RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780273|ref|YP_003064686.1| putative ABC transporter
ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
(539 letters)
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 1058 bits (2738), Expect = 0.0
Identities = 341/538 (63%), Positives = 427/538 (79%), Gaps = 7/538 (1%)
Query: 1 MARKFIYHMAGLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY 59
M ++IY M +SKV KK +L DI+LSF+P AKIG+LG NGAGKST+LRIMAG+DKE+
Sbjct: 1 MMAQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF 60
Query: 60 NGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE------ 113
GEA A G VGYLPQEPQLD KTV+EN+ EGVA +A LDR+NE+ Y+E
Sbjct: 61 EGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD 120
Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173
E +LQ+IID+ WDL++++++A+++L CP +T LSGGE+RRVALC+LLL
Sbjct: 121 ALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE 180
Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIP 233
PD+LLLDEPTNHLDAE++AW+E++L +Y G V+ VTHDRYFLDNV WILE+DRG+GIP
Sbjct: 181 KPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 240
Query: 234 YQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVE 293
++GNYS++L+ KAKR+AQE ++E +RQKA++RE +W+ SPKARQ+KSKAR+ YEEL+
Sbjct: 241 WEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLS 300
Query: 294 SAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNG 353
+ +I IP G RLG VIEA+ +SKS+ DRLLID+LSF LPPGGIVG+IGPNG
Sbjct: 301 EEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNG 360
Query: 354 AGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNG 413
AGK+TLF+M+TG E PDSGTI +GETV L+YVDQSRD+L+ KTVWE+ISGG DI+K+
Sbjct: 361 AGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGN 420
Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
EI SRAY FNFKGGDQQ+++G LSGG+R R+HLAK LK GGNV+LLDEPTNDLD ET
Sbjct: 421 REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480
Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531
L ALE+AL F GCAV+ISHDR FLDR+ATHILAFEG+ VEWFEGNF+EYE+DK R
Sbjct: 481 LRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKKRR 538
Score = 90.2 bits (225), Expect = 1e-18
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216
LSGGE+ R+ L K L ++LLLDEPTN LD ET+ +E+ L E+ G ++++HDR+FL
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFL 505
Query: 217 DNVTNWIL--EVDRGKGIPYQGNYSAYLQMKAKRMAQE 252
D + IL E D + ++GN+ Y + K +R+ +
Sbjct: 506 DRIATHILAFEGD-SQVEWFEGNFQEYEEDKKRRLGAD 542
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 962 bits (2489), Expect = 0.0
Identities = 345/536 (64%), Positives = 432/536 (80%), Gaps = 7/536 (1%)
Query: 3 RKFIYHMAGLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG 61
++IY M +SKV KK +L DI+LSF+P AKIG+LG NGAGKST+LRIMAG+DKE+NG
Sbjct: 1 AQYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG 60
Query: 62 EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE---- 117
EA A G VGYLPQEPQLD +KTV+EN+ EGVA + LDR+NE+ ++E +
Sbjct: 61 EARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDAL 120
Query: 118 --EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
E A+LQ+IID+ WDL+ ++++A+++L CP ++T LSGGE+RRVALC+LLLS P
Sbjct: 121 LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180
Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQ 235
D+LLLDEPTNHLDAE++AW+E++L+EY G V+ VTHDRYFLDNV WILE+DRG+GIP++
Sbjct: 181 DMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240
Query: 236 GNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESA 295
GNYS++L+ K KR+ QE +EE +RQKA++RE +W+ SSPKARQ+KSKAR+ YEEL+
Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQE 300
Query: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAG 355
+ A+I IP G RLG VIEA+ +SK + D+LLID+LSFKLPPGGIVGVIGPNGAG
Sbjct: 301 FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAG 360
Query: 356 KTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE 415
K+TLFRM+TG E PDSGTI +GETV L+YVDQSRD+L+ KTVWE+ISGG DI++L E
Sbjct: 361 KSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE 420
Query: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
+ SRAY FNFKG DQQ+++G LSGG+R RVHLAK LKSGGNV+LLDEPTNDLD ETL
Sbjct: 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480
Query: 476 ALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531
ALE+AL FAGCAV+ISHDR FLDR+ATHILAFEG+ HVEWFEGN+ EYE+DK R
Sbjct: 481 ALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRR 536
Score = 131 bits (333), Expect = 3e-31
Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 38/247 (15%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
LSK FG K ++DD++ P +G++GPNGAGKST+ R++ G ++ +G + G T
Sbjct: 327 NLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT--IKIGET 384
Query: 71 V--GYLPQEPQ-LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
V Y+ Q LD +KTV EEI+ DII
Sbjct: 385 VKLAYVDQSRDALDPNKTV-----------------------------WEEISGGLDIIQ 415
Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
G ++ + V + + LSGGE+ RV L K L S ++LLLDEPTN L
Sbjct: 416 L-GKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474
Query: 188 DAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWIL--EVDRGKGIPYQGNYSAYLQMK 245
D ET+ +E+ L E++G ++++HDR+FLD + IL E D ++GNYS Y + K
Sbjct: 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGD-SHVEWFEGNYSEYEEDK 533
Query: 246 AKRMAQE 252
+R+ ++
Sbjct: 534 KRRLGED 540
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 370 bits (951), Expect = e-103
Identities = 184/519 (35%), Positives = 298/519 (57%), Gaps = 17/519 (3%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG---IDKEYNGEAWLATGFTVG 72
F +LD+ L + ++ ++G NGAGKST+++I+ G +D +G V
Sbjct: 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDLIVA 69
Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNEL----MMNYSEKTEEEIAKLQDIIDS 128
L Q+P ++ TV + + EG+ + L RY+++ + SEK E+AKLQ+ +D
Sbjct: 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDH 129
Query: 129 KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
LW LE + + L D ++SLSGG R+ AL + L+S+PD+LLLDEPTNHLD
Sbjct: 130 HNLWQLENRINEVLAQLGLDPDAA-LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Query: 189 AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK- 247
ETI W+E +L+ + G+++ ++HDR F+ N+ I+++DRGK + Y GNY YL K +
Sbjct: 189 IETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEA 248
Query: 248 -RMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEEL-VESAAHRH-PGNAQ 304
R+ + E R+ A +E WI KAR+++++ R+R+ + L E + R G A+
Sbjct: 249 LRVEELQNAEFDRKLA--QEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAK 306
Query: 305 IIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364
+ + R G +V E + ++ + + L+ + S ++ G + +IGPNG GKTTL +++
Sbjct: 307 MQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLML 366
Query: 365 GDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
G DSG IH G + ++Y DQ R L+ EKTV ++++ G V +NG + Y
Sbjct: 367 GQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD 426
Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF 484
F F + +LSGG+R R+ LA++ N+++LDEPTNDLD ETL LE+ L+++
Sbjct: 427 FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY 486
Query: 485 AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
G +++SHDR F+D T FEGNG + + G + +
Sbjct: 487 QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525
