKT+L  M+ 
Sbjct: 2   LELNFRQRLGNFALDA----------------NFTLPARGITALFGPSGSGKTSLINMIA 45

Query: 365 GDESPDSGTIHVGETVCLSYVDQSRD-SLEAEKT----VWEDISGGDDIVKLNGHEINSR 419
           G   PD G I +   V    VD  +   L  EK     V++D        +L  H     
Sbjct: 46  GLTRPDEGRIELNGRV---LVDAEKGIFLPPEKRRIGYVFQD-------ARLFPHYTVRG 95

Query: 420 AYCSAFNFKGGDQ--------------QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465
                       Q               +  G+LSGG++ RV + + L +   ++L+DEP
Sbjct: 96  NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155

Query: 466 TNDLD----TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWF 517
              LD     E L  LE   +      + +SH    + RLA  ++  E NG V+  
Sbjct: 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLE-NGKVKAS 210


>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 213

 Score = 71.1 bits (174), Expect = 6e-13
 Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 46/212 (21%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI---DKEYNGEAWL-------- 65
               +L ++N +      + ++GP+G GKST+L  M G         GE WL        
Sbjct: 13  PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72

Query: 66  -ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
            A    +G L Q+  L    +V +N++  +                 + K          
Sbjct: 73  PAAQRQIGILFQDALLFPHLSVGQNLLFALPA---------------TLKGNARRNAANA 117

Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
            ++  GL            + H         +LSGG++ RVAL + LL+ P  LLLDEP 
Sbjct: 118 ALERSGL----------DGAFHQDPA-----TLSGGQRARVALLRALLAQPKALLLDEPF 162

Query: 185 NHLDA----ETIAWMEKYLREYSGAVLMVTHD 212
           + LD     +   W+   +R      + VTHD
Sbjct: 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194



 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 23/193 (11%)

Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD---SGTIHVG 377
           K +S       L+ N++F +  G IV ++GP+G GK+TL   + G  +     +G + + 
Sbjct: 6   KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65

Query: 378 ETVCLSYVDQSRDS--LEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR 435
           E          R    L  +  ++  +S G +++      +   A  +A N       +R
Sbjct: 66  EQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN----AALER 121

Query: 436 IG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485
            G          +LSGGQR RV L + L +    +LLDEP + LD          + +  
Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181

Query: 486 GCA----VIISHD 494
             A    V ++HD
Sbjct: 182 RAAGIPTVQVTHD 194


>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 256

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 55/250 (22%)

Query: 8   HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-- 65
            +  L K +G  +VL  ++L       I I+G +G+GKST LR +  ++K   G   +  
Sbjct: 8   EVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNG 67

Query: 66  --------ATGFTVGYLPQEPQLDLSK--------------TVKENIIEGVAHKQAILDR 103
                     G       ++ Q   ++              TV EN+IE   H   +   
Sbjct: 68  EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV--- 124

Query: 104 YNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR 163
                        E I + +  +   G+ +              PA       LSGG+++
Sbjct: 125 ----------SKAEAIERAEKYLAKVGIAEKADAY---------PA------HLSGGQQQ 159

Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR---EYSGAVLMVTHDRYFLDNVT 220
           RVA+ + L   P+++L DEPT+ LD E +  + K ++   E    +++VTH+  F  +V+
Sbjct: 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS 219

Query: 221 NWILEVDRGK 230
           + ++ + +GK
Sbjct: 220 SHVIFLHQGK 229



 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 35/229 (15%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
           +E + + K Y +  ++  +S +   G ++ +IG +G+GK+T  R +   E P +G+I V 
Sbjct: 7   LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66

Query: 378 ETVC------------------------LSYVDQSRDSLEAEKTVWED-ISGGDDIVKLN 412
                                       L  V Q  + L +  TV E+ I     ++ ++
Sbjct: 67  GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFN-LWSHMTVLENVIEAPVHVLGVS 125

Query: 413 GHEINSRAYCSAFNFKGGDQQQR---IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469
             E   RA    +  K G  ++       LSGGQ+ RV +A+ L     V+L DEPT+ L
Sbjct: 126 KAEAIERA--EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183

Query: 470 DTETLSALEDALENFAG---CAVIISHDRMFLDRLATHILAFEGNGHVE 515
           D E +  +   +++ A      V+++H+  F   +++H++ F   G +E
Sbjct: 184 DPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI-FLHQGKIE 231


>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
           superfamily (involved in peroxisome organization and
           biogenesis) [Lipid transport and metabolism, General
           function prediction only].
          Length = 659

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 22/210 (10%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG---YLPQE 77
           ++++++L       + I GP+G GK+++LR++ G+     G+    T        +LPQ 
Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509

Query: 78  PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
           P + L  T+++ +I    +     D  ++   +       E  +L  +++ +G  D + +
Sbjct: 510 PYMTLG-TLRDQVI----YPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVD 564

Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197
                           +  LS GE++R+A  +L    P   +LDE T+ +  +    + +
Sbjct: 565 WDW-------------MDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYR 611

Query: 198 YLREYSGAVLMVTHDRYFLDNVTNWILEVD 227
             RE     + V H R  L    +++L +D
Sbjct: 612 KCREMGITFISVGH-RKSLWKFHDYVLRMD 640



 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 39/211 (18%)

Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH---VGETVCLSY 384
           N  LLI+NLS ++P G  + + GP+G GKT+L R+L G      G +     G    L +
Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505

Query: 385 VDQS--------RDSL---EAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433
           + Q         RD +      + +    +  +DI++               N + G   
Sbjct: 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR------------ILENVQLGHLL 553

Query: 434 QRIGS------------LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
           +R G             LS G++ R+  A++        +LDE T+ +  +   AL    
Sbjct: 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC 613

Query: 482 ENFAGCAVIISHDRMFLDRLATHILAFEGNG 512
                  + + H R  L +   ++L  +G G
Sbjct: 614 REMGITFISVGH-RKSLWKFHDYVLRMDGRG 643


>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
           Processing; TAP is essential for peptide delivery from
           the cytosol into the lumen of the endoplasmic reticulum
           (ER), where these peptides are loaded on major
           histocompatibility complex (MHC) I molecules.  Loaded
           MHC I leave the ER and display their antigenic cargo on
           the cell surface to cytotoxic T cells.  Subsequently,
           virus-infected or malignantly transformed cells can be
           eliminated.  TAP belongs to the large family of
           ATP-binding cassette (ABC) transporters, which
           translocate a vast variety of solutes across membranes..
          Length = 226

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 22/201 (10%)

Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ- 387
           D L++ ++SF L PG +  ++GP+G+GK+T+  +L     P  G + +     +S  +  
Sbjct: 26  DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK-PISQYEHK 84

Query: 388 ---------SRDSLEAEKTVWEDISGG-----DDIVKLNGHEINSRAYCSAFNFKGGDQQ 433
                     ++ +   +++ ++I+ G      + VK    + ++ ++ S     G D +
Sbjct: 85  YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELA-SGYDTE 143

Query: 434 --QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE--NFAGCAV 489
             ++   LSGGQ+ RV +A+ L     V++LDE T+ LD E+   ++ AL         +
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203

Query: 490 IISHDRMFLDRLATHILAFEG 510
           +I+H R+     A  IL  +G
Sbjct: 204 VIAH-RLSTVERADQILVLDG 223



 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 38/204 (18%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----ATGFTVGYL-- 74
           VL D++ + +P     ++GP+G+GKST++ ++    +   G+  L     + +   YL  
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88

Query: 75  -----PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129
                 QEP L  ++++++NI  G+       +   E            I++L    D  
Sbjct: 89  KVSLVGQEPVL-FARSLQDNIAYGLQ--SCSFECVKEAAQKAH--AHSFISELASGYD-- 141

Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
                 TEV            G   + LSGG+K+RVA+ + L+ +P +L+LDE T+ LDA
Sbjct: 142 ------TEV------------GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183

Query: 190 ETIAWMEKYLREY--SGAVLMVTH 211
           E+   +++ L ++     VL++ H
Sbjct: 184 ESEQQVQQALYDWPERRTVLVIAH 207


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 44/214 (20%)

Query: 317 VIEAKGISKSYN-----DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371
           +I     +K++      ++  ++ LS ++  G  V VIG NGAGK+TL   + GD  P S
Sbjct: 1   MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60

Query: 372 GTIHVGET-----------VCLSYVDQ-SRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419
           G I +                L+ V Q        E T+ E+++    + +  G     R
Sbjct: 61  GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA----LAESRG---KKR 113

Query: 420 AYCSAFNFKGGDQ----------------QQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463
              SA N +                      RIG LSGGQR  + L         ++LLD
Sbjct: 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173

Query: 464 EPTNDLDTET----LSALEDALENFAGCAVIISH 493
           E T  LD +T    +      +E      ++++H
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207



 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 29/216 (13%)

Query: 11  GLSKVFG-----SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
             +K F       K+ L+ ++L       + ++G NGAGKST+L  +AG  K  +G+  +
Sbjct: 6   NATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILI 65

Query: 66  ATGFTVGYLPQEPQLDLSKTVKENIIEG------VAHKQAILDRYNELMMNYSEKTEEEI 119
             G  V       + +L   V ++ + G      +    A+ +   +     S   E   
Sbjct: 66  D-GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRR 124

Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
           +  ++ +   GL  LE  +               I  LSGG+++ ++L    L  P +LL
Sbjct: 125 SSFRERLARLGL-GLENRL------------SDRIGLLSGGQRQALSLLMATLHPPKILL 171

Query: 180 LDEPTNHLDAETIAWM----EKYLREYSGAVLMVTH 211
           LDE T  LD +T  ++     K + E+    LMVTH
Sbjct: 172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207


>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
           family of ATP-binding cassette (ABC) transporters.  PDR
           is a well-described phenomenon occurring in fungi and
           shares several similarities with processes in bacteria
           and higher eukaryotes.  This PDR subfamily represents
           domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide-binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 202

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 36/164 (21%)

Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD---SGTIHVG-- 377
             K  +   ++ + S  + PG +V V+G  G+G +TL + L      +    G IH    
Sbjct: 13  TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI 72

Query: 378 -----ETVC---LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
                       + YV +  D      TV E +   D  ++  G+E              
Sbjct: 73  PYKEFAEKYPGEIIYVSEE-DVHFPTLTVRETL---DFALRCKGNEF------------- 115

Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
                 +  +SGG+R RV +A+ L S  +V+  D  T  LD+ T
Sbjct: 116 ------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153



 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 43/200 (21%)

Query: 13  SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVG 72
            K      +L D +    P   + +LG  G+G ST+L+ +A   +               
Sbjct: 14  GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS----------- 62

Query: 73  YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
                             +EG  H       YN        K   E    + I  S+   
Sbjct: 63  ------------------VEGDIH-------YN----GIPYKEFAEKYPGEIIYVSEEDV 93

Query: 133 DLET-EVQVAIE-SLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
              T  V+  ++ +L C  +   +  +SGGE++RV++ + L+S   +L  D  T  LD+ 
Sbjct: 94  HFPTLTVRETLDFALRCKGNE-FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152

Query: 191 TIAWMEKYLREYSGAVLMVT 210
           T   + K +R  +  +   T
Sbjct: 153 TALEILKCIRTMADVLKTTT 172


>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
           system; part of the binding-protein-dependent transport
           system tbpA-thiPQ for thiamine and TPP.  Probably
           responsible for the translocation of thiamine across the
           membrane. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 16/196 (8%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR----- 389
           +       G I  ++GP+G+GK+TL  ++ G E+P SG + +   V ++    +      
Sbjct: 16  HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING-VDVTAAPPADRPVSM 74

Query: 390 ----DSLEAEKTVWEDIS-GGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQR 444
               ++L A  TV +++  G    +KL   +  +     A     G +++  G LSGG+R
Sbjct: 75  LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGER 134

Query: 445 GRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHDRMFLDR 500
            RV LA++L     V+LLDEP   LD     E L  + D         ++++H      R
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194

Query: 501 LATHILAFEGNGHVEW 516
           LA  ++ F  NG +  
Sbjct: 195 LAQRVV-FLDNGRIAA 209



 Score = 64.6 bits (157), Expect = 7e-11
 Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 45/227 (19%)

Query: 24  DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP-------- 75
             +L+F       I+GP+G+GKST+L ++AG +   +G   L  G  V   P        
Sbjct: 16  HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPADRPVSM 74

Query: 76  --QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133
             QE  L    TV++N+  G++    +              T E+   ++  +   GL  
Sbjct: 75  LFQENNLFAHLTVEQNVGLGLSPGLKL--------------TAEDRQAIEVALARVGLAG 120

Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----A 189
           LE  +                  LSGGE++RVAL ++L+    +LLLDEP   LD    A
Sbjct: 121 LEKRLP---------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165

Query: 190 ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236
           E +  +     E    VLMVTH       +   ++ +D G+ I  QG
Sbjct: 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR-IAAQG 211


>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
           carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           In members of Carb_Monos family the single hydrophobic
           gene product forms a homodimer, while the ABC protein
           represents a fusion of two nucleotide-binding domains.
           However, it is assumed that two copies of the ABC
           domains are present in the assembled transporter..
          Length = 182

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 52/212 (24%)

Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
           G  V+E +G+S     +  + ++SF++  G IVG+ G  G G+T L   L G   P SG 
Sbjct: 1   GEPVLEVRGLSV----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56

Query: 374 IHV-GETVC-----------LSYV--DQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419
           I + G+ V            ++YV  D+ R+ L  + +V E+I+                
Sbjct: 57  ITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS------------- 103

Query: 420 AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
                              LSGG + +V LA+ L     V++LDEPT  +D    + +  
Sbjct: 104 ------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145

Query: 480 ALENFA--GCAVI-ISHDRMFLDRLATHILAF 508
            +   A  G AV+ IS +   L  L   IL  
Sbjct: 146 LIRELADAGKAVLLISSELDELLGLCDRILVM 177



 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 51/216 (23%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
           K  + D++        +GI G  G G++ +   + G+    +GE  L  G  V       
Sbjct: 13  KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD-GKPVTR----- 66

Query: 79  QLDLSKTVKENIIEGVAHKQAILDRYNE-LMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
                ++ ++ I  G+A+     DR  E L+++ S            + ++         
Sbjct: 67  -----RSPRDAIRAGIAYVPE--DRKREGLVLDLS------------VAEN--------- 98

Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197
             +A+ SL           LSGG +++V L + L   P +L+LDEPT  +D    A + +
Sbjct: 99  --IALSSL-----------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR 145

Query: 198 YLREYS---GAVLMVTHDRYFLDNVTNWILEVDRGK 230
            +RE +    AVL+++ +   L  + + IL +  G+
Sbjct: 146 LIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
           ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score = 64.6 bits (157), Expect = 7e-11
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC---------- 381
           +++ S  +  G I  ++G +G+GK+TL R+L     P  G I V G+ +           
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 382 ----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQQR 435
               +S V QS  +L   +TV E+++ G ++  +   E   RA   A    G  G   + 
Sbjct: 104 RRKKISMVFQSF-ALLPHRTVLENVAFGLEVQGVPKAEREERAL-EALELVGLEGYADKY 161

Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVII 491
              LSGG + RV LA+ L +  +++L+DE  + LD    + ++D L           V I
Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI 221

Query: 492 SHDRMFLD---RLATHILAFEGNGHV 514
           +HD   LD   R+   I A   +G +
Sbjct: 222 THD---LDEALRIGDRI-AIMKDGEI 243



 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 34/203 (16%)

Query: 22  LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81
           ++D +L         I+G +G+GKST++R++  + +   GE  +           E    
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAE---- 99

Query: 82  LSKTVKENIIEGVAHKQAILDRYNEL--------MMNYSEKTEEEIAKLQDIIDSKGLWD 133
             + ++   I  V    A+L     L        +    +   EE A   + ++  GL  
Sbjct: 100 -LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA--LEALELVGLEG 156

Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193
              +                   LSGG ++RV L + L + PD+LL+DE  + LD     
Sbjct: 157 YADKY---------------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201

Query: 194 WMEKYL----REYSGAVLMVTHD 212
            M+  L     +    ++ +THD
Sbjct: 202 EMQDELLELQAKLKKTIVFITHD 224


>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
           the ATP-binding cassette of ABC transporters, but are
           not associated with membrane-spanning domains.  The
           conserved ATP-binding motifs common to Rad50 and the ABC
           transporter family include the Walker A and Walker B
           motifs, the Q loop, a histidine residue in the switch
           region, a D-loop, and a conserved LSGG sequence.  This
           conserved sequence, LSGG, is the most specific and
           characteristic motif of this family and is thus known as
           the ABC signature sequence..
          Length = 204

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 37/215 (17%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR----MLTGDESPDSGT 373
           +  + I +S+++R  I+  S       +  ++G NGAGKTT+       LTG+  P+S  
Sbjct: 4   LSIRNI-RSFHERSEIEFFS------PLTLIVGQNGAGKTTIIEALKYALTGELPPNSKG 56

Query: 374 IHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433
                 +      +  +     K  +E+ +G    +  +   + +  +C       G+  
Sbjct: 57  GAHDPKLI-----REGEVRAQVKLAFENANGKKYTITRSLAILENVIFC-----HQGESN 106