Score = 120 bits (304), Expect = 7e-28
Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 49/296 (16%)
Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
K ++ M ++ K+++ D + KI ++GPNG GK+T+L++M G + +G
Sbjct: 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
Query: 64 WLATGFTVGYLPQ-EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122
T V Y Q +LD KTV +N+ EG KQ E+M+N + + L
Sbjct: 377 HCGTKLEVAYFDQHRAELDPEKTVMDNLAEG---KQ-------EVMVN--GRPRHVLGYL 424
Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLN-ITSLSGGEKRRVALCKLLLSSPDLLLLD 181
QD L P + + +LSGGE+ R+ L +L L +LL+LD
Sbjct: 425 QDF-------------------LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD 465
Query: 182 EPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDN-VTN-WILEVDRGKGI--PYQGN 237
EPTN LD ET+ +E+ L Y G VL+V+HDR F+DN VT WI E G G Y G
Sbjct: 466 EPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFE---GNGKIGRYVGG 522
Query: 238 YSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVE 293
Y Q +A+ +A + +++ ++PKA K ++ SY+ E
Sbjct: 523 YHDARQQQAQYLALKQPAVKKKEE---------AAAPKAETVKRSSKKLSYKLQRE 569
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 244 bits (624), Expect = 5e-65
Identities = 163/524 (31%), Positives = 277/524 (52%), Gaps = 32/524 (6%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
G + +LD+ + P K+G++G NG GKST+L ++ G + + ++ Q
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQ 71
Query: 77 E-PQLDLSKTVKENIIEGVAHKQAILDR-YNELMMNYSEKTEEE----IAKLQDIIDSKG 130
E P L E +I+G DR Y +L + E IA + +D+
Sbjct: 72 ETPALPQPAL--EYVIDG--------DREYRQLEAQLHDANERNDGHAIATIHGKLDAID 121
Query: 131 LWDLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
W + + + L + L ++ SGG + R+ L + L+ DLLLLDEPTNHLD
Sbjct: 122 AWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
Query: 189 AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKR 248
+ + W+EK+L+ Y G +++++HDR FLD + + I+ +++ Y GNYS++ +A R
Sbjct: 182 LDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATR 241
Query: 249 MAQENREEISRQKAIERERDWI----VSSPKARQSKSKARIRSYEELVESAAHRHPGNAQ 304
+AQ+ S+Q+ + + +I + KA+Q++S+ ++ EL+ A +P +
Sbjct: 242 LAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFS 301
Query: 305 IIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364
P + L + +++ + +S Y DR+++D++ L PG +G++G NGAGK+TL ++L
Sbjct: 302 FRAP--ESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA 359
Query: 365 GDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS--RAYC 422
G+ +P SG I + + + L Y Q + LE + D S + +L E+ R Y
Sbjct: 360 GELAPVSGEIGLAKGIKLGYFAQHQ--LEFLRA---DESPLQHLARLAPQELEQKLRDYL 414
Query: 423 SAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482
F F+G + SGG++ R+ LA I+ N++LLDEPTN LD + AL +AL
Sbjct: 415 GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474
Query: 483 NFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
+F G V++SHDR L R T L +G VE F+G+ E+Y++
Sbjct: 475 DFEGALVVVSHDRHLL-RSTTDDLYLVHDGKVEPFDGDLEDYQQ 517
Score = 111 bits (278), Expect = 6e-25
Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 43/282 (15%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68
M +S +G + +LD I L+ P ++IG+LG NGAGKST+++++AG +GE LA G
Sbjct: 315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG 374
Query: 69 FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDS 128
+GY Q QL+ + E+ ++ H + + E KL+D +
Sbjct: 375 IKLGYFAQH-QLEFLRA-DESPLQ---HLARLAPQELE-------------QKLRDYLGG 416
Query: 129 KGLW-DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
G D TE SGGEK R+ L ++ P+LLLLDEPTNHL
Sbjct: 417 FGFQGDKVTE---------------ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461
Query: 188 DAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK 247
D + + + L ++ GA+++V+HDR+ L + T+ + V GK P+ G+ Y Q +
Sbjct: 462 DLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSD 521
Query: 248 RMAQENREEISRQKAIERERDWIVSSPKAR--QSKSKARIRS 287
QEN+ + E ++ +S +AR Q + +A +R+
Sbjct: 522 VQKQENQTD-------EAPKENNANSAQARKDQKRREAELRT 556
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 237 bits (606), Expect = 6e-63
Identities = 172/546 (31%), Positives = 276/546 (50%), Gaps = 70/546 (12%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75
FG+K + ++I++ F + G++G NG GKST ++I+ G + G L +G L
Sbjct: 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLR 70
Query: 76 QEPQLDLSK-TVKENIIEGVAHKQ--AILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
Q+ Q + TV + +I G H + + + + E +EE+ K+ D
Sbjct: 71 QD-QFAFEEFTVLDTVIMG--HTELWEVKQERDRIYAL-PEMSEEDGMKVAD-------- 118
Query: 133 DLETE-----------------VQVAI-ESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
LE + + V I E H GL ++ ++ G K RV L + L S+
Sbjct: 119 -LEVKFAEMDGYTAEARAGELLLGVGIPEEQH---YGL-MSEVAPGWKLRVLLAQALFSN 173
Query: 175 PDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
PD+LLLDEPTN+LD TI W+E L E + +++++HDR+FL++V + ++D G+ Y
Sbjct: 174 PDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233
Query: 235 QGNYSAYLQMKAKRMAQENREEISRQKAIER--ERDWIVS-----SPKARQSKSKAR--- 284
GNY Y M A A+E R K + E VS + KA+Q+ S+A+
Sbjct: 234 PGNYDEY--MTAATQARE-RLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQID 290
Query: 285 -IRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPG 343
I+ E V+ ++ ++P I K+L +E + ++K +++ L NL+ L G
Sbjct: 291 KIKLEE--VKPSSRQNP---FIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAG 345
Query: 344 GIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ-SRDSLEAEKTVWEDI 402
+ +IG NG GKTTL R L G+ PDSGT+ E + Y Q E + T+++ +
Sbjct: 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWM 405
Query: 403 S----GGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458
S GDD E R F D ++ + LSGG++GR+ K++ N
Sbjct: 406 SQWRQEGDD-------EQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458
Query: 459 VILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFE 518
V+++DEPTN +D E++ +L ALE + G + +SHDR F+ LAT I+ +G V+ F
Sbjct: 459 VLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVD-FS 517
Query: 519 GNFEEY 524
G +EEY
Sbjct: 518 GTYEEY 523
Score = 118 bits (297), Expect = 6e-27
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 43/242 (17%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
L+K F + + ++NL ++ I+G NG GK+T+LR + G + +G +
Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENAN 383
Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130
+GY Q+ + + D
Sbjct: 384 IGYYAQD-------------------------------------HAYDFENDLTLFDWMS 406
Query: 131 LW----DLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
W D E V+ + L D + + LSGGEK R+ KL++ P++L++DEPT
Sbjct: 407 QWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466
Query: 185 NHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQM 244
NH+D E+I + L +Y G ++ V+HDR F+ ++ I+E+ + + G Y YL+
Sbjct: 467 NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526
Query: 245 KA 246
+
Sbjct: 527 QG 528
Score = 42.6 bits (101), Expect = 3e-04
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ I+ + + L +N+S K G G+IG NG GK+T ++L GD P +G + +
Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 162 bits (411), Expect = 2e-40
Identities = 157/558 (28%), Positives = 251/558 (44%), Gaps = 61/558 (10%)
Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-----GIDK----- 57
HM S G + ++ D +++ G++G NG GK+T LR MA GI K