Query: 434 ----QRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLS-ALEDALE 482
                  G  SGG++       R+ LA+   S   ++ LDEPT +LD E +  +L + +E
Sbjct: 107 WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIE 166

Query: 483 NFAGCAV----IISHDRMFLDRLATHILAFEGNGH 513
                      +I+HD   +D  A HI   E +G 
Sbjct: 167 ERKSQKNFQLIVITHDEELVDA-ADHIYRVEKDGR 200



 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 62/225 (27%)

Query: 28  SFYPDAKIG-------ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
           SF+  ++I        I+G NGAGK+TI+            EA        G LP  P  
Sbjct: 11  SFHERSEIEFFSPLTLIVGQNGAGKTTII------------EALKYALT--GELP--PNS 54

Query: 81  DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
                       G AH   ++           E       KL     +   + +   + +
Sbjct: 55  K-----------GGAHDPKLI----------REGEVRAQVKLAFENANGKKYTITRSLAI 93

Query: 141 AIESLHCPADGLN------ITSLSGGEKR------RVALCKLLLSSPDLLLLDEPTNHLD 188
               + C     N          SGGEK       R+AL +   S+  +L LDEPT +LD
Sbjct: 94  LENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153

Query: 189 AETIAW-----MEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDR 228
            E I       +E+   + +  ++++THD   +D   + I  V++
Sbjct: 154 EENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK 197


>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea.  This transport system
           belong to the larger ATP-Binding Cassette (ABC)
           transporter superfamily.  The characteristic feature of
           these transporters is the obligatory coupling of ATP
           hydrolysis to substrate translocation.  ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 269

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 30/218 (13%)

Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357
           ++P  A  ++  GK         + I K     + ++++S  +  G I  ++G +G+GK+
Sbjct: 12  KNPQKAFKLLAKGKS-------KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKS 64

Query: 358 TLFRMLTGDESPDSGTIHV-GETVC--------------LSYVDQSRDSLEAEKTVWEDI 402
           TL R +     P SG + + G+ +               +S V QS  +L   +TV E++
Sbjct: 65  TLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF-ALLPHRTVLENV 123

Query: 403 SGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460
           + G ++  +   E   RA   A    G  G + +    LSGG + RV LA+ L    +++
Sbjct: 124 AFGLEVQGVPRAEREERAA-EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182

Query: 461 LLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494
           L+DE  + LD     E    L           V I+HD
Sbjct: 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220



 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 44/218 (20%)

Query: 12  LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
           + K  G    ++D++L         I+G +G+GKST+LR +  + +  +G+  +      
Sbjct: 30  ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ--- 86

Query: 72  GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS-------------EKTEEE 118
                    D++   ++ + E    K +++ +   L+ + +                 E 
Sbjct: 87  ---------DIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAER 137

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
             +  + ++  GL   E +                   LSGG ++RV L + L   PD+L
Sbjct: 138 EERAAEALELVGLEGWEHKY---------------PDELSGGMQQRVGLARALAVDPDIL 182

Query: 179 LLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
           L+DE  + LD      M+  L     E    ++ +THD
Sbjct: 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 32/222 (14%)

Query: 318 IEAKGISKSYNDRL-------LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
           +    +SK++           ++ N+S  +  G  V + GP+G+GK+TL R L  +  PD
Sbjct: 5   LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64

Query: 371 SGTI---HVGETVCLSYVDQSRDSLEAEKTVWEDIS---------GGDDIV-------KL 411
            G I   H GE V L    + R+ LE  +T    +S            D+V        +
Sbjct: 65  EGQILVRHEGEWVDLVTA-EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123

Query: 412 NGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469
                 ++A    +  N           + SGG++ RV++A+       ++LLDEPT  L
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183

Query: 470 DTETLSALEDALE--NFAGCAVI-ISHDRMFLDRLATHILAF 508
           D    + + + +      G A++ I HD    + +A  +L  
Sbjct: 184 DATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225



 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 38/240 (15%)

Query: 1   MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
           +++ F  H  G  ++     VL +++LS      + + GP+G+GKST+LR +        
Sbjct: 10  VSKTFTLHQQGGVRL----PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65

Query: 61  GEAWLA-TGFTVGYLPQEPQLDLSKTVKENIIEGVAH------KQAILDRYNELMMNYSE 113
           G+  +   G  V  +  EP+  L   V+   I  V+       + + LD   E ++    
Sbjct: 66  GQILVRHEGEWVDLVTAEPREVLE--VRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123

Query: 114 KTEEEIAKLQDIID----SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169
             E   AK  D++      + LW L             PA      + SGGE++RV + +
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLA------------PA------TFSGGEQQRVNIAR 165

Query: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEV 226
             +    +LLLDEPT  LDA   A + + +RE      A++ + HD    + V + +L+V
Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225


>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 50/247 (20%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM----------AGIDKEYNGEAWLA 66
             + +L+ I+ +      + I+G +GAGKSTILR++            ID +   +    
Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333

Query: 67  TGF-TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK-TEEEIAKLQD 124
           +    +G +PQ+  L    T+  NI            +Y        E     E A++ D
Sbjct: 334 SLRRAIGIVPQDTVLFND-TIAYNI------------KYGRPDATAEEVGAAAEAAQIHD 380

Query: 125 IIDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
            I S  +G      +  V    L           LSGGEK+RVA+ + +L +P +L+LDE
Sbjct: 381 FIQSLPEGY-----DTGVGERGL----------KLSGGEKQRVAIARTILKNPPILILDE 425

Query: 183 PTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNW--ILEVDRGKGIPYQGNY 238
            T+ LD  T   ++  LRE S     L++ H    L  + +   I+ +D G+ I  +G +
Sbjct: 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHR---LSTIIDADEIIVLDNGR-IVERGTH 481

Query: 239 SAYLQMK 245
              L   
Sbjct: 482 EELLAAG 488



 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 28/226 (12%)

Query: 302 NAQIIIPVGKRLGHVVIEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360
           +A  + PV  RLG V      +S +Y+  R +++ +SF +P G  V ++G +GAGK+T+ 
Sbjct: 251 DAPPLWPV--RLGAVAFIN--VSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL 306

Query: 361 RMLTGDESPDSGTIHVGETVCLSYVDQS---------RDSLEAEKTVWEDIS-GGDDIVK 410
           R+L      +SG+I +          QS         +D++    T+  +I  G  D   
Sbjct: 307 RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA 366

Query: 411 LNGHEINSRAYCSAFNFKGGD-QQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEP 465
                    A    F     +     +G     LSGG++ RV +A+ +     +++LDE 
Sbjct: 367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426

Query: 466 TNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFE 509
           T+ LDT T  A++ AL   +     ++I+H      RL+T I A E
Sbjct: 427 TSALDTHTEQAIQAALREVSAGRTTLVIAH------RLSTIIDADE 466


>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
           transporter 1).  NFT1 belongs to the MRP (mulrtidrug
           resisitance-associated protein) family of ABC
           transporters.  Some of the MRP members have five
           additional transmembrane segments in their N-terminas,
           but the function of these additional membrane-spanning
           domains is not clear.  The MRP was found in the
           multidrug-resisting lung cancer cell in which
           p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions such as
           glutathione, glucuronate, and sulfate..
          Length = 207

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 64/231 (27%)

Query: 20  KVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGIDKEYNGEAWLA 66
            VL +++       KIGI+G  GAGKST++  +              GID        L 
Sbjct: 22  PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81

Query: 67  TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
           +  T+  +PQ+P L  S T++ N           LD ++E        ++EEI       
Sbjct: 82  SSLTI--IPQDPTL-FSGTIRSN-----------LDPFDEY-------SDEEI------- 113

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
                            +L     GLN   LS G+++ + L + LL  P +L+LDE T  
Sbjct: 114 ---------------YGALRVSEGGLN---LSQGQRQLLCLARALLKRPRVLVLDEATAS 155

Query: 187 LDAETIAWMEKYLRE-YSGAVLMVTHDRYFLDNVTNW--ILEVDRGKGIPY 234
           +D  T A ++K +RE ++ + ++    R  L  + ++  IL +D G+   Y
Sbjct: 156 IDYATDALIQKTIREEFTNSTILTIAHR--LRTIIDYDKILVMDAGEVKEY 204



 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 318 IEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           IE + +S  Y   L  ++ N+SFK+  G  +G++G  GAGK+TL   L      + G I 
Sbjct: 7   IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66

Query: 376 V-GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLN----GHEINSRAYCSAFNFKGG 430
           + G  +    ++  R SL     + +D +     ++ N        +   Y +    +GG
Sbjct: 67  IDGIDISTIPLEDLRSSL---TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGG 123

Query: 431 DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCAV 489
                  +LS GQR  + LA+ L     V++LDE T  +D  T + ++  + E F    +
Sbjct: 124 L------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTI 177

Query: 490 IISHDRM 496
           +    R+
Sbjct: 178 LTIAHRL 184


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI s are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLIs have an N-terminal
           Fe-S domain and two nucleotide binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 255

 Score = 61.0 bits (148), Expect = 8e-10
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%)

Query: 35  IGILGPNGAGKSTILRIMAG-----IDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKEN 89
           +G++GPNG GKST L+I+AG     + K  +   W        +   E Q   +K ++ +
Sbjct: 29  LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDW--DEILDEFRGSELQNYFTKLLEGD 86

Query: 90  IIEGVAHKQAILDRY-NELMMNYSE--KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLH 146
           +   V  K   +D     +     E  K ++E  KL +++D   L  +            
Sbjct: 87  V--KVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR--------- 135

Query: 147 CPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWMEKYLREYS 203
                 NI  LSGGE +RVA+   L    D    DEP+++LD +     A + + L E  
Sbjct: 136 ------NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189

Query: 204 GAVLMVTHDRYFLDNVTNWI 223
             VL+V HD   LD ++++I
Sbjct: 190 NYVLVVEHDLAVLDYLSDYI 209



 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 44/202 (21%)

Query: 338 FKLP---PGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-------------------- 374
            +LP    G ++G++GPNG GK+T  ++L G   P+ G                      
Sbjct: 18  HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77

Query: 375 --------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426
                    V   V   YVD    +++    V E +   D+  KL+              
Sbjct: 78  YFTKLLEGDVKVIVKPQYVDLIPKAVKG--KVGELLKKKDERGKLD-------ELVDQLE 128

Query: 427 FKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE---TLSALEDALEN 483
            +     + I  LSGG+  RV +A  L    +    DEP++ LD +     + L   L  
Sbjct: 129 LR-HVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187

Query: 484 FAGCAVIISHDRMFLDRLATHI 505
                +++ HD   LD L+ +I
Sbjct: 188 DDNYVLVVEHDLAVLDYLSDYI 209


>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
           component [Coenzyme metabolism].
          Length = 248

 Score = 58.9 bits (142), Expect = 4e-09
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 27/180 (15%)

Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG----ETVCLSYVDQSRDS 391
           LS ++  G I+ ++GPNGAGK+TL   + G  +  SG+I       E    + + + R  
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 392 LEAEKT------VWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR-IGSLSGGQR 444
           L  ++T      VW  ++      K     +N      A      D+  R    LSGG+ 
Sbjct: 77  LSQQQTPPFAMPVWHYLTLHQP-DKTRTELLND--VAGALAL--DDKLGRSTNQLSGGEW 131

Query: 445 GRVHLAKI-------LKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVIIS-HD 494
            RV LA +           G ++LLDEP N LD    SAL+  L      G A+++S HD
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191



 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 54/198 (27%)

Query: 35  IGILGPNGAGKSTILRIMAGI-----DKEYNG---EAWLATGFTV--GYLPQEPQLDLSK 84
           + ++GPNGAGKST+L  MAG+       ++ G   EAW AT       YL Q+     + 
Sbjct: 28  LHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM 87

Query: 85  TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIES 144
            V                 Y  L      +TE     L D+  +  L D           
Sbjct: 88  PVWH---------------YLTLHQPDKTRTEL----LNDVAGALALDD----------- 117

Query: 145 LHCPADGLNITSLSGGEKRRVALCKLLLS-SPD------LLLLDEPTNHLDAETIAWMEK 197
                 G +   LSGGE +RV L  ++L  +PD      LLLLDEP N LD    + +++
Sbjct: 118 ----KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173

Query: 198 YLREYSG---AVLMVTHD 212
            L        A++M +HD
Sbjct: 174 LLSALCQQGLAIVMSSHD 191


>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
           (RLI) is a key enzyme in ribosomal biogenesis, formation
           of translation preinitiation complexes, and assembly of
           HIV capsids.  RLI's are not transport proteins, and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains, which
           are arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 177

 Score = 58.5 bits (141), Expect = 4e-09
 Identities = 49/193 (25%), Positives = 70/193 (36%), Gaps = 56/193 (29%)

Query: 323 ISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381
             K Y    LL++    K   G ++G++GPNG GKTT  ++L G   P            
Sbjct: 6   CVKRYGVFFLLVELGVVK--EGEVIGIVGPNGTGKTTAVKILAGQLIP------------ 51

Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSG 441
                        +   W+ I+                 Y          + Q I  LSG
Sbjct: 52  -----------NGDNDEWDGIT---------------PVY----------KPQYI-DLSG 74

Query: 442 GQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA----GCAVIISHDRMF 497
           G+  RV +A  L       L DEP+  LD E       A+   +      A+++ HD   
Sbjct: 75  GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134

Query: 498 LDRLATHILAFEG 510
           LD L+  I  FEG
Sbjct: 135 LDYLSDRIHVFEG 147



 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS----GAVLMVTH 211
            LSGGE +RVA+   LL +    L DEP+ +LD E      + +R  S       L+V H
Sbjct: 71  DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130

Query: 212 DRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKR 248
           D   LD +++ I   +   G P  G Y    Q K  R
Sbjct: 131 DLAVLDYLSDRIHVFE---GEP--GVYGIASQPKGTR 162



 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83
          IGI+GPNG GK+T ++I+AG     NG+     G T  Y PQ   +DLS
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ--YIDLS 73


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 34/190 (17%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG-IDKEYNGEAWLATGFTV---- 71
           G++++L++++ +F P     ++G +GAGK+T+L ++AG     Y     L +GF      
Sbjct: 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQET 861

Query: 72  -----GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
                GY+ Q+       TV+E++    A +                  EE+   ++++I
Sbjct: 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLP-----------KEVSDEEKYEYVEEVI 910

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL-LDEPTN 185
           +   L +    +            GL  + LS  +++R+ +   L+++P  +L LDEPT+
Sbjct: 911 ELLELKEYADALV-----------GLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959

Query: 186 HLDAETIAWM 195
            LD++  A +
Sbjct: 960 GLDSQA-AAI 968



 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 43/224 (19%)

Query: 300 PGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359
                  +    R+     + K          ++ ++S  + PG +  V+GP G+GKTTL
Sbjct: 106 VNILSNPLESILRMLGKRKKKK--------IQILKDISGIIKPGEMTLVLGPPGSGKTTL 157

Query: 360 FRMLTG---DESPDSGTIH--------VGETVCLSYVDQSRDSLEAEKTVWEDI------ 402
            + L G   +    SG I               ++Y  +  D    E TV E +      
Sbjct: 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQ-DVHFPELTVRETLDFAARC 216

Query: 403 ----SGGDDIVKLNGHEINSRAYCSAF------NFKGGDQQQRIGSLSGGQRGRVHLAKI 452
               S  D++ +       +             +   G+   R   +SGG+R RV + ++
Sbjct: 217 KGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVR--GVSGGERKRVSIGEM 274

Query: 453 LKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVIIS 492
           L    +++  DE T  LD+ T    + AL   L +  G   ++S
Sbjct: 275 LVGPASILFWDEITRGLDSSTAFQIIKALRQ-LAHITGATALVS 317



 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 37/200 (18%)

Query: 20  KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE---------YNGEAW--LATG 68
           ++L DI+    P     +LGP G+GK+T+L+ +AG             YNG         
Sbjct: 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPK 188

Query: 69  FTVGYLPQE----PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
            TV Y  ++    P+L    TV+E  ++  A  +    RY+E+      + E+  A    
Sbjct: 189 KTVAYNSEQDVHFPEL----TVRE-TLDFAARCKGPGSRYDEV-----SRREKLAAMTDY 238

Query: 125 IIDSKGL-WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
           ++   GL    +T V   +           +  +SGGE++RV++ ++L+    +L  DE 
Sbjct: 239 LLKILGLDHCADTLVGNDM-----------VRGVSGGERKRVSIGEMLVGPASILFWDEI 287

Query: 184 TNHLDAETIAWMEKYLREYS 203
           T  LD+ T   + K LR+ +
Sbjct: 288 TRGLDSSTAFQIIKALRQLA 307



 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 44/196 (22%)

Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPD---SGTIHVGET- 379
            R L++N+S    PG +  ++G +GAGKTTL  +L      G    D   SG     ET 
Sbjct: 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETF 862

Query: 380 --VCLSYVDQSRDSLEAEKTVWE------------DISGG------DDIVKLNGHEINSR 419
             V   YV+Q       E TV E            ++S        +++++L   +  + 
Sbjct: 863 ARVS-GYVEQQDIHS-PELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD 920

Query: 420 AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLA-KILKSGGNVILLDEPTNDLDTETLSALE 478
           A        G         LS  QR R+ +  +++ +  +++ LDEPT+ LD++  + + 
Sbjct: 921 ALV-GLPGSG---------LSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVM 970

Query: 479 DALENFA--GCAVIIS 492
             L   A  G  ++ +
Sbjct: 971 RFLRKLADTGQTILCT 986


>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits, or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 282

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 32/198 (16%)

Query: 21  VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
           VL +INL       + I G  G+GK+++L ++ G  +   G+  +     + +  Q   +
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK--IKHSGRISFSSQFSWI 109

Query: 81  DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
            +  T+KENII GV++     D Y    +  + + EE+I K             E +  V
Sbjct: 110 -MPGTIKENIIFGVSY-----DEYRYKSVVKACQLEEDITKFP-----------EKDNTV 152

Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200
             E       G+    LSGG++ R++L + +    DL LLD P  +LD  T    EK + 
Sbjct: 153 LGEG------GIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT----EKEIF 199

Query: 201 EYSGAVLMVTHDRYFLDN 218
           E     LM    R  + +
Sbjct: 200 ESCVCKLMANKTRILVTS 217



 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 31/221 (14%)

Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-HVGETVCLSYVDQSRD 390
           ++ N++ K+  G ++ + G  G+GKT+L  ++ G+  P  G I H G    +S+  Q   
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR---ISFSSQF-- 106

Query: 391 SLEAEKTVWEDISGG--------DDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGG 442
           S     T+ E+I  G          +VK    E +   +    N   G+      +LSGG
Sbjct: 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI---TLSGG 163

Query: 443 QRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLA 502
           QR R+ LA+ +    ++ LLD P   LD  T    E  +     C ++ +  R+ +    
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVFT----EKEIFESCVCKLMANKTRILVTSKM 219

Query: 503 TH-------ILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVL 536
            H       ++  EG+    +F G F E +  +   SS+++
Sbjct: 220 EHLKKADKILILHEGSS---YFYGTFSELQSLRPDFSSKLM 257


>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
           Fe-S cluster assembly, ATPase component.  Biosynthesis
           of iron-sulfur clusters (Fe-S) depends on multiprotein
           systems.  The SUF system of E. coli and Erwinia
           chrysanthemi is important for Fe-S biogenesis under
           stressful conditions.  The SUF system is made of six
           proteins: SufC is an atypical cytoplasmic ABC-ATPase,
           which forms a complex with SufB and SufD; SufA plays the
           role of a scaffold protein for assembly of iron-sulfur
           clusters and delivery to target proteins; SufS is a
           cysteine desulfurase which mobilizes the sulfur atom
           from cysteine and provides it to the cluster; SufE has
           no associated function yet..
          Length = 200

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 40/195 (20%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES--PDSGTIH 375
           +E K +  S   + ++  ++  +  G +  ++GPNG+GK+TL + + G        G I 
Sbjct: 1   LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI- 59

Query: 376 VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF-------K 428
                                     +  G+DI  L   E        AF +       K
Sbjct: 60  --------------------------LFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93

Query: 429 GGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG- 486
             D  + +    SGG++ R  + ++L    ++ +LDEP + LD + L  + + +      
Sbjct: 94  NADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153

Query: 487 --CAVIISHDRMFLD 499
               +II+H +  LD
Sbjct: 154 GKSVLIITHYQRLLD 168



 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHDR 213
            SGGEK+R  + +LLL  PDL +LDEP + LD + +  + +    LRE   +VL++TH +
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 214 YFLDNV 219
             LD +
Sbjct: 165 RLLDYI 170



 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54
          G K++L  +NL+        ++GPNG+GKST+ + + G
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48


>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 275

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 49/214 (22%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-----DKEYNGEAWLATGF-- 69
           G   VL++I+ S  P  ++G+LG  G+GKST+L     +     D + +G +W +     
Sbjct: 15  GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQK 74

Query: 70  ---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
                G +PQ+  +  S T ++N           LD Y +        ++EEI K+ +  
Sbjct: 75  WRKAFGVIPQKVFI-FSGTFRKN-----------LDPYGKW-------SDEEIWKVAE-- 113

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNIT------SLSGGEKRRVALCKLLLSSPDLLLL 180
                   E  ++  IE        L+         LS G K+ + L + +LS   +LLL
Sbjct: 114 --------EVGLKSVIEQF---PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162

Query: 181 DEPTNHLDAETIAWMEKYLRE-YSGAVLMVTHDR 213
           DEP+ HLD  T   + K L++ ++   ++++  R
Sbjct: 163 DEPSAHLDPITYQVIRKTLKQAFADCTVILSEHR 196



 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 60/217 (27%)

Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RMLT--GDESP 369
           +  K ++  Y +    +++N+SF + PG  VG++G  G+GK+TL     R+L   GD   
Sbjct: 3   MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQI 62

Query: 370 D--------------------------SGTIHVGETVCLSYVDQSRDSLEAE---KTVWE 400
           D                          SGT          + D+    +  E   K+V E
Sbjct: 63  DGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE 122

Query: 401 DISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460
              G  D V ++G  +                      LS G +  + LA+ + S   ++
Sbjct: 123 QFPGQLDFVLVDGGCV----------------------LSHGHKQLMCLARSVLSKAKIL 160

Query: 461 LLDEPTNDLDTETLSALEDALEN-FAGCAVIISHDRM 496
           LLDEP+  LD  T   +   L+  FA C VI+S  R+
Sbjct: 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI 197


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 51/197 (25%)

Query: 35  IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ----EPQLDLSKTVKENI 90
           I +LG NG GK+T +R++AG  K    E        V Y PQ    + +  + + +   I
Sbjct: 370 IVMLGENGTGKTTFIRMLAGRLKP--DEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKI 427

Query: 91  IEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPAD 150
            +   H Q + D    L +             ++IID         EVQ           
Sbjct: 428 RDAYMHPQFVNDVMKPLQI-------------ENIIDQ--------EVQ----------- 455

Query: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY----SGAV 206
                 LSGGE +RVAL   L    D+ L+DEP+ +LD+E      K ++ +        
Sbjct: 456 -----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA 510

Query: 207 LMVTHD----RYFLDNV 219
            +V HD     Y  D V
Sbjct: 511 FVVEHDFIMATYLADRV 527



 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 28/203 (13%)

Query: 31  PDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--VGYLP-QEPQLDLSKTVK 87
           P   +G++G NG GKST L+I+AG  K   G       +   + Y    E Q   +K ++
Sbjct: 99  PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158

Query: 88  ENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHC 147
           +N+      K  I  +Y + +    + T   +   +D  D+K     + ++   ++    
Sbjct: 159 DNL------KAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDR--- 209

Query: 148 PADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD-------AETIAWMEKYLR 200
                 +  LSGGE +R A+  + +   D+ + DEP+++LD       A TI    + L 
Sbjct: 210 -----EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI----RSLI 260

Query: 201 EYSGAVLMVTHDRYFLDNVTNWI 223
                +++V HD   LD ++++I
Sbjct: 261 NPDRYIIVVEHDLSVLDYLSDFI 283



 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 32/181 (17%)

Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ--------SRDSLEAEK 396
           I+ ++G NG GKTT  RML G   PD G       V  SY  Q        +   L   K
Sbjct: 369 IIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNV--SYKPQKISPKREGTVRQLLHTK 426

Query: 397 T--VWEDISGGDDIVK-LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKIL 453
               +      +D++K L    I                 Q +  LSGG+  RV LA  L
Sbjct: 427 IRDAYMHPQFVNDVMKPLQIENI---------------IDQEVQGLSGGELQRVALALCL 471

Query: 454 KSGGNVILLDEPTNDLDTETLSALEDALENF----AGCAVIISHDRMFLDRLATHILAFE 509
               +V L+DEP+  LD+E        ++ F       A ++ HD +    LA  ++ FE
Sbjct: 472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531

Query: 510 G 510
           G
Sbjct: 532 G 532



 Score = 39.5 bits (92), Expect = 0.002
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 29/202 (14%)

Query: 337 SFKL------PPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV--GETVCLSYVDQS 388
           SFKL       PG ++G++G NG GK+T  ++L G + P+ G           L+Y   S
Sbjct: 88  SFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGS 147

Query: 389 ----------RDSLEAE-KTVWED-----ISGG-DDIVKLNGHEINSRAYCSAFNFKGGD 431
                      D+L+A  K  + D     + G    ++       N    C   +     
Sbjct: 148 ELQNYFTKILEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDL-NNL 206

Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT-ETLSALED--ALENFAGCA 488
             + +  LSGG+  R  +A +     +V + DEP++ LD  + L A     +L N     
Sbjct: 207 LDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYI 266

Query: 489 VIISHDRMFLDRLATHILAFEG 510
           +++ HD   LD L+  I    G
Sbjct: 267 IVVEHDLSVLDYLSDFICCLYG 288


>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
           component/CCR4 associated factor [General function
           prediction only, Transcription].
          Length = 291

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 40/215 (18%)

Query: 318 IEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
           IE  G+   Y   D +  D  +  LP G    ++G NGAGKTTL ++L+G      G + 
Sbjct: 14  IEVSGLQFKYKVSDPIFFD-FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQ 72

Query: 376 VG--------ETVC---LSYV--DQSRDSLEA-EKTVWEDISGGDDIVKLNGHEINSRAY 421
           V                LSY+  + S+    A E  +  DIS    I  + G +   R  
Sbjct: 73  VLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREK 132

Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
               +    D + R+  +S GQR RV +   L     V+LLDE T DLD   + A  D L
Sbjct: 133 L--IDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLD---VLARADLL 187

Query: 482 ENFA------GCAVIISHDRMFLDRLATHILAFEG 510
           E         G  ++           ATHI  F+G
Sbjct: 188 EFLKEECEQRGATIV----------YATHI--FDG 210



 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 44/215 (20%)

Query: 1   MARKFIYHMAGLSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY 59
               F   ++GL   +  S  +  D NL     ++  ++G NGAGK+T+L+I++G     
Sbjct: 8   AVSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSG----- 62

Query: 60  NGEAWLATGFTVGYLPQEPQLDLSKTVKENI--IEGVAHKQAILDRYNELMMNYSEKTEE 117
                +  G  V  L +    D S     ++  + G   K   +     L  + S   E 
Sbjct: 63  ---KHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDIS--AEH 117

Query: 118 EIA-----------KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVA 166
            I            KL DI+D    W +                      +S G++RRV 
Sbjct: 118 MIFGVGGDDPERREKLIDILDIDLRWRMH--------------------KVSDGQRRRVQ 157

Query: 167 LCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE 201
           +C  LL    +LLLDE T  LD    A + ++L+E
Sbjct: 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKE 192


>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
           (PDR) family of ATP-binding cassette (ABC) transporters.
           PDR is a well-described phenomenon occurring in fungi
           and shares several similarities with processes in
           bacteria and higher eukaryotes.  This PDR subfamily
           represents domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 192

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 49/184 (26%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
           G +++L++I+    P     ++G +GAGK+T+L ++AG                      
Sbjct: 18  GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG---------------------- 55

Query: 77  EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136
                  KT    +I G            E+++N     +      Q         D+ +
Sbjct: 56  ------RKTA--GVITG------------EILINGRPLDKN----FQRSTGYVEQQDVHS 91

Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196
                 E+L   A    +  LS  +++R+ +   L + P +L LDEPT+ LD++    + 
Sbjct: 92  PNLTVREALRFSA---LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148

Query: 197 KYLR 200
           ++L+
Sbjct: 149 RFLK 152



 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 44/177 (24%)

Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC------- 381
            R L++N+S  + PG +  ++G +GAGKTTL  +L G +   +G I     +        
Sbjct: 19  KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK--TAGVITGEILINGRPLDKN 76

Query: 382 ----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437
                 YV+Q  D      TV E +                    SA   +G        
Sbjct: 77  FQRSTGYVEQQ-DVHSPNLTVREALR------------------FSA-LLRG-------- 108

Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVIIS 492
            LS  QR R+ +   L +  +++ LDEPT+ LD++    +   L+  A  G A++ +
Sbjct: 109 -LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164


>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 267

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 38/192 (19%)

Query: 317 VIEAKGISKSYNDRL---------LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367
           ++E + +SK++  R           +  +SF L  G  + +IG NG+GK+TL +ML G  
Sbjct: 4   LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63

Query: 368 SPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGG-----------DDIVKLNGHEI 416
            P SG I + +   L + D S  S +  + +++D +             D  ++LN    
Sbjct: 64  EPTSGEILINDHP-LHFGDYSFRS-KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE 121

Query: 417 NSRAYCSAFNFKGGDQQQRIG-----------SLSGGQRGRVHLAKILKSGGNVILLDEP 465
                      +  +  + +G            L+ GQ+ RV LA+ L     +I+ DE 
Sbjct: 122 P-----EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEA 176

Query: 466 TNDLDTETLSAL 477
              LD    S L
Sbjct: 177 LASLDMSMRSQL 188



 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 24/240 (10%)

Query: 1   MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAK--IGILGPNGAGKSTILRIMAGIDKE 58
           +++ F Y       +F  + V     +SF       + I+G NG+GKST+ +++AG+ + 
Sbjct: 10  LSKTFRYRTG----LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65

Query: 59  YNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
            +GE  L     + +     +    + + ++    +  +  I    +  +   ++   E 
Sbjct: 66  TSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE- 123

Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
             + + I         ET   V +   H          L+ G+K+RVAL + L+  P ++
Sbjct: 124 -QRRKQIF--------ETLRMVGLLPDHA---NYYPHMLAPGQKQRVALARALILRPKII 171

Query: 179 LLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
           + DE    LD     + I  M +   +   + + VT     + ++++ +L +  G+ +  
Sbjct: 172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231


>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
           recombination, and repair].
          Length = 908

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 425 FNFKGGDQQQRIGSLSGGQRG------RVHLAKILKSGGNV--ILLDEPTNDLDTETLSA 476
                G + + I +LSGG+R       R+ L+ +L+    +  + LDEP   LD E L  
Sbjct: 802 VVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEK 861

Query: 477 LEDALENFA---GCAVIISHDRMFLDR 500
           L + LE         +IISH     +R
Sbjct: 862 LAEILEELLSDGRQIIIISHVEELKER 888



 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 97  KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS 156
              I    NE++   S    +        I   G   L   V    E          I +
Sbjct: 766 LAQIEAEANEILSKLSLNRYDLRRL---TIRKDGNGGLVVVVYDGGEVRP-------IKT 815

Query: 157 LSGGEKR------RVALCKLLLSSP--DLLLLDEPTNHLDAETIAWMEKYLREY---SGA 205
           LSGGE+       R+AL  LL      +LL LDEP   LD E +  + + L E       
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875

Query: 206 VLMVTHDRYFLD 217
           +++++H     +
Sbjct: 876 IIIISHVEELKE 887



 Score = 30.0 bits (67), Expect = 1.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 342 PGGIVGVIGPNGAGKTTLF 360
             GI  ++GPNGAGK+++ 
Sbjct: 24  DSGIFLIVGPNGAGKSSIL 42



 Score = 28.9 bits (64), Expect = 4.1
 Identities = 11/13 (84%), Positives = 13/13 (100%)

Query: 37 ILGPNGAGKSTIL 49
          I+GPNGAGKS+IL
Sbjct: 30 IVGPNGAGKSSIL 42


>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
           permease components [Secondary metabolites biosynthesis,
           transport, and catabolism / Inorganic ion transport and
           metabolism].
          Length = 546

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 17/210 (8%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLE 393
           NL+ K   G +V +IG NG+GK+TL  +LTG   P SG I + G+ V    ++  R    
Sbjct: 343 NLTIK--RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400

Query: 394 AEKTVWEDISGGDDIVKLNGH--EINSRAYCSAFNFKG----GDQQQRIGSLSGGQRGRV 447
           A   V+ D    D ++   G         +             D +     LS GQ+ R+
Sbjct: 401 A---VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457

Query: 448 HLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAVIISHDRMFLDRLAT 503
            L   L    ++++LDE   D D     E    L   L+        ISHD  +    A 
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HAD 516

Query: 504 HILAFEGNGHVEWFEGNFEEYEKDKLSRSS 533
            +L        E      +E  +D ++R++
Sbjct: 517 RLLEMRNGQLSELTGEERDETARDAVARTA 546



 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 31/208 (14%)

Query: 22  LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81
           +  INL+      + ++G NG+GKST+  ++ G+ +  +GE           L  +P   
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI---------LLDGKPVSA 389

Query: 82  LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVA 141
                   +   V     + D+             E  A  Q I   K L  LE   + +
Sbjct: 390 EQLEDYRKLFSAVFSDYHLFDQLLGP---------EGKASPQLI--EKWLQRLELAHKTS 438

Query: 142 IESLHCPADG-LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK--- 197
           +       DG  +   LS G+K+R+AL   LL   D+L+LDE     D        +   
Sbjct: 439 LN------DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492

Query: 198 -YLREYSGAVLMVTHDRYFLDNVTNWIL 224
             L+E    +  ++HD ++  +    + 
Sbjct: 493 PLLKEQGKTIFAISHDDHYFIHADRLLE 520