Sbjct: 179 HMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238
Query: 58 ----EYNGEAWLATGFTVG-------YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNE 106
E G+ A + L +E QL + E E K A D ++
Sbjct: 239 HVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK 298
Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPAD--GLNITSLSGGEKRR 164
++ + EEI K ++ID+ + E + L + + SGG + R
Sbjct: 299 DAVS---QRLEEIYKRLELIDA---YTAEARAASILAGLSFTPEMQVKATKTFSGGWRMR 352
Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWIL 224
+AL + L PDLLLLDEPTNHLD + W+E YL ++ ++V+H R FL+ V IL
Sbjct: 353 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412
Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAI---ERERDWIVS------SPK 275
+ K + Y+G+Y + + + +++ + QKA ER R + +
Sbjct: 413 HLHGQKLVTYKGDYDTFERTREEQLKNQ-------QKAFESNERSRSHMQAFIDKFRYNA 465
Query: 276 ARQSKSKARIRSYEELVESAAHRHPGNAQIIIPV-GKRLGHVVIEAKGISKSY-NDRLLI 333
R S ++RI++ + L A + + + P R G +I S Y LL
Sbjct: 466 KRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLF 525
Query: 334 DNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR-DSL 392
NL+F + + ++GPNG GK+T+ ++++G+ P SGT+ V ++ Q D L
Sbjct: 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGL 585
Query: 393 EAEKTVWEDISGGDDIVKLNGH----EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVH 448
D+S + + E RA+ +F G Q + +LSGGQ+ RV
Sbjct: 586 --------DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 637
Query: 449 LAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAF 508
AKI +++LLDEP+N LD + + AL L F G +++SHD + + L
Sbjct: 638 FAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG-SVDELWV 696
Query: 509 EGNGHVEWFEGNFEEYEK 526
G V F G F +Y+K
Sbjct: 697 VSEGKVTPFHGTFHDYKK 714
Score = 83.8 bits (207), Expect = 9e-17
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 36/230 (15%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
G + ++N D++I ++GPNG GKSTIL++++G + +G + + + Q
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQ 579
Query: 77 E--PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134
LDLS +L MM E+ KL+ + S G+
Sbjct: 580 HHVDGLDLSSN-------------PLL-----YMMRCFPGVPEQ--KLRAHLGSFGV--- 616
Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW 194
+A++ ++ +LSGG+K RVA K+ P +LLLDEP+NHLD + +
Sbjct: 617 --TGNLALQPMY---------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665
Query: 195 MEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQM 244
+ + L + G VLMV+HD + + + + V GK P+ G + Y +
Sbjct: 666 LIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715
Score = 68.7 bits (168), Expect = 3e-12
Identities = 69/260 (26%), Positives = 105/260 (40%), Gaps = 47/260 (18%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR---MLTGDESPDSGTI 374
I + S S R LI + S L G G++G NG GKTT R M D P + I
Sbjct: 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI 237
Query: 375 -HVGETV---------CLSYVDQSRDSL--------EAEKTVWEDISGGDDIVKLNG--- 413
HV + V C+ D R L ++ + + G
Sbjct: 238 LHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVD 297
Query: 414 --------HEINSR-----AYCS---------AFNFKGGDQQQRIGSLSGGQRGRVHLAK 451
EI R AY + +F Q + + SGG R R+ LA+
Sbjct: 298 KDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALAR 357
Query: 452 ILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGN 511
L +++LLDEPTN LD + LE L + +++SH R FL+ + T IL G
Sbjct: 358 ALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQ 417
Query: 512 GHVEWFEGNFEEYEKDKLSR 531
V ++G+++ +E+ + +
Sbjct: 418 KLVT-YKGDYDTFERTREEQ 436
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 119 bits (302), Expect = 1e-27
Identities = 133/529 (25%), Positives = 203/529 (38%), Gaps = 154/529 (29%)
Query: 35 IGILGPNGAGKSTILRIMAGIDK----EYNGEA-W-----------LATGFTVGYLPQEP 78
GILGPNG GK+T ++I++G +Y E W L F
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF--------- 152
Query: 79 QLDLSKTVKENIIEGVAHK-QAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
K + I+ V HK Q + + + + K E + K +D +G D E
Sbjct: 153 -----KKLYNGEIK-VVHKPQYV----DLIPKVFKGKVRELLKK----VDERGKLD---E 195
Query: 138 VQVAIESLHCPADGL------NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD-AE 190
V +E L GL +I+ LSGGE +RVA+ LL D DEPT++LD +
Sbjct: 196 V---VERL-----GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247
Query: 191 TIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKR 248
+ + + +RE + VL+V HD LD + + + I Y G AY
Sbjct: 248 RLN-VARLIRELAEGKYVLVVEHDLAVLDYLADNVH-------IAY-GEPGAY------- 291
Query: 249 MAQENREEISRQKAIERERDWIVSSPK-ARQ----------SKSKARIRSYEELVESAAH 297
+VS PK R + RIR E
Sbjct: 292 --------------------GVVSKPKGVRVGINEYLKGYLPEENMRIRPEPIEFEERPP 331
Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLP-------PGGIVGVIG 350
R ++E ++K D F L G ++G++G
Sbjct: 332 RDESE-----------RETLVEYPDLTKKLGD--------FSLEVEGGEIYEGEVIGIVG 372
Query: 351 PNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ--SRDSLEAEKTVWEDISGGDDI 408
PNG GKTT ++L G PD G V + +SY Q D + TV +D+
Sbjct: 373 PNGIGKTTFAKLLAGVLKPDEGE--VDPELKISYKPQYIKPDY---DGTV-------EDL 420
Query: 409 VKLNGHEINSRAYCSAFNFKGGDQ---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465
++ ++ S Y S + + + LSGG+ RV +A L ++ LLDEP
Sbjct: 421 LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480
Query: 466 TNDLDTE----TLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEG 510
+ LD E A+ E A+++ HD +D ++ ++ FEG
Sbjct: 481 SAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 338 FKLP---PGGIVGVIGPNGAGKTTLFRMLTG 365
+ LP G + G++GPNG GKTT ++L+G
Sbjct: 91 YGLPIPKEGKVTGILGPNGIGKTTAVKILSG 121
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 117 bits (296), Expect = 6e-27
Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 47/235 (20%)
Query: 9 MAGLSKVFG--SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE---- 62
+GLS + L ++ + P ++ ++GP+GAGKST+L ++ G G
Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382
Query: 63 -----AWLATGF--TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115
A + + ++PQ P L + T+ ENI +A A +
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFL-FAGTIAENI--RLARPDA---------------S 424
Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
+ EI + ++ GL + V + L G LSGG+ +R+AL + L
Sbjct: 425 DAEI---RRALERAGLDEF---VAALPQGLDTLI-GEGGAGLSGGQAQRLALARAFLRDA 477
Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDR 228
LLLLDEPT HLDAET A + + LR + VL+VTH DR
Sbjct: 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRL-------ALAERADR 525
Score = 92.4 bits (230), Expect = 2e-19
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 34/216 (15%)
Query: 317 VIEAKGISKSYNDR--LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+E G+S +Y R + +SF +PPG V ++GP+GAGK+TL +L G P G+I
Sbjct: 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 375 HV-GETVCLSYVDQSRDSLE--------AEKTVWEDISGG-----DDIVKLNGHEINSRA 420
V G + + D RD + T+ E+I D ++ RA
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR----RALERA 435
Query: 421 YCSAF--------NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
F + G+ LSGGQ R+ LA+ ++LLDEPT LD E
Sbjct: 436 GLDEFVAALPQGLDTLIGEGGAG---LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492
Query: 473 TLSALEDALENFAGCA--VIISHDRMFLDRLATHIL 506
T + + +AL A ++++H A I+
Sbjct: 493 TEALVTEALRALAQGRTVLLVTHRLALA-ERADRIV 527
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 101 bits (253), Expect = 5e-22
Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 53/216 (24%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----------A 66
GS VLD ++L P ++ ILGP+G+GKST+L ++ G+ GE L
Sbjct: 346 GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDE 405
Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
+ Q+ L TV++N L + + T+EE+ +
Sbjct: 406 LRRRISVFAQDAHL-FDTTVRDN-----------------LRLGRPDATDEELW---AAL 444
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNI------TSLSGGEKRRVALCKLLLSSPDLLLL 180
+ GL D + SL DGL+ LSGGE++R+AL + LL+ +LLL
Sbjct: 445 ERVGLADW-------LRSL---PDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 494
Query: 181 DEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212
DEPT HLDA T + + L V+++TH
Sbjct: 495 DEPTEHLDAGTESELLEDLLAALSGK--TVVVITHH 528
Score = 80.9 bits (200), Expect = 8e-16
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 29/205 (14%)
Query: 313 LGHVVIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371
LG +E + +S Y ++D +S LPPG V ++GP+G+GK+TL +LTG P
Sbjct: 330 LGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389
Query: 372 GTIHVGETVCLSYVDQSRD--SLEAEK------TVWEDI------SGGDDI------VKL 411
G + + S D+ R S+ A+ TV +++ + +++ V L
Sbjct: 390 GEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGL 449
Query: 412 NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
R+ + G+ R LSGG+R R+ LA+ L + ++LLDEPT LD
Sbjct: 450 ---ADWLRSLPDGLDTVLGEGGAR---LSGGERQRLALARALLADAPILLLDEPTEHLDA 503
Query: 472 ETLSA-LEDALENFAGCAVI-ISHD 494
T S LED L +G V+ I+H
Sbjct: 504 GTESELLEDLLAALSGKTVVVITHH 528
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 99.6 bits (249), Expect = 2e-21
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 49/225 (21%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65
+ +SK FG K +LDD+NL+ I+G +G+GKST+L I+ ++K +G+ +L
Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60
Query: 66 ---------ATGF---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE 113
A+ F +GYL Q L ++TV+EN+ +L + Y +
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL---------------DLGLKYKK 105
Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIE-SLHCPADGLNITSLSGGEKRRVALCKLLL 172
+++E + + E +V + L I LSGGE++RVAL + +L
Sbjct: 106 LSKKEKREKK----------KEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAIL 150
Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRY 214
P L+L DEPT LD + + L E + +++VTHD
Sbjct: 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195
Score = 92.3 bits (230), Expect = 3e-19
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 22/194 (11%)
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV 380
K ISK + D++++D+L+ + G + +IG +G+GK+TL ++ E DSG +++
Sbjct: 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE 61
Query: 381 C---------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425
L Y+ Q+ +E E TV E++ G KL+ E + A
Sbjct: 62 TPPLNSKKASKFRREKLGYLFQNFALIENE-TVEENLDLGLKYKKLSKKEKREKKK-EAL 119
Query: 426 NFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE- 482
G +Q+I LSGG++ RV LA+ + +IL DEPT LD + + D L
Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 483 -NFAGCAVII-SHD 494
N G +II +HD
Sbjct: 180 LNDEGKTIIIVTHD 193
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 97.9 bits (244), Expect = 5e-21
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 19/199 (9%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
I ++K Y + +D +SF+ G IVG +GPNGAGK+T +++TG PDSG++ V
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 377 GETVCLSYVDQSR--------DSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCSAFNF 427
GE V + + R + L + V E + I + G + R
Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG 122
Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGC 487
+Q ++IG LS G R RV LA+ L V++LDEPT LD L + + ++N
Sbjct: 123 LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 488 AVIISHDRMFLDRLATHIL 506
II L+THI+
Sbjct: 183 KTII---------LSTHIM 192
Score = 73.7 bits (181), Expect = 1e-13
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 41/231 (17%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG---------- 61
L+K++G++ LD+++ +G LGPNGAGKST ++I+ G +G
Sbjct: 8 LTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL 67
Query: 62 EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
+ +GYLP+ L L V+E + Q I Y ++ EE I
Sbjct: 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYL-------QFIAGIYGMKGQLLKQRVEEMIEL 120
Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
+ GL P I LS G ++RV L + L+ P +L+LD
Sbjct: 121 V-------GL---------------RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158
Query: 182 EPTNHLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNWILEVDRGK 230
EPT LD + + ++ +++ TH ++ + + ++ +++GK
Sbjct: 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGK 209
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 96.8 bits (241), Expect = 1e-20
Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 42/235 (17%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65
+A +SK FGS + LDD+NL + + +LGP+G+GKST+LRI+AG+++ +G L
Sbjct: 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62
Query: 66 -ATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
AT +G++ Q L TV++NI G+ E+ + K + +
Sbjct: 63 DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL-----------EIRKHPKAKIKARV 111
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
+L +++ +GL D P LSGG+++RVAL + L P +LL
Sbjct: 112 EELLELVQLEGLGD------------RYPN------QLSGGQRQRVALARALAVEPQVLL 153
Query: 180 LDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
LDEP LDA E +W+ K E + VTHD+ V + I+ + GK
Sbjct: 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGK 208
Score = 84.9 bits (210), Expect = 5e-17
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
IE ISK + +D+++ ++P G +V ++GP+G+GK+TL R++ G E PDSG I +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 378 ETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSRA--Y 421
D +R K TV ++I+ G +I K +I +R
Sbjct: 61 GQ------DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL 114
Query: 422 CSAFNFKG-GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480
+G GD+ LSGGQR RV LA+ L V+LLDEP LD + L
Sbjct: 115 LELVQLEGLGDRYP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172
Query: 481 L----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
L + V ++HD+ +A I+ NG +E
Sbjct: 173 LRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKIE 210
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 96.5 bits (241), Expect = 1e-20
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 45/229 (19%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF-------- 69
LD+++L+ P K+ I+G G+GKST+L+++ G+ + G + L G
Sbjct: 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQIDPA 535
Query: 70 ----TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
+GY+PQ+P+L T+++NI G + D E ++ +E +A + +
Sbjct: 536 DLRRNIGYVPQDPRL-FYGTLRDNIALGAPY---ADD---EEILRAAE-----LAGVTEF 583
Query: 126 IDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
+ GL ++Q+ G SLSGG+++ VAL + LL P +LLLDEP
Sbjct: 584 VRRHPDGL-----DMQIG-------ERGR---SLSGGQRQAVALARALLRDPPILLLDEP 628
Query: 184 TNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230
T+ +D + + L+ + +++VTH LD V I+ +D G+