>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1.  The sulfonylurea receptor
           SUR is an ATP transporter of the ABCC/MRP family with
           tandem ATPase binding domains.  Unlike other ABC
           proteins, it has no intrinsic transport function,
           neither active nor passive, but associates with the
           potassium channel proteins Kir6.1 or Kir6.2 to form the
           ATP-sensitive potassium (K(ATP)) channel.  Within the
           channel complex, SUR serves as a regulatory subunit that
           fine-tunes the gating of Kir6.x in response to
           alterations in cellular metabolism.  It constitutes a
           major pharmaceutical target as it binds numerous drugs,
           K(ATP) channel openers and blockers, capable of up- or
           down-regulating channel activity..
          Length = 218

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 53/231 (22%)

Query: 22  LDDINLSFYPDAKIGILGPNGAGKSTILRIMAG---------------IDKEYNGEAWLA 66
           L +IN+         I+G  G GKS++L  + G                 +         
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 67  TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
             ++V Y  Q+P L L+ TV+ENI  G    +    RY         K   +   LQ  I
Sbjct: 77  NRYSVAYAAQKPWL-LNATVEENITFGSPFNK---QRY---------KAVTDACSLQPDI 123

Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP--- 183
           D     D +TE+            G+N   LSGG+++R+ + + L  + +++ LD+P   
Sbjct: 124 DLLPFGD-QTEIG---------ERGIN---LSGGQRQRICVARALYQNTNIVFLDDPFSA 170

Query: 184 -----TNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRG 229
                ++HL  E I    K+L++    +++VTH   +L +  +WI+ +  G
Sbjct: 171 LDIHLSDHLMQEGIL---KFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217



 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392
           + N++ ++P G +  ++G  G GK++L   + G+     G +H           ++  S 
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 393 E-------AEK------TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG-------GDQ 432
                   A+K      TV E+I+ G    K        +A   A + +        GDQ
Sbjct: 77  NRYSVAYAAQKPWLLNATVEENITFGSPFNKQR-----YKAVTDACSLQPDIDLLPFGDQ 131

Query: 433 QQ---RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAV 489
            +   R  +LSGGQR R+ +A+ L    N++ LD+P + LD      L D L    G   
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH----LSDHLMQ-EGILK 186

Query: 490 IISHDRMFLDRLATHILAFEGNGHVEW 516
            +  D+  L  L TH L +    H +W
Sbjct: 187 FLQDDKRTL-VLVTHKLQYL--PHADW 210


>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 330

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 24/219 (10%)

Query: 17  GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
           G  K +D ++++       G++G +G+GKS I + + G++K    + W  T   + +   
Sbjct: 18  GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK----DNWRVTADRMRF--- 70

Query: 77  EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW--DL 134
              +DL +       + V H  +++ +  +  ++ SE+   ++ +       KG W    
Sbjct: 71  -DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRF 129

Query: 135 ETEVQVAIESLHCPA--DGLNITS-----LSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
               + AIE LH     D  +I       L+ GE ++V +   L + P LL+ DEPTN +
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189

Query: 188 DAETIAWMEKYL----REYSGAVLMVTHDRYFLDNVTNW 222
           +  T A + + L    +  +  +L+++HD   L  ++ W
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHD---LQMISQW 225



 Score = 28.4 bits (63), Expect = 5.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVIISHD 494
           L+ G+  +V +A  L +   +++ DEPTN ++  T + +   L    +N     ++ISHD
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218

Query: 495 RMFLDRLATHI 505
              + + A  I
Sbjct: 219 LQMISQWADKI 229



 Score = 27.7 bits (61), Expect = 8.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
           +D +S  L  G I G++G +G+GK+ + + + G
Sbjct: 23  VDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG 55


>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
           excision repair in eubacteria is a process that repairs
           DNA damage by the removal of a 12-13-mer oligonucleotide
           containing the lesion.  Recognition and cleavage of the
           damaged DNA is a multistep ATP-dependent reaction that
           requires the UvrA, UvrB, and UvrC proteins.  Both UvrA
           and UvrB are ATPases, with UvrA having two ATP binding
           sites, which have the characteristic signature of the
           family of ABC proteins, and UvrB having one ATP binding
           site that is structurally related to that of helicases..
          Length = 176

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 44/178 (24%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392
           + NL   +P   +V V G +G+GK+TL                       + +       
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTL-------------VNEGLYASGKARLISFLPKF 57

Query: 393 EAEKTVWED-----ISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRV 447
              K ++ D     I  G   + L                      Q++ +LSGG+  RV
Sbjct: 58  SRNKLIFIDQLQFLIDVGLGYLTLG---------------------QKLSTLSGGELQRV 96

Query: 448 HLAKILKSG--GNVILLDEPTNDLDTETLSALEDALENFAGCA---VIISHDRMFLDR 500
            LA  L S   G + +LDEP+  L  + ++ L + ++         ++I H+   L  
Sbjct: 97  KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154



 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 151 GLNITSLSGGEKRRVALCKLLLSSPD--LLLLDEPTNHLDAETIAWME---KYLREYSGA 205
           G  +++LSGGE +RV L   L S P   L +LDEP+  L  + I  +    K L +    
Sbjct: 82  GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141

Query: 206 VLMVTHDRYFLDNVTNWILEVDRGKGI 232
           V+++ H+   L +  +WI++   G G 
Sbjct: 142 VILIEHNLDVLSS-ADWIIDFGPGSGK 167


>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
           implicated in the metabolism of DNA ends. They cleave
           ends sealed by hairpin structures and are thought to
           play a role in removing protein bound to DNA termini..
          Length = 213

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 41/194 (21%)

Query: 339 KLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLE-AEK 396
            L   G+  + GP GAGK+T+          D+ T  + G+T      +  R      E 
Sbjct: 24  GLDNNGLFLICGPTGAGKSTIL---------DAITYALYGKTPRYGRQENLRSVFAPGED 74

Query: 397 TVWEDISGGDDIVKLNGHE--------INSRAYCSAFNFKGGDQQQ----RIGSLSGGQR 444
           T     +      +L G +        ++   +        G+  +     + +LSGG+ 
Sbjct: 75  TAEVSFT-----FQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGET 129

Query: 445 GRVHLA------KILKSGGNVIL----LDEPTNDLDTETLSALEDALENFAG---CAVII 491
               L+      ++L++ G   L    +DE    LD E L A+  ALE          +I
Sbjct: 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189

Query: 492 SHDRMFLDRLATHI 505
           SH     +R+   +
Sbjct: 190 SHVEELKERIPQRL 203



 Score = 29.8 bits (67), Expect = 2.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 14 KVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMA 53
          K FG  +    I+ +   +  +  I GP GAGKSTIL  + 
Sbjct: 9  KNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAIT 49


>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
           cellular processes other than transport.  These families
           are characterised by the fact that the ABC subunit is
           made up of duplicated, fused ABC modules (ABC2).  No
           known transmembrane proteins or domains are associated
           with these proteins..
          Length = 162

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 35/199 (17%), Positives = 52/199 (26%), Gaps = 60/199 (30%)

Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR---MLTGDESPD---SGTIHVGETVCLS 383
                        G +  + GPNG+GK+T+     +  G           +  G  V   
Sbjct: 8   PSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAV 67

Query: 384 YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQ 443
             +                                        F           LSGG+
Sbjct: 68  SAE--------------------------------------LIF-------TRLQLSGGE 82

Query: 444 RGRVHLAKIL----KSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-ISHDRM 496
           +    LA IL         + +LDE    LD     AL +A+      G  VI I+H   
Sbjct: 83  KELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142

Query: 497 FLDRLAT--HILAFEGNGH 513
             +      HI       +
Sbjct: 143 LAELADKLIHIKKVITGVY 161



 Score = 36.1 bits (83), Expect = 0.027
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 154 ITSLSGGEKRRVALCKLL----LSSPDLLLLDEPTNHLD---AETIAWMEKYLREYSGAV 206
              LSGGEK   AL  +L    L    L +LDE    LD    + +A            V
Sbjct: 75  RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134

Query: 207 LMVTHD 212
           +++TH 
Sbjct: 135 IVITHL 140



 Score = 29.9 bits (67), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILR 50
              +++F   +   I GPNG+GKSTIL 
Sbjct: 11 FVPNDVTFGEGSLTIITGPNGSGKSTILD 39


>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
           recombination, and repair].
          Length = 935

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 436 IGSLSGGQRGRVHLAKILKSG--GNVILLDEPTNDL---DTETLSALEDALENFAGCAVI 490
            G+LSGG+  R+ LA  + SG  G + +LDEP+  L   D E L      L +     ++
Sbjct: 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIV 538

Query: 491 ISHDRMFLDRLATHIL-----AFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSG 538
           + HD   + R A HI+     A E  G +   EG  EE   +  S + + LSG
Sbjct: 539 VEHDEDTI-RAADHIIDIGPGAGEHGGEIV-AEGTPEELLANPESLTGQYLSG 589



 Score = 38.2 bits (89), Expect = 0.006
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENF--AGCA 488
           Q   +LSGG+  RV LAK L    +G  + +LDEPT  L  + +  L + L      G  
Sbjct: 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNT 877

Query: 489 VIISHDRMFLDRLATHIL 506
           VI+    + + + A  I+
Sbjct: 878 VIVIEHNLDVIKTADWII 895



 Score = 37.8 bits (88), Expect = 0.008
 Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 61/217 (28%)

Query: 153 NITSLSGGEKRRVALCKLLLSSPD--LLLLDEPTNHL---DAETIAWMEKYLREYSGAVL 207
           +  +LSGGE +R+ L   + S     L +LDEP+  L   D E +    K LR+    V+
Sbjct: 478 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537

Query: 208 MVTHDRYFLDNVTNWILEVDRGKG-----IPYQGNYSAYLQMKAKRMAQENREEISRQKA 262
           +V HD   +    + I+++  G G     I  +G     L        Q     +S +K 
Sbjct: 538 VVEHDEDTI-RAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQ----YLSGKKT 592

Query: 263 IERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKG 322
           IE         PK R++ +   +    EL  +  +                         
Sbjct: 593 IEV--------PKKRRAPNGKWL----ELKGARRNN------------------------ 616

Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359
                     + N+  ++P G    V G +G+GK+TL
Sbjct: 617 ----------LKNIDVEIPLGVFTCVTGVSGSGKSTL 643



 Score = 37.1 bits (86), Expect = 0.012
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 24/130 (18%)

Query: 107 LMMNYSEKTE--EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164
           L M   E  E  E I K+           L+T V V +  +     G   T+LSGGE +R
Sbjct: 782 LDMTVEEALEFFEAIPKIARK--------LQTLVDVGLGYIKL---GQPATTLSGGEAQR 830

Query: 165 VALCKLLLSS---PDLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTHDRYFLDN 218
           V L K L        L +LDEPT  L  + I  + +    L +    V+++ H+   LD 
Sbjct: 831 VKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN---LDV 887

Query: 219 VTN--WILEV 226
           +    WI+++
Sbjct: 888 IKTADWIIDL 897


>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
          Length = 252

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54
             ++L  +NLS        I+GPNG+GKST+ +++AG
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55



 Score = 36.5 bits (85), Expect = 0.017
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
           ++E K +  S N+  ++  L+  +  G I  ++GPNG+GK+TL +++ G
Sbjct: 7   ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55



 Score = 34.6 bits (80), Expect = 0.069
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWMEKYLREYSGAVLMVTHDRY 214
           SGGEK+R  + ++ L   +L +LDE  + LD +    IA     L     +++++TH + 
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212

Query: 215 FLD 217
            LD
Sbjct: 213 LLD 215


>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
            ATPase/SMC superfamily [Replication, recombination and
            repair].
          Length = 1294

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 25/129 (19%)

Query: 396  KTVWEDISGGDDI--VKLNGHEINSRAYCSAFNF-----KGGDQQQRIGSLSGGQRG--- 445
            + +W     G DI  +K+    ++S      +N+     KG  +    G  S GQ+    
Sbjct: 1134 RELWRKTYRGTDIDYIKIRSDSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLAS 1193

Query: 446  ---RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----------ENFAGCAVIIS 492
               R+ LA+   S   V+ LDEPT +LD E + +L  AL           NF    ++I+
Sbjct: 1194 LIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQ--LIVIT 1251

Query: 493  HDRMFLDRL 501
            HD  F+  L
Sbjct: 1252 HDEDFVQLL 1260



 Score = 31.4 bits (71), Expect = 0.70
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 164  RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL--------REYSGAVLMVTHDRYF 215
            R+AL +   S+  +L LDEPT +LD E I  + K L        R+ +  ++++THD  F
Sbjct: 1197 RLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDF 1256

Query: 216  LDNVT 220
            +  + 
Sbjct: 1257 VQLLG 1261


>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
           protein expressed in rat epithelial cells which is
           thought to have an important regulatory role in tight
           junction barrier function.  Barmotin belongs to the SMC
           protein family.  SMC proteins are large (approximately
           110 to 170 kDa), and each is arranged into five
           recognizable domains.  Amino-acid sequence homology of
           SMC proteins between species is largely confined to the
           amino- and carboxy-terminal globular domains. The
           amino-terminal domain contains a 'Walker A'
           nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 197

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 23/187 (12%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL---FRMLTGDESPDSGTI 374
           +E KG  KS+ D+  I    F   P G+  ++GPNG+GK+ +    R + G++S  S   
Sbjct: 4   LELKGF-KSFADKTTIP---F---PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRG 56

Query: 375 HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQ 434
                V  +  +  + +  AE T+  D S G        + I S+   S      G + Q
Sbjct: 57  EKMSDVIFAGSETRKPANFAEVTLTFDNSDG-------RYSIISQGDVSEIIEAPGKKVQ 109

Query: 435 RIGSLSGGQRGRVHLA---KILKSGGNVI-LLDEPTNDLDTETLSALEDALENFAGCA-- 488
           R+  LSGG++    LA    I +   +   +LDE    LD   +      L+ F+     
Sbjct: 110 RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQF 169

Query: 489 VIISHDR 495
           ++I+H +
Sbjct: 170 IVITHRK 176



 Score = 35.8 bits (83), Expect = 0.033
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 153 NITSLSGGEKRRVALCKLLLS------SPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV 206
            ++ LSGGEK   AL  LL +      SP   +LDE    LD   +    + L+E+S   
Sbjct: 110 RLSLLSGGEKALTAL-ALLFAIFRVRPSP-FCVLDEVDAALDDANVERFARLLKEFSKET 167

Query: 207 --LMVTHDR 213
             +++TH +
Sbjct: 168 QFIVITHRK 176



 Score = 31.6 bits (72), Expect = 0.56
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49
          K F  K  +       +P     I+GPNG+GKS I+
Sbjct: 10 KSFADKTTIP------FPPGLTAIVGPNGSGKSNII 39


>gnl|CDD|39108 KOG3905, KOG3905, KOG3905, Dynein light intermediate chain [Cell
           motility].
          Length = 473

 Score = 37.7 bits (87), Expect = 0.008
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392
               KLP G  V V+G NG+GKT+L   L G E+   G+    E + L   D+ RD L
Sbjct: 44  RTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGL--EYLYLHVHDEDRDDL 99


>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 261

 Score = 37.5 bits (87), Expect = 0.011
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 19/117 (16%)

Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL---SSPDLLLLDEPTNHLDAE 190
           L+T   V +  +     G   T+LSGGE +R+ L K L    +   L +LDEPT  L   
Sbjct: 150 LQTLCDVGLGYIKL---GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH 206

Query: 191 TIAWMEKYLR---EYSGAVLMVTHDRYFLDNVTN--WILEV-----DRGKGIPYQGN 237
            +  + + L+   +    V+++ H+   LD +    WI+++     D G  +   G 
Sbjct: 207 DVKKLLEVLQRLVDKGNTVVVIEHN---LDVIKCADWIIDLGPEGGDGGGQVVASGT 260



 Score = 35.9 bits (83), Expect = 0.028
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 434 QRIGSLSGGQRGRVHLAKIL--KSGGNVI-LLDEPTNDLDTETLSALEDALENF--AGCA 488
           Q   +LSGG+  R+ LAK L  +S G  + +LDEPT  L    +  L + L+     G  
Sbjct: 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT 224

Query: 489 VIISHDRMFLDRLATHIL 506
           V++    + + + A  I+
Sbjct: 225 VVVIEHNLDVIKCADWII 242



 Score = 28.2 bits (63), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTL 359
           N+   +P G +  V G +G+GK++L
Sbjct: 13  NIDVDIPLGVLTCVTGVSGSGKSSL 37


>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins,
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 226

 Score = 37.1 bits (86), Expect = 0.011
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 33/201 (16%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTL--------------------FRMLTGD-ESPDSGT 373
           N+   +P   +V + G +G+GK++L                     R   G  + PD  +
Sbjct: 13  NVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS 72

Query: 374 IHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ- 432
           I  G +  ++ +DQ   S     TV   ++   D ++L    +  R         G    
Sbjct: 73  IE-GLSPAIA-IDQKTTSRNPRSTV-GTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL 129

Query: 433 --QQRIGSLSGGQRGRVHLAKILKSG--GNVILLDEPTNDL---DTETLSALEDALENFA 485
              +   +LSGG+  R+ LA  + SG  G + +LDEP+  L   D + L      L +  
Sbjct: 130 TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG 189

Query: 486 GCAVIISHDRMFLDRLATHIL 506
              +++ HD   + R A H++
Sbjct: 190 NTVLVVEHDEDTI-RAADHVI 209



 Score = 35.2 bits (81), Expect = 0.046
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 153 NITSLSGGEKRRVALCKLLLSSPD--LLLLDEPTNHL---DAETIAWMEKYLREYSGAVL 207
           +  +LSGGE +R+ L   + S     L +LDEP+  L   D + +    K LR+    VL
Sbjct: 134 SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193

Query: 208 MVTHDRYFLDNVTNWILEVDRGKGI 232
           +V HD   +    + ++++  G G+
Sbjct: 194 VVEHDEDTIRA-ADHVIDIGPGAGV 217


>gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC).  This
           family consists of several eukaryotic dynein light
           intermediate chain proteins. The light intermediate
           chains (LICs) of cytoplasmic dynein consist of multiple
           isoforms, which undergo post-translational modification
           to produce a large number of species. DLIC1 is known to
           be involved in assembly, organisation, and function of
           centrosomes and mitotic spindles when bound to
           pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
           that may play a role in maintaining Golgi organisation
           by binding cytoplasmic dynein 2 to its Golgi-associated
           cargo.
          Length = 490

 Score = 36.4 bits (84), Expect = 0.021
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG-ETVCLSYVDQSRDSL 392
             KLP G  V V+G +G+GKTTL   L G E P  G    G E + L+  D+ RD  
Sbjct: 39  RSKLPSGKNVLVLGEDGSGKTTLIAKLQGVEHPKKGR---GLEYLYLNVHDEDRDDQ 92


>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 243

 Score = 36.4 bits (84), Expect = 0.023
 Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 49/211 (23%)

Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF---RMLTGDESPDS------GTIH 375
           KSY D+ +I+  S          V+G NG+GK+  F   R +  DE            +H
Sbjct: 10  KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH 64

Query: 376 VG--ETVCLSYV----DQSRDSLEAEKT----------------VWEDISGGDDIVKL-- 411
            G   +V  +YV    D S +    +K                 + +     +D++ L  
Sbjct: 65  EGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE 124

Query: 412 -------NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILK----SGGNVI 460
                  N + I  +   ++      D+QQ +  LSGGQ+  V LA I            
Sbjct: 125 SAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFY 184

Query: 461 LLDEPTNDLDTETLSALEDALENFAGCAVII 491
           L DE    LD +  +A+ + ++  +  A  I
Sbjct: 185 LFDEIDAALDAQYRTAVANMIKELSDGAQFI 215


>gnl|CDD|32383 COG2201, CheB, Chemotaxis response regulator containing a CheY-like
           receiver domain and a methylesterase domain [Cell
           motility and secretion / Signal transduction
           mechanisms].
          Length = 350

 Score = 35.3 bits (81), Expect = 0.048
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 163 RRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNW 222
            R A+ K+    PD++ LD     +D   +  + K +R     V+MV+         T  
Sbjct: 36  GREAIDKVKKLKPDVITLDVEMPVMDG--LEALRKIMRLRPLPVIMVSSLTEEGAEATLE 93

Query: 223 ILE------VDRGKGIPYQG--NYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSP 274
            LE      + +  G    G    +  L  K +  A++NR+ +   +         V   
Sbjct: 94  ALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAARQNRKSLRTPEPPRAPAFRPVKPG 153

Query: 275 KA 276
            A
Sbjct: 154 PA 155


>gnl|CDD|34256 COG4637, COG4637, Predicted ATPase [General function prediction
           only].
          Length = 373

 Score = 35.0 bits (80), Expect = 0.055
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 157 LSGGEKRRVALCKLLLSS--PDLLLLDEPTNHLDAETIAWMEKYLREYS--GAVLMVTHD 212
           LS G  R +AL  LLLS   P LLLLDEP   L  + +  + + +R  +    V++ TH 
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHS 330

Query: 213 RYFLDNV 219
              L+ V
Sbjct: 331 PRLLNAV 337



 Score = 28.0 bits (62), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRML 363
           S  L    +  +IG NGAGK+  +  L
Sbjct: 16  SLDLEIRRVNVIIGANGAGKSNFYDAL 42


>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
           biogenesis [Translation, ribosomal structure and
           biogenesis].
          Length = 1077

 Score = 34.4 bits (78), Expect = 0.080
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 278 QSKSKARIRSYEELVESAAHRHPGNAQII-IPVGKRLGHVVIEAKGISKSYNDRLLIDNL 336
           + K+K      ++L +    +   NA+   +    ++    +    I +      ++D  
Sbjct: 3   EKKAKHSKAEKKKLKKVMDGKVGNNAKAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRT 62

Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRML 363
              LPP  IV V+GP G GK+TL R L
Sbjct: 63  PKDLPPPFIVAVVGPPGTGKSTLIRSL 89


>gnl|CDD|144080 pfam00350, Dynamin_N, Dynamin family. 
          Length = 168

 Score = 34.1 bits (79), Expect = 0.10
 Identities = 34/171 (19%), Positives = 54/171 (31%), Gaps = 36/171 (21%)

Query: 35  IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP--------QLDLSKTV 86
           I ++G   AGKS++L  + G D                 LP+ P         L L +  
Sbjct: 1   IAVVGDQSAGKSSVLNALLGRD----------------ILPRGPGPTTRRPLVLRLGEE- 43

Query: 87  KENIIEGVAHKQAILDRYNELMMNYS-EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145
                 G       ++  + L       +  EEI    D I   G       + + I S 
Sbjct: 44  -----PGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKISGTGKGISSEPIILEILSP 98

Query: 146 HCPADGLNITSLSG---GEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193
             P  GL +    G          L +  +   D++L     NH  + + A
Sbjct: 99  LVP--GLTLVDTPGLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEA 147



 Score = 28.7 bits (65), Expect = 4.5
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC---LSYVDQSRDSLEAEKTVWED 401
           + V+G   AGK+++   L G +    G      T     L   ++      A K  ++D
Sbjct: 1   IAVVGDQSAGKSSVLNALLGRDILPRGPGPT--TRRPLVLRLGEEPGAIPGAVKVEYKD 57


>gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
           [DNA replication, recombination, and repair].
          Length = 363

 Score = 33.3 bits (76), Expect = 0.16
 Identities = 24/107 (22%), Positives = 31/107 (28%), Gaps = 20/107 (18%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTL------------FRMLTGDESPDSGTIHVGETV 380
              L   L PG +  ++G NG GKT L             R      S D   I  G   
Sbjct: 14  YAELDLDLSPG-VNVLVGENGQGKTNLLEAIYLLALGRSHRT-----SRDKELIRTGADE 67

Query: 381 CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA-YCSAFN 426
                   R   E    +      G   V++NG +    A      N
Sbjct: 68  AEISARVQRKGREGTLGLQIS-KKGRRRVRINGTKARKLAELAGHLN 113


>gnl|CDD|133282 cd01882, BMS1, Bms1.  Bms1 is an essential, evolutionarily
           conserved, nucleolar protein.  Its depletion interferes
           with processing of the 35S pre-rRNA at sites A0, A1, and
           A2, and the formation of 40S subunits.  Bms1, the
           putative endonuclease Rc11, and the essential U3 small
           nucleolar RNA form a stable subcomplex that is believed
           to control an early step in the formation of the 40S
           subumit.  The C-terminal domain of Bms1 contains a
           GTPase-activating protein (GAP) that functions
           intramolecularly.  It is believed that Rc11 activates
           Bms1 by acting as a guanine-nucleotide exchange factor
           (GEF) to promote GDP/GTP exchange, and that activated
           (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
          Length = 225

 Score = 33.4 bits (77), Expect = 0.17
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 341 PPGGIVGVIGPNGAGKTTLFRML 363
           PP  +V V+GP G GKTTL + L
Sbjct: 37  PPPLVVAVVGPPGVGKTTLIKSL 59


>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
           function prediction only].
          Length = 219

 Score = 33.4 bits (75), Expect = 0.18
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378
           + V+G  G GKTTL   L GDE P+     +G 
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGN 40



 Score = 31.1 bits (69), Expect = 0.89
 Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 21/117 (17%)

Query: 34  KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93
           KI +LG  G GK+T+L               +   F  GY P    LD +KT++      
Sbjct: 7   KIVVLGDGGVGKTTLLN------------RLVGDEFPEGYPPTIGNLDPAKTIEPYRRNI 54

Query: 94  VAHKQAILD-----RYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145
              K  + D      Y  L   Y       I  + D    +   +L  E    +  L
Sbjct: 55  ---KLQLWDTAGQEEYRSLRPEYYRGA-NGILIVYDSTLRESSDELTEEWLEELREL 107


>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
           [Function unknown].
          Length = 491

 Score = 33.2 bits (75), Expect = 0.19
 Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 17/107 (15%)

Query: 272 SSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGK------RLGHVV--IEAKGI 323
           SS KA    S+   R        A            P         R+      I   GI
Sbjct: 117 SSVKAALVSSRPTSRDKGSCSGGAG---TAATSAGAPNALQELQPPRMKRSTPLIVDNGI 173

Query: 324 SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
                 +LL     F      ++GV+G  G+GK+TL  +L    S D
Sbjct: 174 FNDNARKLLHKTTDFT-----VIGVLGGQGSGKSTLLSLLAA-NSLD 214



 Score = 32.8 bits (74), Expect = 0.26
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 35  IGILGPNGAGKSTILRIMAGIDKEYN 60
           IG+LG  G+GKST+L ++A    +Y+
Sbjct: 191 IGVLGGQGSGKSTLLSLLAANSLDYD 216


>gnl|CDD|133249 cd00066, G-alpha, G protein alpha subunit.  The alpha subunit of G
           proteins contains the guanine nucleotide binding site.
           The heterotrimeric GNP-binding proteins are signal
           transducers that communicate signals from many hormones,
           neurotransmitters, chemokines, and autocrine and
           paracrine factors. Extracellular signals are received by
           receptors, which activate the G proteins, which in turn
           route the signals to several distinct intracellular
           signaling pathways. The alpha subunit of G proteins is a
           weak GTPase. In the resting state, heterotrimeric G
           proteins are associated at the cytosolic face of the
           plasma membrane and the alpha subunit binds to GDP. Upon
           activation by a receptor GDP is replaced with GTP, and
           the G-alpha/GTP complex dissociates from the beta and
           gamma subunits. This results in activation of downstream
           signaling pathways, such as cAMP synthesis by adenylyl
           cyclase, which is terminated when GTP is hydrolized and
           the heterotrimers reconstitute.
          Length = 317

 Score = 32.9 bits (76), Expect = 0.21
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 34  KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93
           K+ +LG   +GKSTIL+ M  +            GF+     +E   +    +  NI++ 
Sbjct: 2   KLLLLGAGESGKSTILKQMKILHG---------DGFS-----EEELREYRPVIYSNILQS 47

Query: 94  VAHKQAILDRYNELMMNYS-EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145
           +   +A+L+    L + +   + E++  K+          +L  E+  AI+ L
Sbjct: 48  M---KALLEAMERLNIPFGDPENEKDAKKILSFAPELEEGELPPELAEAIKEL 97


>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
           only].
          Length = 300

 Score = 33.1 bits (75), Expect = 0.21
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 35  IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTV 86
           +GI GP G+GKST+  ++  +      E          YL    +L L++ V
Sbjct: 53  VGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQV 104


>gnl|CDD|32246 COG2063, FlgH, Flagellar basal body L-ring protein [Cell motility
           and secretion].
          Length = 230

 Score = 33.0 bits (75), Expect = 0.21
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 2/122 (1%)

Query: 339 KLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTV 398
            + PG I         G   LF         D  TI + E    S    +  S +     
Sbjct: 45  PIQPGSIFQGYSLWNYGYQPLFEDRRASNVGDILTIVIQENTSASKSSSTNRSRKNSTGF 104

Query: 399 WEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458
                GG  +   NG + +S    S  +FKG    +R  SL+G     V   ++L +G  
Sbjct: 105 GLTAVGGVLLGGNNGGDDSSYETSSNNDFKGKGGAKRSESLTGTITATVV--QVLPNGNL 162

Query: 459 VI 460
           VI
Sbjct: 163 VI 164


>gnl|CDD|39860 KOG4661, KOG4661, KOG4661, Hsp27-ERE-TATA-binding protein/Scaffold
           attachment factor (SAF-B) [Transcription].
          Length = 940

 Score = 32.8 bits (74), Expect = 0.25
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 227 DRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIR 286
           D+ KG P     ++    K +R   ++R+  SR+K  ER  D      + R+++ + RIR
Sbjct: 572 DKSKGDPVISVKTSQ-DSKERRSKSQDRKSRSREKRRERSFDKRKEERRRREAEERQRIR 630

Query: 287 SYEE 290
              E
Sbjct: 631 EERE 634


>gnl|CDD|144180 pfam00488, MutS_V, MutS domain V.  This domain is found in
          proteins of the MutS family (DNA mismatch repair
          proteins) and is found associated with pfam01624,
          pfam05188, pfam05192 and pfam05190. The mutS family of
          proteins is named after the Salmonella typhimurium MutS
          protein involved in mismatch repair; other members of
          the family included the eukaryotic MSH 1,2,3, 4,5 and 6
          proteins. These have various roles in DNA repair and
          recombination. Human MSH has been implicated in
          non-polyposis colorectal carcinoma (HNPCC) and is a
          mismatch binding protein. The aligned region
          corresponds with domain V of Thermus aquaticus MutS,
          which contains a Walker A motif, and is structurally
          similar to the ATPase domain of ABC transporters.
          Length = 234

 Score = 32.2 bits (74), Expect = 0.43
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%)

Query: 37 ILGPNGAGKSTILR------IMAGI 55
          I GPN  GKST LR      IMA I
Sbjct: 47 ITGPNMGGKSTYLRQVALIVIMAQI 71


>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
           subunit (SR-beta).  SR-beta and SR-alpha form the
           heterodimeric signal recognition particle (SRP or SR)
           receptor that binds SRP to regulate protein
           translocation across the ER membrane.  Nascent
           polypeptide chains are synthesized with an N-terminal
           hydrophobic signal sequence that binds SRP54, a
           component of the SRP.  SRP directs targeting of the
           ribosome-nascent chain complex (RNC) to the ER membrane
           via interaction with the SR, which is localized to the
           ER membrane.  The RNC is then transferred to the
           protein-conducting channel, or translocon, which
           facilitates polypeptide translation across the ER
           membrane or integration into the ER membrane.  SR-beta
           is found only in eukaryotes; it is believed to control
           the release of the signal sequence from SRP54 upon
           binding of the ribosome to the translocon.  High
           expression of SR-beta has been observed in human colon
           cancer, suggesting it may play a role in the development
           of this type of cancer.
          Length = 203

 Score = 31.9 bits (73), Expect = 0.44
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 349 IGPNGAGKTTLFRMLTGDESPDSGT 373
           +GP+ +GKT LF  LT  +   + T
Sbjct: 6   LGPSDSGKTALFTKLTTGKYRSTVT 30


>gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain. 
          Length = 285

 Score = 31.9 bits (73), Expect = 0.48
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDS 391
           LI+ L       G+VG++G  G GKTTL + +  D+S         ++V    V ++   
Sbjct: 8   LIEKLLEMSENLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHF----DSVAWVVVSKTYTE 63

Query: 392 LEAEKTVWEDI-SGGDDIVKLNGHEI 416
              +K + +++     D V+ N  E+
Sbjct: 64  FRLQKDILQELGLDDSDWVEKNESEL 89


>gnl|CDD|35689 KOG0468, KOG0468, KOG0468, U5 snRNP-specific protein [Translation,
           ribosomal structure and biogenesis].
          Length = 971

 Score = 31.9 bits (72), Expect = 0.49
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 290 ELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVI 349
           E +       P    +I PV +      I  + + ++  D   +  L         VG++
Sbjct: 77  ETLVQEEDTQPLREPLIEPVRRL--KFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLV 134

Query: 350 GPNGAGKTTLFRMLTGDESPD 370
           G    GKT L  +L     PD
Sbjct: 135 GHLHHGKTALMDLLVEQTHPD 155


>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
           protein B.  This protein contains a P-loop.
          Length = 122

 Score = 31.6 bits (72), Expect = 0.54
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 345 IVGVIGPNGAGKTTLFRML 363
           IV V+GP  +GKTTL R L
Sbjct: 2   IVLVVGPKDSGKTTLIRKL 20


>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
           the AAA+-type ATPase domain [Posttranslational
           modification, protein turnover, chaperones].
          Length = 953

 Score = 31.5 bits (71), Expect = 0.66
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 12/87 (13%)

Query: 320 AKGISKSYNDRLLIDNLSFKLPPGG-------IVGVIGPNGAGKTTLFRMLTGDESPDSG 372
                       L+  LS +  P G        V + GP G+GKTT+ R +  +      
Sbjct: 401 LSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG---- 456

Query: 373 TIHVGETVCLSYVDQSRDSLEAEKTVW 399
            +H+ E  C   V +S    E +    
Sbjct: 457 -LHLLEVDCYELVAESASHTETKLQAI 482