Sbjct: 629 TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR-IIVMDNGR 676
Score = 87.6 bits (218), Expect = 7e-18
Identities = 71/278 (25%), Positives = 118/278 (42%), Gaps = 65/278 (23%)
Query: 276 ARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSY--NDRLLI 333
R ++K ++S +EL++ R G + + G IE + +S +Y + +
Sbjct: 426 TRYQQAKTALQSLDELMQLPVERPEG--TRFLHRPRLQGE--IEFRNVSFAYPGQETPAL 481
Query: 334 DNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-----------------HV 376
DN+S + PG V +IG G+GK+TL ++L G P G++ ++
Sbjct: 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541
Query: 377 GETVCLSYVDQS--------RDSLEAEKTVWED--------ISGGDDIVKLNGHEINSRA 420
G YV Q RD++ +D ++G + V H
Sbjct: 542 G------YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFV--RRHP----- 588
Query: 421 YCSAFNFKGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478
G D Q +R SLSGGQR V LA+ L ++LLDEPT+ +D + +
Sbjct: 589 -------DGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK 641
Query: 479 DALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHV 514
D L+ + V+++H R L L I+ + NG +
Sbjct: 642 DRLKRWLAGKTLVLVTH-RTSLLDLVDRIIVMD-NGRI 677
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 94.9 bits (236), Expect = 4e-20
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357
+H G ++ + + V I+ G+SKSY D+ +++ LSF + G G++GPNGAGK+
Sbjct: 22 KHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKS 81
Query: 358 TLFRMLTGDESPDSGTIHV-GETVCLSYVDQSR------------DSLEAEKTVWEDISG 404
T+ RM+ G SPD+G I V G V ++R D+L+ E TV E++
Sbjct: 82 TIARMILGMTSPDAGKITVLGVPV----PARARLARARIGVVPQFDNLDLEFTVRENLLV 137
Query: 405 GDDIVKLNGHEINSRAYCSAFNFKGGDQQQ--RIGSLSGGQRGRVHLAKILKSGGNVILL 462
++ EI + S F + + R+ LSGG + R+ LA+ L + +++L
Sbjct: 138 FGRYFGMSTREIEA-VIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196
Query: 463 DEPTNDLD 470
DEPT LD
Sbjct: 197 DEPTTGLD 204
Score = 85.3 bits (211), Expect = 4e-17
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 44/217 (20%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------ 62
+AG+SK +G K V++ ++ + G+LGPNGAGKSTI R++ G+ G+
Sbjct: 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103
Query: 63 -----AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
A LA +G +PQ LDL TV+EN++ + RY M+ + + E
Sbjct: 104 PVPARARLARA-RIGVVPQFDNLDLEFTVRENLL--------VFGRY--FGMS-TREIEA 151
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
I L + LE++ ++ LSGG KRR+ L + L++ P L
Sbjct: 152 VIPSLLEFA------RLESKADA------------RVSDLSGGMKRRLTLARALINDPQL 193
Query: 178 LLLDEPTNHLD--AETIAWME-KYLREYSGAVLMVTH 211
L+LDEPT LD A + W + L +L+ TH
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 93.7 bits (233), Expect = 1e-19
Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 14/166 (8%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
I+ + + K Y D+L++D LSF + G G++GPNGAGKTT RML G PD+G+I +
Sbjct: 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66
Query: 377 -GETVCLSYVDQSR---------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426
GE V S +R D+L+ + TV E++ L+ +
Sbjct: 67 CGEPVP-SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV-PPLLE 124
Query: 427 FKGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
F + + ++G LSGG + R+ LA+ L + +V++LDEPT LD
Sbjct: 125 FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Score = 84.1 bits (208), Expect = 9e-17
Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI---------- 55
+ K +G K V+D ++ G+LGPNGAGK+T LR++ G+
Sbjct: 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66
Query: 56 -DKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
+ A A VG +PQ LD TV+EN++ + RY L +
Sbjct: 67 CGEPVPSRARHAR-QRVGVVPQFDNLDPDFTVRENLL--------VFGRYFGLSAAAARA 117
Query: 115 ---TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
E AKL++ D+K + LSGG KRR+ L + L
Sbjct: 118 LVPPLLEFAKLENKADAK------------------------VGELSGGMKRRLTLARAL 153
Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTH 211
++ PD+L+LDEPT LD + M + LR +L+ TH
Sbjct: 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 93.1 bits (232), Expect = 2e-19
Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 61/250 (24%)
Query: 8 HMAGLSKVFGS----KKVLDDINLSFYPDAKIGIL-GPNGAGKSTILRIMAGI------- 55
+ L+ +G K+VL DINL P +I IL GP+G+GK+T+L ++ G+
Sbjct: 3 SIRNLNHYYGHGSLRKQVLFDINLEINP-GEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 56 ----DKEYNGEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY 104
+E G A+ +GY+ Q L T ++N+ +
Sbjct: 62 LKVLGQELYG----ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------- 107
Query: 105 NELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164
EL N S + E + + ++++ GL D L L SGG+K+R
Sbjct: 108 -ELQPNLSYQ--EARERARAMLEAVGLGD----------HLDYYPHNL-----SGGQKQR 149
Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDRYFLDNVT 220
VA+ + L+ P L+L DEPT LD+++ + M+K RE +L+VTHD LD V
Sbjct: 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VA 208
Query: 221 NWILEVDRGK 230
+ I+ ++ GK
Sbjct: 209 DRIVHMEDGK 218
Score = 63.9 bits (156), Expect = 1e-10
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 317 VIEAKGISKSY----NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
VI + ++ Y + ++ +++ ++ PG IV + GP+G+GKTTL ++ G S G
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60
Query: 373 TIHV-GETVC-------------LSYVDQSR---DSLEAEKTVWEDISGGDDIVKLNGHE 415
++ V G+ + + Y+ Q+ L A + V + L+ E
Sbjct: 61 SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNV---QMALELQPNLSYQE 117
Query: 416 INSRAYCSAFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
RA GD +LSGGQ+ RV +A+ L ++L DEPT LD+++
Sbjct: 118 ARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177
Query: 475 SALEDALENFA---GCAV-IISHDRMFLDRLATHILAFE 509
+ + ++ A GC + I++HD LD +A I+ E
Sbjct: 178 RDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHME 215
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 91.8 bits (228), Expect = 4e-19
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 27/174 (15%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
I+ +S + D ++D + + G +VG++GPNGAGKTTL R + G +P +GT+ V
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 377 GETVCLSYVDQSRDSLEAEK---TVWEDIS-----GGDDIVKLNGH----------EINS 418
G+ V ++ + A + +V +D S +V++ E +
Sbjct: 64 GDDV------EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR 117
Query: 419 RAYCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
A A G Q + + SLSGG+R RV LA+ L V+LLDEPT LD
Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
Score = 72.2 bits (177), Expect = 4e-13
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 38/192 (19%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-- 66
++ LS FG VLD ++LS + +G++GPNGAGK+T+LR + G G +A
Sbjct: 6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD 65
Query: 67 ---------TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
V +PQ+ L V++ + G ++ D + E
Sbjct: 66 DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE----------- 114
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPA-DGLNITSLSGGEKRRVALCKLLLSSPD 176
V+ A+E +TSLSGGE++RV L + L +
Sbjct: 115 ---------------TDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159
Query: 177 LLLLDEPTNHLD 188
+LLLDEPT LD
Sbjct: 160 VLLLDEPTASLD 171
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 90.3 bits (225), Expect = 1e-18