>gnl|CDD|38089 KOG2878, KOG2878, KOG2878, Predicted kinase [General function
          prediction only].
          Length = 282

 Score = 31.2 bits (70), Expect = 0.68
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 20 KVLDDINLSFYPDAK-----IGILGPNGAGKSTI-LRIMAGIDKEYNGEAWLATGFTVG- 72
          + L      F+ D       IG  GP G+GKST+   +   + K+Y  E   AT  +V  
Sbjct: 14 RFLHKYIPVFFKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSAT-ISVDD 72

Query: 73 -YLPQEPQLDLSKTVKEN 89
           YL  E Q +L K    N
Sbjct: 73 FYLTHEGQAELRKKNPNN 90


>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
           chromosome partitioning].
          Length = 1163

 Score = 31.2 bits (70), Expect = 0.76
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
           IE KG  KS+ D   I+         G   ++GPNG+GK+ +   +
Sbjct: 6   IELKGF-KSFADPTEIN------FSPGFTAIVGPNGSGKSNIVDAI 44



 Score = 31.2 bits (70), Expect = 0.83
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 153  NITSLSGGEKRRVALCKLL-----LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV- 206
            +++ LSGGEK   AL  L        +P   +LDE    LD   +  + + ++E S    
Sbjct: 1063 SLSLLSGGEKSLTALALLFAIQKYRPAP-FYVLDEVDAALDDANVERVARLIKEMSKETQ 1121

Query: 207  -LMVTH 211
             +++TH
Sbjct: 1122 FIVITH 1127


>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
           virulence [General function prediction only].
          Length = 440

 Score = 31.2 bits (70), Expect = 0.79
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359
           S N+     NL           ++GPNG+GKTT+
Sbjct: 7   SLNNFRCFLNLDITFGESETTIIVGPNGSGKTTV 40



 Score = 28.5 bits (63), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 26 NLSFYPDAKIGILGPNGAGKSTILRIM 52
          +++F       I+GPNG+GK+T+L  +
Sbjct: 18 DITFGESETTIIVGPNGSGKTTVLDAI 44


>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains. The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 247

 Score = 30.9 bits (70), Expect = 0.91
 Identities = 45/203 (22%), Positives = 72/203 (35%), Gaps = 57/203 (28%)

Query: 37  ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
           I+GPNG+GKS ++                A  F +G   +   L  SK +K+ +I   A 
Sbjct: 27  IIGPNGSGKSNLMD---------------AISFVLG--EKSSHLR-SKNLKD-LIYR-AR 66

Query: 97  KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV------------------ 138
                     +   Y +   EE    + I      + +  +V                  
Sbjct: 67  VGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVK 126

Query: 139 -------QVAIESLHCPADGL----NITSLSGGEKRRVALCKLLLS------SPDLLLLD 181
                  Q  +ES+           ++ +LSGGEK   AL  LL +      +P   +LD
Sbjct: 127 ARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALA-LLFAIHSYQPAP-FFVLD 184

Query: 182 EPTNHLDAETIAWMEKYLREYSG 204
           E    LD   +  +  Y+RE +G
Sbjct: 185 EVDAALDNTNVGKVASYIREQAG 207



 Score = 28.6 bits (64), Expect = 5.1
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 28/118 (23%)

Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT---------IH 375
           KSY  R +I       P      +IGPNG+GK+ L   ++      S           I+
Sbjct: 10  KSYKGRHVIG------PFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIY 63

Query: 376 VGET---------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
                        V   Y D   +     + +    S      ++NG  ++ + Y   
Sbjct: 64  RARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSS----YRINGKVVSLKEYNEE 117


>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arl9/Arfrp2-like subfamily.  Arl9
           (Arf-like 9) was first identified as part of the Human
           Cancer Genome Project.  It maps to chromosome 4q12 and
           is sometimes referred to as Arfrp2 (Arf-related protein
           2).  This is a novel subfamily identified in human
           cancers that is uncharacterized to date.
          Length = 164

 Score = 30.9 bits (70), Expect = 0.98
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 348 VIGPNGAGKTTLFRMLTGDESPDS 371
           V+G +GAGKT+L   L+ + S +S
Sbjct: 4   VLGLDGAGKTSLLHSLSSERSLES 27


>gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
           replication, recombination, and repair].
          Length = 843

 Score = 30.6 bits (69), Expect = 1.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 9/51 (17%)

Query: 12  LSKVFGSKKVLDDINLSFYPDAKIGIL-GPNGAGKSTILR------IMAGI 55
           +  V  +  V +DI+LS   + +I ++ GPN  GKST LR      I+A I
Sbjct: 588 VEAVLDNGFVPNDIDLS--GNRRIILITGPNMGGKSTYLRQVALIVILAQI 636


>gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are
          large (approximately 110 to 170 kDa), and each is
          arranged into five recognizable domains.  Amino-acid
          sequence homology of SMC proteins between species is
          largely confined to the amino- and carboxy-terminal
          globular domains. The amino-terminal domain contains a
          'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
          the single-letter amino-acid code), which by mutational
          studies has been shown to be essential in several
          proteins.  The carboxy-terminal domain contains a
          sequence (the DA-box) that resembles a 'Walker B'
          motif, and a motif with homology to the signature
          sequence of the ATP-binding cassette (ABC) family of
          ATPases.  The sequence homology within the
          carboxy-terminal domain is relatively high within the
          SMC1-SMC4 group, whereas SMC5 and SMC6 show some
          divergence in both of these sequences.  In eukaryotic
          cells, the proteins are found as heterodimers of SMC1
          paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
          (formerly known as Rad18)..
          Length = 213

 Score = 30.5 bits (69), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 26 NLSFYPDAKIG-ILGPNGAGKSTIL 49
             F P   +  I+GPNG+GKS+I+
Sbjct: 16 ETEFRPGPSLNMIIGPNGSGKSSIV 40


>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
           secretion].
          Length = 407

 Score = 30.7 bits (69), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTT 358
              LI+NL  +     ++ ++GP G GKTT
Sbjct: 191 LLSLIENLIVE--QKRVIALVGPTGVGKTT 218


>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
           metabolism [Inorganic ion transport and metabolism].
          Length = 192

 Score = 30.3 bits (68), Expect = 1.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 339 KLPPGGIVGVIGPNGAGKTTL 359
           +   G ++ V+GP+GAGK TL
Sbjct: 1   RTFMGRLIAVVGPSGAGKDTL 21


>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA mismatch
           repair by recognizing mispaired and unpaired bases
           embedded in duplex DNA and activating endo- and
           exonucleases to remove the mismatch.  Members of the
           MutS family also possess a conserved ATPase activity
           that belongs to the ATP binding cassette (ABC)
           superfamily.  MutS homologs (MSH) have been identified
           in most prokaryotic and all eukaryotic organisms
           examined.  Prokaryotes have two homologs (MutS1 and
           MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
           been identified in eukaryotes.  The homodimer MutS1 and
           heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
           involved in mitotic mismatch repair, whereas MSH4-MSH5
           is involved in resolution of Holliday junctions during
           meiosis.  All members of the MutS family contain the
           highly conserved Walker A/B ATPase domain, and many
           share a common mechanism of action.  MutS1, MSH2-MSH3,
           MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
           clamps, and recognition of specific DNA structures or
           lesions results in ADP/ATP exchange..
          Length = 202

 Score = 30.6 bits (69), Expect = 1.3
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
                   + N    L  G ++ + GPN  GK+T  R +
Sbjct: 12  ALTKGETFVPN-DINLGSGRLLLITGPNMGGKSTYLRSI 49



 Score = 28.6 bits (64), Expect = 4.0
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6  IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA 53
            H   L+   G   V +DINL       + I GPN  GKST LR + 
Sbjct: 5  GRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIG 50


>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
           Translocation is mediated by EF-G (also called
           translocase).  The structure of EF-G closely resembles
           that of the complex between EF-Tu and tRNA.  This is an
           example of molecular mimicry; a protein domain evolved
           so that it mimics the shape of a tRNA molecule.  EF-G in
           the GTP form binds to the ribosome, primarily through
           the interaction of its EF-Tu-like domain with the 50S
           subunit.  The binding of EF-G to the ribosome in this
           manner stimulates the GTPase activity of EF-G.  On GTP
           hydrolysis, EF-G undergoes a conformational change that
           forces its arm deeper into the A site on the 30S
           subunit.  To accommodate this domain, the peptidyl-tRNA
           in the A site moves to the P site, carrying the mRNA and
           the deacylated tRNA with it.  The ribosome may be
           prepared for these rearrangements by the initial binding
           of EF-G as well.  The dissociation of EF-G leaves the
           ribosome ready to accept the next aminoacyl-tRNA into
           the A site.  This group contains only bacterial members.
          Length = 268

 Score = 30.2 bits (69), Expect = 1.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 346 VGVIGPNGAGKTTLFRML 363
           + ++G +G+GKTTL   L
Sbjct: 2   IALVGHSGSGKTTLAEAL 19


>gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
           main terminal branch of the general secretory pathway
           (GSP).  It is responsible for the export the majority of
           Gram-negative bacterial exoenzymes and toxins. PulE is a
           cytoplasmic protein of the GSP, which contains an ATP
           binding site and a tetracysteine motif. This subgroup
           also includes PillB and HofB..
          Length = 264

 Score = 30.2 bits (68), Expect = 1.4
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 342 PGGIVGVIGPNGAGK-TTLFRMLTGDESPDSGTIHVGETV 380
           P GI+ V GP G+GK TTL+  L+   +P+   I V + V
Sbjct: 79  PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV 118


>gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like.  This
           family includes several distinct subfamilies (TrmE/ThdF,
           FeoB, YihA (EngG), Era, and EngA/YfgK) that generally
           show sequence conservation in the region between the
           Walker A and B motifs (G1 and G3 box motifs), to the
           exclusion of other GTPases. TrmE is ubiquitous in
           bacteria and is a widespread mitochondrial protein in
           eukaryotes, but is absent from archaea. The yeast member
           of TrmE family, MSS1, is involved in mitochondrial
           translation; bacterial members are often present in
           translation-related operons.  FeoB represents an unusual
           adaptation of GTPases for high-affinity iron (II)
           transport. YihA (EngB) family of GTPases is typified by
           the E. coli YihA, which is an essential protein involved
           in cell division control.  Era is characterized by a
           distinct derivative of the KH domain (the pseudo-KH
           domain) which is located C-terminal to the GTPase
           domain.  EngA and its orthologs are composed of two
           GTPase domains and, since the sequences of the two
           domains are more similar to each other than to other
           GTPases, it is likely that an ancient gene duplication,
           rather than a fusion of evolutionarily distinct GTPases,
           gave rise to this family.
          Length = 163

 Score = 30.4 bits (69), Expect = 1.5
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 348 VIGPNGAGKTTLFRMLTGDE----SPDSGT 373
           + G   AGK++L   L G E    SP  GT
Sbjct: 1   LFGRTNAGKSSLLNALLGQEVAIVSPVPGT 30


>gnl|CDD|35669 KOG0448, KOG0448, KOG0448, Mitofusin 1 GTPase, involved in
           mitochondrila biogenesis [Posttranslational
           modification, protein turnover, chaperones].
          Length = 749

 Score = 30.0 bits (67), Expect = 1.5
 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWIL 224
              C LL +  D++L+D P   +D+E  +W++ +  +    VL+V  +     +   +  
Sbjct: 198 DDKCSLLRN--DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH 255

Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKAR 284
           +V   K   +  N     +  A     E +E++ +Q       +  V +   +++  +  
Sbjct: 256 KVSEEKPNIFILN----NKWDASASEPECKEDVLKQI-----HELSVVT--EKEAADRVF 304

Query: 285 IRSYEELVESAAHRHPGNAQ 304
             S +E++ +      GN +
Sbjct: 305 FVSAKEVLNARTQNANGNPE 324


>gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like
           superfamily of small GTPases consists of several
           families with an extremely high degree of structural and
           functional similarity. The Ras superfamily is divided
           into at least four families in eukaryotes: the Ras, Rho,
           Rab, and Sar1/Arf families.  This superfamily also
           includes proteins like the GTP translation factors,
           Era-like GTPases, and G-alpha chain of the
           heterotrimeric G proteins.  Members of the Ras
           superfamily regulate a wide variety of cellular
           functions: the Ras family regulates gene expression, the
           Rho family regulates cytoskeletal reorganization and
           gene expression, the Rab and Sar1/Arf families regulate
           vesicle trafficking, and the Ran family regulates
           nucleocytoplasmic transport and microtubule
           organization. The GTP translation factor family regulate
           initiation, elongation, termination, and release in
           translation, and the Era-like GTPase family regulates
           cell division, sporulation, and DNA replication. Members
           of the Ras superfamily are identified by the GTP binding
           site, which is made up of five characteristic sequence
           motifs, and the switch I and switch II regions.
          Length = 157

 Score = 30.1 bits (68), Expect = 1.6
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 348 VIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDD 407
           V+G +G GKT+L   L G E                 ++     +  +  +W D +G + 
Sbjct: 1   VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKV--KLQIW-DTAGQER 57

Query: 408 IVKLNGHEINS 418
              L       
Sbjct: 58  FRSLRRLYYRG 68


>gnl|CDD|35313 KOG0090, KOG0090, KOG0090, Signal recognition particle receptor,
           beta subunit (small G protein superfamily)
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 238

 Score = 29.9 bits (67), Expect = 1.6
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGG 405
           V ++G + +GKT+LF  L       + T                 S+E  +  +   S  
Sbjct: 41  VLLVGLSDSGKTSLFTQLITGSHRGTVT-----------------SIEPNEATYRLGSEN 83

Query: 406 DDIVKLNGHE 415
             +V L GH 
Sbjct: 84  VTLVDLPGHS 93


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 30.1 bits (68), Expect = 1.7
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
           S      +D L   L  G    ++G +G GK+TL   L  D    +G I
Sbjct: 145 SAKTGEGLDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192


>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
          nucleotide-binding domain.  This family includes the
          ATP synthase alpha and beta subunits, the ATP synthase
          associated with flagella and the termination factor
          Rho.
          Length = 213

 Score = 29.7 bits (68), Expect = 2.0
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 34 KIGILGPNGAGKSTIL-RIMAGIDKEYN 60
          +IGI G +G GK+ +L  I      +  
Sbjct: 17 RIGIFGGSGTGKTVLLGMIARNAKADVV 44


>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain is
            found at the N terminus of SMC proteins. The SMC
            (structural maintenance of chromosomes) superfamily
            proteins have ATP-binding domains at the N- and
            C-termini, and two extended coiled-coil domains separated
            by a hinge in the middle. The eukaryotic SMC proteins
            form two kind of heterodimers: the SMC1/SMC3 and the
            SMC2/SMC4 types. These heterodimers constitute an
            essential part of higher order complexes, which are
            involved in chromatin and DNA dynamics. This family also
            includes the RecF and RecN proteins that are involved in
            DNA metabolism and recombination.
          Length = 1162

 Score = 29.6 bits (66), Expect = 2.2
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 153  NITSLSGGEKRRVALCKLLLS------SPDLLLLDEPTNHLDAETIAWMEKYLREYS--G 204
            N+ +LSGGEK  VAL  L+ +      +P   LLDE    LD + ++ +  YL+E S   
Sbjct: 1075 NLDNLSGGEKTLVALA-LIFAIQKYRPAP-FYLLDEIDAALDDQNVSRVANYLKELSKNA 1132

Query: 205  AVLMVTHDRYFLDN 218
              ++++     L+ 
Sbjct: 1133 QFIVISLREEMLEK 1146



 Score = 28.8 bits (64), Expect = 4.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)

Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360
           IE +G  KSY   +++          G   ++GPNG+GK+ + 
Sbjct: 5   IEIEGF-KSYAKTVILP------FSPGFTAIVGPNGSGKSNIL 40


>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2.  The sulfonylurea receptor
           SUR is an ATP binding cassette (ABC) protein of the
           ABCC/MRP family.  Unlike other ABC proteins, it has no
           intrinsic transport function, neither active nor
           passive, but associates with the potassium channel
           proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
           potassium (K(ATP)) channel.  Within the channel complex,
           SUR serves as a regulatory subunit that fine-tunes the
           gating of Kir6.x in response to alterations in cellular
           metabolism.  It constitutes a major pharmaceutical
           target as it binds numerous drugs, K(ATP) channel
           openers and blockers, capable of up- or down-regulating
           channel activity..
          Length = 257

 Score = 29.6 bits (66), Expect = 2.4
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 43/193 (22%)

Query: 19  KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP--- 75
           K VL  +     P  K+GI G  G+GKS++      +   ++G+  +  G  +  LP   
Sbjct: 34  KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLPLHT 92

Query: 76  ---------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
                    Q+P L  S +++ N+       +   DR  E +         EIA+L++++
Sbjct: 93  LRSRLSIILQDPIL-FSGSIRFNLD---PECKCTDDRLWEAL---------EIAQLKNMV 139

Query: 127 DS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
            S   GL  + TE             G N    S G+++   L +  +    +L++DE T
Sbjct: 140 KSLPGGLDAVVTE------------GGEN---FSVGQRQLFCLARAFVRKSSILIMDEAT 184