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 22/198 (11%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++E + ++ R+L LSF L G + + GPNG+GKTTL R++ G P +GTI +
Sbjct: 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61
Query: 377 -GETVCLSYVDQS------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
G + V ++ R++++ TV E++ L G E++ A A
Sbjct: 62 DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAF--LGGEELDIAAALEAVGL-A 118
Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGC 487
G LS GQ+ RV LA++L S + +LDEPT LD ++ + + G
Sbjct: 119 PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 488 AVIISHDRMFLDRLATHI 505
VI ATHI
Sbjct: 179 IVIA----------ATHI 186
Score = 71.4 bits (176), Expect = 5e-13
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 42/197 (21%)
Query: 26 NLSFY--PDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83
LSF + + GPNG+GK+T+LR++AG+ T+ +
Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--------PAAGTIKLDGGDIDDPDV 71
Query: 84 KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIE 143
+ H+ A+ L + E + + + E ++ A+E
Sbjct: 72 AEA----CHYLGHRNAMKP---ALTV------AENLEFWAAFLGGE-----ELDIAAALE 113
Query: 144 S------LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197
+ H P LS G+KRRVAL +LL+S+ + +LDEPT LDA +A +
Sbjct: 114 AVGLAPLAHLPFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
Query: 198 YLREYS---GAVLMVTH 211
+R + G V+ TH
Sbjct: 169 LIRAHLAQGGIVIAATH 185
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 90.2 bits (224), Expect = 1e-18
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 42/203 (20%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75
FG ++VL D++L P + +LGPNGAGKST++R++ G+ G +GY+P
Sbjct: 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVP 73
Query: 76 QEPQLD--LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133
Q+ LD L TV R+ L K +DI+ +
Sbjct: 74 QKLYLDTTLPLTVN---------------RFLRLRPG---------TKKEDILPA----- 104
Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE-TI 192
L+ VQ + P + LSGGE +RV L + LL+ P LL+LDEPT +D +
Sbjct: 105 LK-RVQAG-HLIDAP-----MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 193 A---WMEKYLREYSGAVLMVTHD 212
A +++ RE AVLMV+HD
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHD 180
Score = 80.5 bits (199), Expect = 1e-15
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 33/194 (17%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ + +S S+ R ++ ++S +L PG I+ ++GPNGAGK+TL R++ G +PD G I
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR 63
Query: 377 GETVCLSYVDQ------------SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
+ + YV Q +R T EDI V+ GH I
Sbjct: 64 NGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA-GHLI-------- 114
Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED---AL 481
+ LSGG+ RV LA+ L + +++LDEPT +D AL D L
Sbjct: 115 --------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
Query: 482 ENFAGCAVI-ISHD 494
CAV+ +SHD
Sbjct: 167 RRELDCAVLMVSHD 180
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 89.5 bits (223), Expect = 2e-18
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 52/214 (24%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++EA+ ++ ++R+L LSF L G +V + GPNGAGKT+L R+L G PD+G +
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
Query: 377 -GETVCLSYVDQSRDS-------------LEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422
GE + + RD ++ E T E N R Y
Sbjct: 61 QGEP-----IRRQRDEYHQDLLYLGHQPGIKTELTALE----------------NLRFYQ 99
Query: 423 SAFNFKGGDQQ----QRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
+ ++G LS GQ+ RV LA++ + + +LDEP
Sbjct: 100 RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159
Query: 469 LDTETLSALEDALENFA---GCAVIISHDRMFLD 499
+D + ++ LE L A G ++ +H + +
Sbjct: 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193
Score = 67.9 bits (167), Expect = 6e-12
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 39/205 (19%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA-WLATGFTVGYLP 75
+ + ++ + + I GPNGAGK+++LRI+AG+ + GE W G +
Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ--GEPIRRQR 69
Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE----IAKLQDIIDSKGL 131
E DL + H+ I +E T E +L D + L
Sbjct: 70 DEYHQDLLY---------LGHQPGI----------KTELTALENLRFYQRLHGPGDDEAL 110
Query: 132 WD-LETEVQVAIES-LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
W+ L QV + P LS G++RRVAL +L L+ L +LDEP +D
Sbjct: 111 WEALA---QVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
Query: 190 ETIAWMEKYLREYS---GAVLMVTH 211
+ +A +E L +++ G V++ TH
Sbjct: 163 QGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 89.2 bits (221), Expect = 2e-18
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 12/166 (7%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
V I+ G+SKSY D++++++LSF + G G++GPNGAGK+T+ RML G SPD G I
Sbjct: 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 376 VGETVCLSYVDQSR---------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426
V S +R D+L+ E TV E++ ++ EI + S
Sbjct: 63 VLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA-VIPSLLE 121
Query: 427 FKGGDQQQ--RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
F + + R+ LSGG + R+ LA+ L + +++LDEPT LD
Sbjct: 122 FARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Score = 86.9 bits (215), Expect = 1e-17
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 44/217 (20%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG-----------IDK 57
+ G+SK +G K V++D++ + G+LGPNGAGKSTI R++ G + +
Sbjct: 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66
Query: 58 EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
A LA +G +PQ LD TV+EN++ + RY + + + E
Sbjct: 67 PVPSRARLARV-AIGVVPQFDNLDPEFTVRENLL--------VFGRYFGM---STREIEA 114
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
I L + LE++ V + LSGG KRR+ L + L++ P L
Sbjct: 115 VIPSLLEFA------RLESKADV------------RVALLSGGMKRRLTLARALINDPQL 156
Query: 178 LLLDEPTNHLD--AETIAWME-KYLREYSGAVLMVTH 211
L+LDEPT LD A + W + L +L+ TH
Sbjct: 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 88.7 bits (220), Expect = 4e-18
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+ +S S RL++D + PPG + G++GPNG+GK+TL R+L G PD+GT+ +
Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61
Query: 378 ----------ETVC-LSYVDQS---------RDSLEAEKTVWEDISGGDDIVKLNGHEIN 417
++ V+Q RD + + + GD + +
Sbjct: 62 GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGD---SPHDAAVV 118
Query: 418 SR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT---- 471
R A + D + +LSGG+R RVH+A+ L ++LLDEPTN LD
Sbjct: 119 DRALARTELSHLADRD----MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174
Query: 472 ETLSALEDALENFAGCAVIIS-HDRMFLDRLATHILAFEG 510
ETL+ + + G V+ + HD H++ +G
Sbjct: 175 ETLALVRELAAT--GVTVVAALHDLNLAASYCDHVVVLDG 212
Score = 86.4 bits (214), Expect = 2e-17
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 29/213 (13%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68
++ +S G + ++D ++++ P + G+LGPNG+GKST+LR++AG + G LA
Sbjct: 4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV 63
Query: 69 FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDS 128
G LS+ + A + A++++ ++ + + + + + I
Sbjct: 64 DLHG---------LSRRAR-------ARRVALVEQDSDTAVPLTVRDVVALGR----IPH 103
Query: 129 KGLWDLETEVQVAIESLHCPADGL------NITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
+ LW ++ A+ L ++++LSGGE++RV + + L P LLLLDE
Sbjct: 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE 163
Query: 183 PTNHLDAETIAWMEKYLREYSG---AVLMVTHD 212
PTNHLD +RE + V+ HD
Sbjct: 164 PTNHLDVRAQLETLALVRELAATGVTVVAALHD 196
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 88.5 bits (220), Expect = 4e-18
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 50/228 (21%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP------ 75
L D++L + + GP+GAGK+T+L+++ G G+ +A G V L
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA-GEDVNRLRGRQLPL 76
Query: 76 ---------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK-LQDI 125
Q+ +L +TV EN+ L + K E EI + +
Sbjct: 77 LRRRIGVVFQDFRLLPDRTVYENV---------------ALPLEVRGKKEREIQRRVGAA 121
Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
+ GL + LSGGE++RVA+ + +++SP LLL DEPT
Sbjct: 122 LRQVGLEH----------KADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 186 HLDAETIAWMEKYLRE---YSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
+LD + + L+ V++ THD +D V + ++ +D G+
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
Score = 77.3 bits (191), Expect = 1e-14
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 317 VIEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+IE +SK+Y + ++S + G + + GP+GAGKTTL ++L G +P G +
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 376 VG----ETVCLSYVDQSRDS---------LEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422
+ + + R L ++TV+E+++ ++ EI R
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 423 S---------AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
+ A F LSGG++ RV +A+ + + ++L DEPT +LD +
Sbjct: 121 ALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172
Query: 474 LSALEDALE--NFAGCAVII-SHDRMFLDRLATHIL 506
+ D L+ N G VI+ +HD +DR+A ++
Sbjct: 173 SERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI 208
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 87.5 bits (218), Expect = 7e-18
Identities = 69/228 (30%), Positives = 96/228 (42%), Gaps = 60/228 (26%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------- 62
LS G + +LDD++L+ P + ILGPNGAGKST+LR ++G +GE
Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66
Query: 63 -AW----LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
W LA LPQ L TV+E + G + + E+
Sbjct: 67 ADWSPAELAR--RRAVLPQHSSLSFPFTVEEVVAMG-------------RAPHGLSRAED 111
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL--LSSP 175
+ + + L L G + LSGGE++RV L ++L L P
Sbjct: 112 DAL-VAAALAQVDLAHLA---------------GRDYPQLSGGEQQRVQLARVLAQLWEP 155
Query: 176 D----LLLLDEPTNHLDAETIAWMEKYLR-------EYSGAVLMVTHD 212
D LLLDEPT+ LD +A LR E AV++V HD
Sbjct: 156 DGPPRWLLLDEPTSALD---LAHQHHVLRLARQLAHERGLAVIVVLHD 200
Score = 83.7 bits (208), Expect = 1e-16
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
++EA+ +S R L+D++S L PG +V ++GPNGAGK+TL R L+G+ SPDSG +
Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 376 VG 377
+
Sbjct: 61 LN 62
Score = 44.8 bits (107), Expect = 6e-05
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 22/83 (26%)
Query: 438 SLSGGQRGRVHLAKIL------KSGGNVILLDEPTNDLDT----ETLSALEDALENFA-- 485
LSGG++ RV LA++L +LLDEPT+ LD L A
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL----RLARQLAHE 189
Query: 486 -GCAVI-ISHD----RMFLDRLA 502
G AVI + HD + DR+
Sbjct: 190 RGLAVIVVLHDLNLAARYADRIV 212
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 87.4 bits (217), Expect = 9e-18
Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 43/202 (21%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+ A+ ++ S +R+L + LSF L G + V GPNG GKTTL R+L G PDSG +
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60
Query: 378 ET----VCLSYVDQS-----RDSLEAEKTVWE------DISGGDDI--------VKLNGH 414
T L+ E + E I GG V L G
Sbjct: 61 GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF 120
Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
E LS GQ+ R+ LA++ S + +LDEPT LD +
Sbjct: 121 E-----------------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163
Query: 475 SALEDALENFA---GCAVIISH 493
+ L L G ++ +H
Sbjct: 164 ALLAGLLRAHLARGGIVLLTTH 185
Score = 73.9 bits (182), Expect = 1e-13
Identities = 60/202 (29%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 25 INLSFYPDA--KIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGFTVG--------- 72
LSF +A + + GPNG GK+T+LRI+AG+ + +GE W T
Sbjct: 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL 76
Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
YL P L + EN L + + E+ +A + GL
Sbjct: 77 YLGHLPGLKPELSALEN-----------LHFWAAIHGGAQRTIEDALAAV-------GLT 118
Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192
E PA LS G++RR+AL +L LS L +LDEPT LD +
Sbjct: 119 GFE----------DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163
Query: 193 AWMEKYLREY---SGAVLMVTH 211
A + LR + G VL+ TH
Sbjct: 164 ALLAGLLRAHLARGGIVLLTTH 185
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 86.8 bits (216), Expect = 1e-17
Identities = 72/249 (28%), Positives = 105/249 (42%), Gaps = 61/249 (24%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTIL------------RIM-AGID-KEYNGEAWL 65
VL ++L K+ +LG G GKST+L I+ G +Y+ EA L
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS-EAAL 412
Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE-IAKLQD 124
+V + Q L S T+++N L++ ++E I LQ
Sbjct: 413 RQAISV--VSQRVHL-FSATLRDN-----------------LLLAAPNASDEALIEVLQ- 451
Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNI------TSLSGGEKRRVALCKLLLSSPDLL 178
QV +E L GLN LSGGE+RR+ + + LL LL
Sbjct: 452 --------------QVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497
Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236
LLDEPT LDAET + + L E++ VLM+TH L+ + +D G+ I QG
Sbjct: 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV-MDNGQIIE-QG 555
Query: 237 NYSAYLQMK 245
+ L +
Sbjct: 556 THQELLAQQ 564
Score = 46.7 bits (112), Expect = 1e-05
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 310 GKRLGHVVIEAKGISKSYNDR--LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367
V + +S +Y D+ ++ LS ++ G V ++G G GK+TL ++LT
Sbjct: 331 TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390
Query: 368 SPDSGTI 374
P G I
Sbjct: 391 DPQQGEI 397
Score = 42.1 bits (100), Expect = 4e-04
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENF 484
GG Q LSGG++ R+ +A+ L ++LLDEPT LD ET L L E+
Sbjct: 472 GGRQ------LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL---AEHA 522
Query: 485 AGCAVI-ISH 493
V+ I+H
Sbjct: 523 QNKTVLMITH 532
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 86.2 bits (214), Expect = 2e-17
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 46/217 (21%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65
+ K FG+ L DI+LS + +LGP+G GK+T+LRI+AG++++ G +
Sbjct: 9 NIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68
Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
+ G + Q L + TV +NI G+ N M E
Sbjct: 69 TRLPPQKRDY--GIVFQSYALFPNLTVADNIAYGL---------KNRGM-----GRAEVA 112
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
++ +++D GL E + P LSGG+++RVAL + L +SP LLL
Sbjct: 113 ERVAELLDLVGLPGSERKY---------PG------QLSGGQQQRVALARALATSPGLLL 157
Query: 180 LDEPTNHLDA---ETIAW-MEKYLREYSGAVLMVTHD 212
LDEP + LDA E + + + R +MVTHD
Sbjct: 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194