Query: 185 NHLDAETIAWMEK 197
             +D  T   ++K
Sbjct: 185 ASIDMATENILQK 197


>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 222

 Score = 29.4 bits (66), Expect = 2.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 34 KIGILGPNGAGKSTILRIMA 53
           I I GP G+GKST+ +I+A
Sbjct: 6  IIAIDGPAGSGKSTVAKILA 25


>gnl|CDD|143815 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines a
          number of different Prosite families together.
          Length = 174

 Score = 29.5 bits (67), Expect = 2.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 11/38 (28%)

Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49
          L K+ G  K           + +I ILG + AGK+TIL
Sbjct: 5  LLKLLGLNK-----------EMRILILGLDNAGKTTIL 31


>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
           prediction only].
          Length = 149

 Score = 29.5 bits (66), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 340 LPPGGIVGVIGPNGAGKTTLFR 361
           L  G +V + G  GAGKTTL R
Sbjct: 22  LKAGDVVLLSGDLGAGKTTLVR 43


>gnl|CDD|133279 cd01878, HflX, HflX subfamily.  A distinct conserved domain with a
           glycine-rich segment N-terminal of the GTPase domain
           characterizes the HflX subfamily.  The E. coli HflX has
           been implicated in the control of the lambda cII
           repressor proteolysis, but the actual biological
           functions of these GTPases remain unclear.  HflX is
           widespread, but not universally represented in all three
           superkingdoms.
          Length = 204

 Score = 29.3 bits (67), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 345 IVGVIGPNGAGKTTLFRMLTGDE 367
            V ++G   AGK+TLF  LTG +
Sbjct: 43  TVALVGYTNAGKSTLFNALTGAD 65


>gnl|CDD|37414 KOG2203, KOG2203, KOG2203, GTP-binding protein [General function
          prediction only].
          Length = 772

 Score = 29.2 bits (65), Expect = 3.2
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 7  YHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54
          ++++GL   F     L D  LS+     + ++G   +GKST+L  + G
Sbjct: 16 FNVSGLDY-FQQCVGLRDCGLSY---HVVAVMGSQSSGKSTLLNHLFG 59


>gnl|CDD|30196 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
           also known as uridine kinase or uridine-cytidine kinase
           (UCK), catalyzes the reversible phosphoryl transfer from
           ATP to uridine or cytidine to yield UMP or CMP. In the
           primidine nucleotide-salvage pathway, this enzyme
           combined with nucleoside diphosphate kinases further
           phosphorylates UMP and CMP to form UTP and CTP. This
           kinase also catalyzes the phosphorylation of several
           cytotoxic ribonucleoside analogs such as 5-flurrouridine
           and cyclopentenyl-cytidine..
          Length = 198

 Score = 29.0 bits (65), Expect = 3.3
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS----YVDQSRDSLEAEKTV 398
           I+G+ G +G+GKTT+   +          +   + V +S    Y D S + LE  K  
Sbjct: 1   IIGIAGGSGSGKTTVAEEI-------IEQLGNPKVVIISQDSYYKDLSHEELEERKNN 51


>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
          Length = 218

 Score = 29.1 bits (65), Expect = 3.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 345 IVGVIGPNGAGKTTLFRMLT 364
           I+G+ G +G+GKTT+ + L+
Sbjct: 10  IIGIAGGSGSGKTTVAKELS 29


>gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
           the Benson-Calvin cycle in chloroplasts or
           photosynthetic prokaryotes. This enzyme catalyzes the
           phosphorylation of D-ribulose 5-phosphate to form
           D-ribulose 1, 5-biphosphate, using ATP and NADPH
           produced by the primary reactions of photosynthesis..
          Length = 273

 Score = 29.1 bits (65), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL 382
           I+GV G +G GK+T  R LT     D  T      +CL
Sbjct: 1   IIGVAGDSGCGKSTFLRRLTSLFGSDLVT-----VICL 33


>gnl|CDD|35305 KOG0082, KOG0082, KOG0082, G-protein alpha subunit (small G protein
           superfamily) [Cell cycle control, cell division,
           chromosome partitioning, Signal transduction
           mechanisms].
          Length = 354

 Score = 29.0 bits (65), Expect = 3.7
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 17/88 (19%)

Query: 34  KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93
           K+ +LG   +GKSTI++ M  +            GF+     +E  L+    +  NII+ 
Sbjct: 35  KLLLLGAGESGKSTIVKQMKILHG---------DGFS-----EEELLEYRPVIYSNIIQS 80

Query: 94  VAHKQAILDRYNELMMNYSEKTEEEIAK 121
           +    A+L     L +N  +   E  A+
Sbjct: 81  LK---ALLRAMETLGINLDDPERENDAQ 105


>gnl|CDD|37568 KOG2357, KOG2357, KOG2357, Uncharacterized conserved protein
           [Function unknown].
          Length = 440

 Score = 28.8 bits (64), Expect = 3.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 243 QMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSK 282
             K K  A  + E+  R++A ER+R      PK ++   K
Sbjct: 401 AEKEKLKASGDPEKQRRKEAKERKRQAKKKQPKMKRLAVK 440


>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
           mechanisms].
          Length = 889

 Score = 28.7 bits (64), Expect = 3.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 342 PGGIVGVIGPNGAGKTTLFRML 363
             GIVG+ G  G GKTTL R +
Sbjct: 178 DVGIVGIYGMGGVGKTTLARQI 199


>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
           function prediction only].
          Length = 398

 Score = 28.8 bits (64), Expect = 3.8
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 11/77 (14%)

Query: 23  DDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYL---PQEPQ 79
           +  + S      + ++GP  +GKST+   +A           LA G  V  +     + +
Sbjct: 64  ESKSESAGKVGVVMVVGPVDSGKSTLTTYLA--------NKLLARGRKVAIIDADVGQSE 115

Query: 80  LDLSKTVKENIIEGVAH 96
           +     +     E    
Sbjct: 116 IGPPGFISLAFPESPVI 132



 Score = 28.0 bits (62), Expect = 6.7
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 308 PVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364
               +L  V  +     +   D    ++ S      G+V V+GP  +GK+TL   L 
Sbjct: 40  TTYHQLVEVPEDRSEPLEEIADTW--ESKSESAGKVGVVMVVGPVDSGKSTLTTYLA 94


>gnl|CDD|133296 cd01896, DRG, The developmentally regulated GTP-binding protein
           (DRG) subfamily is an uncharacterized member of the Obg
           family, an evolutionary branch of GTPase superfamily
           proteins.  GTPases act as molecular switches regulating
           diverse cellular processes.  DRG2 and DRG1 comprise the
           DRG subfamily in eukaryotes.  In view of their
           widespread expression in various tissues and high
           conservation among distantly related species in
           eukaryotes and archaea, DRG proteins may regulate
           fundamental cellular processes.  It is proposed that the
           DRG subfamily proteins play their physiological roles
           through RNA binding.
          Length = 233

 Score = 28.6 bits (65), Expect = 3.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDES 368
           V ++G    GK+TL   LT  +S
Sbjct: 3   VALVGFPSVGKSTLLSKLTNTKS 25


>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
           assembly pathway, ATPase PilB [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 500

 Score = 28.8 bits (64), Expect = 4.1
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 342 PGGIVGVIGPNGAGKTT-LFRML 363
           P G++ V GP G+GKTT L+  L
Sbjct: 257 PQGLILVTGPTGSGKTTTLYAAL 279


>gnl|CDD|111395 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain.  This
           domain is found in HypB, a hydrogenase expression /
           formation protein, and UreG a urease accessory protein.
           Both these proteins contain a P-loop nucleotide binding
           motif. HypB has GTPase activity and is a guanine
           nucleotide binding protein. It is not known whether UreG
           binds GTP or some other nucleotide. Both enzymes are
           involved in nickel binding. HypB can store nickel and is
           required for nickel dependent hydrogenase expression.
           UreG is required for functional incorporation of the
           urease nickel metallocenter. GTP hydrolysis may required
           by these proteins for nickel incorporation into other
           nickel proteins. This family of domains also contains
           P47K, a Pseudomonas chlororaphis protein needed for
           nitrile hydratase expression, and the cobW gene product,
           which may be involved in cobalamin biosynthesis in
           Pseudomonas denitrificans.
          Length = 174

 Score = 28.7 bits (65), Expect = 4.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPD 370
           +  + G  G+GKTTL   L  D    
Sbjct: 2   VTVLTGFLGSGKTTLLEHLLRDNREG 27


>gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes.  The
          MutS protein initiates DNA mismatch repair by
          recognizing mispaired and unpaired bases embedded in
          duplex DNA and activating endo- and exonucleases to
          remove the mismatch.  Members of the MutS family
          possess C-terminal domain with a conserved ATPase
          activity that belongs to the ATP binding cassette (ABC)
          superfamily.  MutS homologs (MSH) have been identified
          in most prokaryotic and all eukaryotic organisms
          examined.  Prokaryotes have two homologs (MutS1 and
          MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
          been identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 199

 Score = 28.7 bits (64), Expect = 4.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA 53
          K+V +DI++       I I G N +GKST LR + 
Sbjct: 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIG 46



 Score = 28.7 bits (64), Expect = 4.8
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 309 VGKRLGHVVI-EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
             K LGH +I   K ++   ND          +     + + G N +GK+T  R +
Sbjct: 1   EAKNLGHPLIGREKRVA---ND--------IDMEKKNGILITGSNMSGKSTFLRTI 45


>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
           CHL12/CTF18 [Energy production and conversion,
           Replication, recombination and repair].
          Length = 877

 Score = 28.5 bits (63), Expect = 4.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 18  SKKVLDDIN-LSFYPDAKIGIL-GPNGAGKSTILRIMA 53
            K+VLD     S  P  KI +L GP G GK+T+  ++A
Sbjct: 310 EKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347


>gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
           is a family of proteins highly similar to the uridine
           monophosphate kinase (UMPK, EC 2.7.1.48), also known as
           uridine kinase or uridine-cytidine kinase (UCK)..
          Length = 179

 Score = 28.7 bits (64), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 345 IVGVIGPNGAGKTTLFRML 363
           +VG+ GP+G+GKTT  + L
Sbjct: 1   VVGIAGPSGSGKTTFAKKL 19


>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
           metabolism].
          Length = 191

 Score = 28.6 bits (64), Expect = 4.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 340 LPPGGIVGVIGPNGAGKTTLFRML 363
           +  G ++ + GP+G GK+TL + L
Sbjct: 1   MSKGLLIVLSGPSGVGKSTLVKAL 24


>gnl|CDD|133280 cd01879, FeoB, Ferrous iron transport protein B (FeoB) subfamily.
           E. coli has an iron(II) transport system, known as feo,
           which may make an important contribution to the iron
           supply of the cell under anaerobic conditions.  FeoB has
           been identified as part of this transport system.  FeoB
           is a large 700-800 amino acid integral membrane protein.
           The N terminus contains a P-loop motif suggesting that
           iron transport may be ATP dependent.
          Length = 158

 Score = 28.2 bits (64), Expect = 5.6
 Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 1/15 (6%)

Query: 351 PNGAGKTTLFRMLTG 365
           PN  GKTTLF  LTG
Sbjct: 5   PN-VGKTTLFNALTG 18


>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily.  Rab4 has been implicated in
          numerous functions within the cell.  It helps regulate
          endocytosis through the sorting, recycling, and
          degradation of early endosomes. Mammalian Rab4 is
          involved in the regulation of many surface proteins
          including G-protein-coupled receptors, transferrin
          receptor, integrins, and surfactant protein A.
          Experimental data implicate Rab4 in regulation of the
          recycling of internalized receptors back to the plasma
          membrane.  It is also believed to influence
          receptor-mediated antigen processing in B-lymphocytes,
          in calcium-dependent exocytosis in platelets, in
          alpha-amylase secretion in pancreatic cells, and in
          insulin-induced translocation of Glut4 from internal
          vesicles to the cell surface. Rab4 is known to share
          effector proteins with Rab5 and Rab11.  GTPase
          activating proteins (GAPs) interact with GTP-bound Rab
          and accelerate the hydrolysis of GTP to GDP. Guanine
          nucleotide exchange factors (GEFs) interact with
          GDP-bound Rabs to promote the formation of the
          GTP-bound state.  Rabs are further regulated by guanine
          nucleotide dissociation inhibitors (GDIs), which
          facilitate Rab recycling by masking C-terminal lipid
          binding and promoting cytosolic localization.  Most Rab
          GTPases contain a lipid modification site at the
          C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
          binding is essential for membrane attachment, a key
          feature of most Rab proteins.  Due to the presence of
          truncated sequences in this CD, the lipid modification
          site is not available for annotation.
          Length = 161

 Score = 28.4 bits (64), Expect = 5.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 33 AKIGILGPNGAGKSTILR 50
           K  I+G +G GKS +L 
Sbjct: 1  FKFIIIGSSGTGKSCLLH 18


>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
          reversible phosphorylation of cytidine monophosphate
          (CMP) to produce cytidine diphosphate (CDP), using ATP
          as the preferred phosphoryl donor..
          Length = 147

 Score = 28.2 bits (63), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 34 KIGILGPNGAGKSTILRIMA 53
           I I GP G+GKST+ +++A
Sbjct: 1  IIAIDGPAGSGKSTVAKLLA 20


>gnl|CDD|133298 cd01898, Obg, Obg subfamily.  The Obg nucleotide binding protein
          subfamily has been implicated in stress response,
          chromosome partitioning, replication initiation,
          mycelium development, and sporulation.  Obg proteins
          are among a large group of GTP binding proteins
          conserved from bacteria to humans.  The E. coli
          homolog, ObgE is believed to function in ribosomal
          biogenesis.  Members of the subfamily contain two
          equally and highly conserved domains, a C-terminal GTP
          binding domain and an N-terminal glycine-rich domain.
          Length = 170

 Score = 28.1 bits (64), Expect = 5.9
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%)

Query: 33 AKIGILG-PNGAGKSTILR 50
          A +G++G PN AGKST+L 
Sbjct: 1  ADVGLVGLPN-AGKSTLLS 18


>gnl|CDD|177070 CHL00152, rpl32, ribosomal protein L32; Validated.
          Length = 53

 Score = 28.1 bits (63), Expect = 6.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 274 PKARQSKSKARIR 286
           PK R SKSK RIR
Sbjct: 4   PKKRTSKSKKRIR 16


>gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
          ATPase/type III secretory pathway virulence-related
          protein. This group of ATPases are responsible for the
          export of flagellum and virulence-related proteins. The
          bacterial flagellar motor is similar to the
          F0F1-ATPase, in that they both are proton driven rotary
          molecular devices. However, the main function of the
          bacterial flagellar motor is to rotate the flagellar
          filament for cell motility. Intracellular pathogens
          such as Salmonella and Chlamydia also have proteins
          which are similar to the flagellar-specific ATPase, but
          function in the secretion of virulence-related proteins
          via the type III secretory pathway..
          Length = 326

 Score = 28.3 bits (63), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 34 KIGILGPNGAGKSTILRIMA 53
          ++GI   +G GKST+L ++A
Sbjct: 71 RLGIFAGSGVGKSTLLGMIA 90


>gnl|CDD|37613 KOG2402, KOG2402, KOG2402, Paf1/RNA polymerase II complex, RTF1
           component (involved in regulation of TATA box-binding
           protein) [Transcription].
          Length = 525

 Score = 28.0 bits (62), Expect = 6.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 247 KRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHR 298
           K   + +RE+I+    +ERE      S K ++ + K+ +R  ++L +S   R
Sbjct: 76  KYKDEADREKIALMLELERETILFERSKKQKEKRRKSDVREMQQLSDSRKER 127


>gnl|CDD|30719 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
           transport and metabolism].
          Length = 653

 Score = 28.3 bits (63), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 346 VGVIGPNGAGKTTLFRMLTG 365
           V ++G    GKTTLF  LTG
Sbjct: 6   VALVGNPNVGKTTLFNALTG 25


>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
           function prediction only].
          Length = 398

 Score = 28.1 bits (62), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
            +LL   +        I+ ++GP   GKTTL ++L
Sbjct: 23  RKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLL 57


>gnl|CDD|30828 COG0480, FusA, Translation elongation factors (GTPases)
           [Translation, ribosomal structure and biogenesis].
          Length = 697

 Score = 27.9 bits (62), Expect = 6.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 346 VGVIGPNGAGKTTLF-RML--TGDESPDSGTIHVGETVCLSYVDQSRDSLEAEK 396
           +G++    AGKTTL  R+L  TG  S   G +H G            D +E E+
Sbjct: 13  IGIVAHIDAGKTTLTERILFYTGIISK-IGEVHDGAATM--------DWMEQEQ 57


>gnl|CDD|144191 pfam00503, G-alpha, G-protein alpha subunit.  G proteins couple
           receptors of extracellular signals to intracellular
           signaling pathways. The G protein alpha subunit binds
           guanyl nucleotide and is a weak GTPase.
          Length = 350

 Score = 27.9 bits (63), Expect = 6.5
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 19/114 (16%)

Query: 34  KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEG 93
           K+ +LG   +GKSTIL+ M  I            GF+      E +L+    + +NI++ 
Sbjct: 30  KLLLLGAGESGKSTILKQMKIIHG---------NGFS-----DEEKLEFRPVIYQNILQS 75

Query: 94  VAHKQAILDRYNELMMNY--SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145
           +   + ++D    L + +   E+  +    ++ + +++G   L  E   AI++L
Sbjct: 76  M---RVLVDAMETLGIPFGDPEREADAAMIIETLAETEGEGPLPKEYADAIKAL 126


>gnl|CDD|145523 pfam02421, FeoB_N, Ferrous iron transport protein B.  Escherichia
           coli has an iron(II) transport system (feo) which may
           make an important contribution to the iron supply of the
           cell under anaerobic conditions. FeoB has been
           identified as part of this transport system. FeoB is a
           large 700-800 amino acid integral membrane protein. The
           N terminus contains a P-loop motif suggesting that iron
           transport may be ATP dependent.
          Length = 188

 Score = 28.2 bits (64), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 345 IVGVIG-PNGAGKTTLFRMLTG 365
            + ++G PN  GKTTLF  LTG
Sbjct: 1   TIALVGNPN-VGKTTLFNALTG 21


>gnl|CDD|133255 cd00879, Sar1, Sar1 subfamily.  Sar1 is an essential component of
           COPII vesicle coats involved in export of cargo from the
           ER.  The GTPase activity of Sar1 functions as a
           molecular switch to control protein-protein and
           protein-lipid interactions that direct vesicle budding
           from the ER.  Activation of the GDP to the GTP-bound
           form of Sar1 involves the membrane-associated guanine
           nucleotide exchange factor (GEF) Sec12.  Sar1 is unlike
           all Ras superfamily GTPases that use either myristoyl or
           prenyl groups to direct membrane association and
           function, in that Sar1 lacks such modification.
           Instead, Sar1 contains a unique nine-amino-acid
           N-terminal extension.  This extension contains an
           evolutionarily conserved cluster of bulky hydrophobic
           amino acids, referred to as the Sar1-N-terminal
           activation recruitment (STAR) motif.  The STAR motif
           mediates the recruitment of Sar1 to ER membranes and
           facilitates its interaction with mammalian Sec12 GEF
           leading to activation.
          Length = 190

 Score = 28.0 bits (63), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 349 IGPNGAGKTTLFRMLTGDE 367
           +G + AGKTTL  ML  D 
Sbjct: 25  LGLDNAGKTTLLHMLKDDR 43


>gnl|CDD|30003 cd01393, recA_like, RecA is a  bacterial enzyme which has roles in
           homologous recombination, DNA repair, and the induction
           of the SOS response.  RecA couples ATP hydrolysis to DNA
           strand exchange. While prokaryotes have a single RecA
           protein, eukaryotes have multiple RecA homologs such as
           Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like
           homologs radA and radB..
          Length = 226

 Score = 27.9 bits (62), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 340 LPPGGIVGVIGPNGAGKTTL 359
           +P G I  + G  G+GKT L
Sbjct: 16  IPTGRITEIFGEFGSGKTQL 35


>gnl|CDD|31303 COG1106, COG1106, Predicted ATPases [General function prediction
           only].
          Length = 371

 Score = 28.1 bits (62), Expect = 6.7
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG---ETVCLSYVDQSRDSLEAEKTVW 399
           G I  + G NGAGK+ L   L        G I  G          ++    S   E++  
Sbjct: 22  GKINIIYGANGAGKSNLLEAL----YFLKGLISPGSESPIPFEREINIWNGSYGKEESNL 77

Query: 400 EDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459
           +     D  V++    I+     + FNFK   + +  G  S  +  +V+  +I K   N+
Sbjct: 78  DIFFEQDKEVEI----ISKNTENNKFNFKLQIKFEINGFPSKDESRKVNKIEITKKSKNI 133

Query: 460 ILLDEPTNDLDTETLS 475
               +  N+   ETL 
Sbjct: 134 NDFLKIFNEYFVETLL 149


>gnl|CDD|32443 COG2262, HflX, GTPases [General function prediction only].
          Length = 411

 Score = 27.9 bits (62), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDESP 369
           V ++G   AGK+TLF  LTG +  
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVY 218


>gnl|CDD|133349 cd04149, Arf6, Arf6 subfamily.  Arf6 (ADP ribosylation factor 6)
          proteins localize to the plasma membrane, where they
          perform a wide variety of functions.  In its active,
          GTP-bound form, Arf6 is involved in cell spreading,
          Rac-induced formation of plasma membrane ruffles, cell
          migration, wound healing, and Fc-mediated phagocytosis.
           Arf6 appears to change the actin structure at the
          plasma membrane by activating Rac, a Rho family protein
          involved in membrane ruffling.  Arf6 is required for
          and enhances Rac formation of ruffles.  Arf6 can
          regulate dendritic branching in hippocampal neurons,
          and in yeast it localizes to the growing bud, where it
          plays a role in polarized growth and bud site
          selection.  In leukocytes, Arf6 is required for
          chemokine-stimulated migration across endothelial
          cells.  Arf6 also plays a role in down-regulation of
          beta2-adrenergic receptors and luteinizing hormone
          receptors by facilitating the release of sequestered
          arrestin to allow endocytosis.  Arf6 is believed to
          function at multiple sites on the plasma membrane
          through interaction with a specific set of GEFs, GAPs,
          and effectors.  Arf6 has been implicated in breast
          cancer and melanoma cell invasion, and in actin
          remodelling at the invasion site of Chlamydia
          infection.
          Length = 168

 Score = 27.8 bits (62), Expect = 7.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 12/38 (31%)

Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49
          LSK+FG+K++            +I +LG + AGK+TIL
Sbjct: 1  LSKLFGNKEM------------RILMLGLDAAGKTTIL 26


>gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily.  Snu114p is one of several
           proteins that make up the U5 small nuclear
           ribonucleoprotein (snRNP) particle.  U5 is a component
           of the spliceosome, which catalyzes the splicing of
           pre-mRNA to remove introns.  Snu114p is homologous to
           EF-2, but typically contains an additional N-terminal
           domain not found in Ef-2.  This protein is part of the
           GTP translation factor family and the Ras superfamily,
           characterized by five G-box motifs.
          Length = 213

 Score = 28.0 bits (63), Expect = 7.4
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLE 393
           V + G    GKT+L  ML       + +   G      Y D  +D  E
Sbjct: 3   VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPL-RYTDIRKDEQE 49


>gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the
           peptidase M41 domain [Posttranslational modification,
           protein turnover, chaperones].
          Length = 752

 Score = 27.7 bits (61), Expect = 7.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD 366
            L  KLP G  V ++GP G GKT L R + G+
Sbjct: 331 RLGGKLPKG--VLLVGPPGTGKTLLARAVAGE 360


>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.  This
           uncharacterized family contains a P-loop.
          Length = 123

 Score = 28.0 bits (63), Expect = 7.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 340 LPPGGIVGVIGPNGAGKTTLFR 361
           L  G +V + G  GAGKTT  R
Sbjct: 12  LKAGDVVLLSGDLGAGKTTFVR 33


>gnl|CDD|36182 KOG0964, KOG0964, KOG0964, Structural maintenance of chromosome
            protein 3 (sister chromatid cohesion complex Cohesin,
            subunit SMC3) [Cell cycle control, cell division,
            chromosome partitioning].
          Length = 1200

 Score = 27.6 bits (61), Expect = 7.7
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 84   KTVKENIIEGVAHKQAILDRYNELMM----NYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139
            K VK+N  E     + +      ++M    N ++  E++     +  + K   ++ T + 
Sbjct: 1023 KQVKKNFSE--VFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGIS 1080

Query: 140  VAIESLHCPADGLNITSLSGGEKRRVALCKLL----LSSPDLLLLDEPTNHLDAE 190
            + +       + L +  LSGG+K  VAL  +            L DE    LDA+
Sbjct: 1081 IKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQ 1135


>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
           also known as guanylate kinase (GKase), catalyzes the
           reversible phosphoryl transfer from adenosine
           triphosphate (ATP) to guanosine monophosphate (GMP) to
           yield adenosine diphosphate (ADP) and guanosine
           diphosphate (GDP). It plays an essential role in the
           biosynthesis of guanosine triphosphate (GTP). This
           enzyme is also important for the activation of some
           antiviral and anticancer agents, such as acyclovir,
           ganciclovir, carbovir, and thiopurines..
          Length = 137

 Score = 27.8 bits (62), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPD 370
           ++ + GP+G GK+TL + L  +  P+
Sbjct: 1   LIVLSGPSGVGKSTLLKRLLEEFDPN 26


>gnl|CDD|177020 CHL00081, chlI, Mg-protoporyphyrin IX chelatase.
          Length = 350

 Score = 27.6 bits (62), Expect = 7.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 32 DAKIG---ILGPNGAGKSTILRIMA 53
          D KIG   I+G  G GKST +R + 
Sbjct: 35 DPKIGGVMIMGDRGTGKSTTIRALV 59


>gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation,
           ribosomal structure and biogenesis].
          Length = 531

 Score = 27.6 bits (61), Expect = 8.0
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 18/57 (31%)

Query: 346 VGVIGPNGAGKTTLFRMLTGDE----SPDSGTIHVGETVCLSYVDQSRDSLEAEKTV 398
           + ++G    GK++L   L+ ++    SP  GT              +RD++EA+ TV
Sbjct: 271 IAIVGRPNVGKSSLLNALSREDRSIVSPVPGT--------------TRDAIEAQVTV 313


>gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 758

 Score = 27.7 bits (61), Expect = 8.5
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 24/129 (18%)

Query: 157 LSGGEKRRVALCKL---LLSSPD-----LLLLDEPTNHLDAETIAWMEKYLREYSG---A 205
           LS GEK  +A       L  +PD     ++++D+P +  D+  +  +   ++E       
Sbjct: 530 LSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQ 589

Query: 206 VLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIER 265
           V+++TH+ YF     +  LE+D  +    +G YS ++  K           +S+ K  + 
Sbjct: 590 VIVLTHNTYF---YRDITLELDLKR--YNKGKYSFWIIKKDN--------NVSKIKVYKA 636

Query: 266 ERDWIVSSP 274
           + D I +SP
Sbjct: 637 DEDPIKNSP 645


>gnl|CDD|35297 KOG0074, KOG0074, KOG0074, GTP-binding ADP-ribosylation
          factor-like protein ARL3 [General function prediction
          only].
          Length = 185

 Score = 27.7 bits (61), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 34 KIGILGPNGAGKSTILRIMAGID 56
          +I +LG + AGK+T L+ +   D
Sbjct: 19 RILLLGLDNAGKTTFLKQLKSED 41


>gnl|CDD|73045 cd03286, ABC_MSH6_euk, MutS6 homolog in eukaryotes.  The MutS
          protein initiates DNA mismatch repair by recognizing
          mispaired and unpaired bases embedded in duplex DNA and
          activating endo- and exonucleases to remove the
          mismatch.  Members of the MutS family possess
          C-terminal domain with a conserved ATPase activity that
          belongs to the ATP binding cassette (ABC) superfamily. 
          MutS homologs (MSH) have been identified in most
          prokaryotic and all eukaryotic organisms examined.
          Prokaryotes have two homologs (MutS1 and MutS2),
          whereas seven MSH proteins (MSH1 to MSH7) have been
          identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 218

 Score = 27.6 bits (61), Expect = 8.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------IMAGI 55
           S  V +D++L       + + GPN  GKST+LR      IMA +
Sbjct: 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM 59


>gnl|CDD|133300 cd01900, YchF, YchF subfamily.  YchF is a member of the Obg family,
           which includes four other subfamilies of GTPases: Obg,
           DRG, Ygr210, and NOG1.  Obg is an essential gene that is
           involved in DNA replication in C. crescentus and
           Streptomyces griseus and is associated with the
           ribosome.  Several members of the family, including
           YchF, possess the TGS domain related to the RNA-binding
           proteins.  Experimental data and genomic analysis
           suggest that YchF may be part of a nucleoprotein complex
           and may function as a GTP-dependent translational
           factor.
          Length = 274

 Score = 27.8 bits (63), Expect = 8.8
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%)

Query: 344 GIVGVIGPNGAGKTTLFRMLT 364
           GIVG+  PN  GK+TLF  LT
Sbjct: 2   GIVGL--PN-VGKSTLFNALT 19


>gnl|CDD|143922 pfam00154, RecA, recA bacterial DNA recombination protein.  RecA is
           a DNA-dependent ATPase and functions in DNA repair
           systems. RecA protein catalyses an ATP-dependent DNA
           strand-exchange reaction that is the central step in the
           repair of dsDNA breaks by homologous recombination.
          Length = 322

 Score = 27.6 bits (62), Expect = 8.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 340 LPPGGIVGVIGPNGAGKTTL 359
           LP G I+ + GP  +GKTTL
Sbjct: 49  LPKGRIIEIYGPESSGKTTL 68


>gnl|CDD|73043 cd03284, ABC_MutS1, MutS1 homolog in eukaryotes.  The MutS
          protein initiates DNA mismatch repair by recognizing
          mispaired and unpaired bases embedded in duplex DNA and
          activating endo- and exonucleases to remove the
          mismatch.  Members of the MutS family possess
          C-terminal domain with a conserved ATPase activity that
          belongs to the ATP binding cassette (ABC) superfamily. 
          MutS homologs (MSH) have been identified in most
          prokaryotic and all eukaryotic organisms examined.
          Prokaryotes have two homologs (MutS1 and MutS2),
          whereas seven MSH proteins (MSH1 to MSH7) have been
          identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 216

 Score = 27.5 bits (61), Expect = 8.9
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 21 VLDDINLSFYPDAKIGIL-GPNGAGKSTILRIMAGI 55
          V +D  L   P+ +I ++ GPN AGKST LR +A I
Sbjct: 20 VPNDTELD--PERQILLITGPNMAGKSTYLRQVALI 53


>gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation
          factor-like protein ARL2 [Intracellular trafficking,
          secretion, and vesicular transport, Cytoskeleton].
          Length = 185

 Score = 27.5 bits (61), Expect = 9.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 34 KIGILGPNGAGKSTILRIMAGIDKE 58
          +I ILG + +GK+TI++ + G D +
Sbjct: 18 RILILGLDNSGKTTIVKKLLGEDTD 42


>gnl|CDD|111954 pfam03115, Astro_capsid, Astrovirus capsid protein precursor.  This
           product is encoded by astrovirus ORF2, one of the three
           astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
           undergoes an intracellular cleavage to form a 79kD
           protein. Subsequently, extracellular trypsin cleavage
           yields the three proteins forming the infectious virion.
          Length = 787

 Score = 27.4 bits (61), Expect = 9.1
 Identities = 17/69 (24%), Positives = 24/69 (34%)

Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDI 402
            G   +I P  A     F M T      +    + E       D   D +  E+T  ED 
Sbjct: 621 QGTAHLITPPPAASQIYFEMRTSLPQSRAELSGLEERAVEDAPDPYEDLISLEETDTEDE 680

Query: 403 SGGDDIVKL 411
           S  D+  +L
Sbjct: 681 STEDEDDEL 689


>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
           replication, recombination, and repair].
          Length = 515

 Score = 27.3 bits (60), Expect = 9.6
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 38  LGPNGAGKSTILRIMA-------GIDKEYNGEAWLATGFTVGYLPQEPQLD-LSKTVKEN 89
            GP G GK+TI RI+A       G   E  G+         G L    ++D  S T  ++
Sbjct: 44  SGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDD 103

Query: 90  I 90
           I
Sbjct: 104 I 104


>gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome
          protein SMC5/Spr18, SMC superfamily [Chromatin
          structure and dynamics, Cell cycle control, cell
          division, chromosome partitioning, Replication,
          recombination and repair].
          Length = 1072

 Score = 27.6 bits (61), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 27 LSFYPDAKIG-ILGPNGAGKSTI 48
            F P   +  I+GPNG+GKS+I
Sbjct: 36 TEFLPGPSLNMIIGPNGSGKSSI 58


>gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily.  Miro (mitochondrial Rho)
          proteins have tandem GTP-binding domains separated by a
          linker region containing putative calcium-binding EF
          hand motifs.  Genes encoding Miro-like proteins were
          found in several eukaryotic organisms.  This CD
          represents the putative GTPase domain in the C terminus
          of Miro proteins.  These atypical Rho GTPases have
          roles in mitochondrial homeostasis and apoptosis.  Most
          Rho proteins contain a lipid modification site at the
          C-terminus; however, Miro is one of few Rho subfamilies
          that lack this feature.
          Length = 169

 Score = 27.6 bits (62), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 37 ILGPNGAGKSTILRIMAG 54
          +LG  G+GKS +LR   G
Sbjct: 9  VLGAKGSGKSALLRAFLG 26


>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
          transport and metabolism].
          Length = 178

 Score = 27.5 bits (61), Expect = 9.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)

Query: 34 KIGILGPNGAGKSTILRIMA 53
          +I ILGP GAGKST+ + +A
Sbjct: 2  RILILGPPGAGKSTLAKKLA 21


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,530,602
Number of extensions: 354794
Number of successful extensions: 2510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2209
Number of HSP's successfully gapped: 657
Length of query: 539
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 441
Effective length of database: 4,146,055
Effective search space: 1828410255
Effective search space used: 1828410255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)