Score = 71.6 bits (176), Expect = 5e-13
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+ I K + + ++S + G V ++GP+G GKTTL R++ G E +GTI+ G
Sbjct: 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64
Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
Q RD +L TV ++I+ G + E+ R + G
Sbjct: 65 GRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVA-ELLDLVG 123
Query: 430 GDQQQRI--GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+R G LSGGQ+ RV LA+ L + ++LLDEP + LD
Sbjct: 124 LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 85.9 bits (213), Expect = 2e-17
Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 38/218 (17%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65
+A + K FG +VL+DI+L + +LGP+G+GK+T+LRI+AG++ + +G
Sbjct: 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT 64
Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
A VG++ Q L TV +NI G+ +L R
Sbjct: 65 DVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGL----TVLPRRERPNA---------- 110
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
I +K LE VQ+A + PA LSGG+K+RVAL + L P +LL
Sbjct: 111 ----AAIKAKVTQLLEM-VQLAHLADRYPA------QLSGGQKQRVALARALAVEPQILL 159
Query: 180 LDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDR 213
LDEP LDA E W+ + E + VTHD+
Sbjct: 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197
Score = 74.7 bits (184), Expect = 5e-14
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 23/198 (11%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
IE I KS+ +++++S +P G +V ++GP+G+GKTTL R++ G E SG I
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 377 GETVCLSYVDQSRD----------SLEAEKTVWEDISGGDDIV----KLNGHEINSRAYC 422
G V S + +RD +L TV+++I+ G ++ + N I ++
Sbjct: 63 GTDV--SRL-HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQ 119
Query: 423 SAFNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
+ R + LSGGQ+ RV LA+ L ++LLDEP LD + L L
Sbjct: 120 LLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179
Query: 482 ----ENFAGCAVIISHDR 495
E +V ++HD+
Sbjct: 180 RQLHEELKFTSVFVTHDQ 197
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 85.2 bits (211), Expect = 4e-17
Identities = 90/409 (22%), Positives = 164/409 (40%), Gaps = 115/409 (28%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
L+K F K+VL +I+ + +GILG +GAGKS ++ ++ G+D+ + + V
Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII--YHV 63
Query: 72 GYLPQ----EPQ---------------------LDLSKTVKENIIEGVA----------H 96
+ E +LS ++ I + +A
Sbjct: 64 ALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG 123
Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS 156
+LD E + + +E + + D+I+ VQ++ H D
Sbjct: 124 DDTVLDNVLEALEEIGYEGKEAVGRAVDLIE---------MVQLSHRITHIARD------ 168
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
LSGGEK+RV L + L P L L DEPT LD +T + L E ++++ +H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 213 RYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVS 272
++++++ + ++ G+ I +G ++ A M E E+ ++ +E
Sbjct: 229 PEVIEDLSDKAIWLENGE-IKEEGTPD---EVVAVFM--EGVSEVEKECEVEVGEP---- 278
Query: 273 SPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYN--DR 330
+I+ + +SK Y DR
Sbjct: 279 --------------------------------------------IIKVRNVSKRYISVDR 294
Query: 331 LLI---DNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ DN+S ++ G I G++G +GAGKTTL +++ G P SG ++V
Sbjct: 295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343
Score = 64.1 bits (156), Expect = 9e-11
Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 62/272 (22%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES--PDSGTI- 374
IE K ++K ++ + ++ N+SF + G ++G++G +GAGK+ L +L G + P SG I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 375 -HVGETVCLSYVD-QSRD---------SLEAEKTVWEDISG------------------- 404
HV YV+ S+ +LE E+ + ++S
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 405 --GDDIVKLN--------GHEINSRAYCSAFNFKGGDQQQRIG----SLSGGQRGRVHLA 450
GDD V N G+E + + RI LSGG++ RV LA
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Query: 451 KILKSGGNVILLDEPTNDLDTETL----SALEDALENFAGCAVIISHDRMFLDRLATHIL 506
+ L + L DEPT LD +T +ALE+A++ V+ SH ++ L+ +
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
Query: 507 AFEGNGH----------VEWFEGNFEEYEKDK 528
E NG V F E EK+
Sbjct: 241 WLE-NGEIKEEGTPDEVVAVFMEGVSEVEKEC 271
Score = 63.3 bits (154), Expect = 1e-10
Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 29/216 (13%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG-----FTV 71
G K +D+++L GI+G +GAGK+T+ +I+AG+ + +GE + G T
Sbjct: 295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT- 353
Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE----KTEEEIAKLQDIID 127
+P D K I G+ H++ L + ++ N +E + +E+A+++ +I
Sbjct: 354 -----KPGPDGRGRAKRYI--GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVIT 406
Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
K + E + + ++ LS GE+ RVAL ++L+ P +++LDEPT +
Sbjct: 407 LKMVGFDEEKAEEILDKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458
Query: 188 DAETIAWMEKYL----REYSGAVLMVTHDRYFLDNV 219
D T + + E ++V+HD F+ +V
Sbjct: 459 DPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV 494
Score = 43.3 bits (102), Expect = 2e-04
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED----ALENFAGCAVIISHD 494
LS G+R RV LA++L +++LDEPT +D T + A E +I+SHD
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 495 ----RMFLDRLA 502
DR A
Sbjct: 488 MDFVLDVCDRAA 499
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 84.7 bits (210), Expect = 5e-17
Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSY 384
K Y D +D ++FK+ G + G +GPNGAGKTT RMLT P SGT V +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 385 VDQSRDSLE---AEKTVWEDISGGDDIV------KLNGHEINSRAYCSAFNFKGGDQQQR 435
+ R S+ +V ED++G +++ L E RA F+ G+ R
Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 436 -IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVII- 491
+G+ SGG R R+ +A L +V+ LDEPT LD T A+ D + G +++
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180
Query: 492 SHDRMFLDRLATHI 505
+H D+L I
Sbjct: 181 THYMEEADKLCDRI 194
Score = 83.6 bits (207), Expect = 1e-16
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 44/233 (18%)
Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGY 73
KV+G K +D +N G LGPNGAGK+T +R++ + + +G A +A GY
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA-----GY 55
Query: 74 -LPQEPQLDLSKTVKENIIEGVAHKQAILD-----RYNELMM----NYSEK-TEEEIAKL 122
+ +EP + V+ +I G+ + A +D R N MM + EE +L
Sbjct: 56 DVVREP-----RKVRRSI--GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEEL 108
Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
++ + L + AD + + SGG +RR+ + L+ PD+L LDE
Sbjct: 109 LELFE---LGE--------------AADRP-VGTYSGGMRRRLDIAASLIHQPDVLFLDE 150
Query: 183 PTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGKGI 232
PT LD T + Y+R +L+ TH D + + I +D G+ I
Sbjct: 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 83.5 bits (207), Expect = 1e-16
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 47/221 (21%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AGIDKE----YN 60
L+ +G K+ L +INL + ++GP+G GKST+LR + G+ E ++
Sbjct: 7 LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFD 66
Query: 61 GEAWLATGF-------TVGYLPQEPQLDLSKTVKENIIEGV-AHKQAILDRYNELMMNYS 112
G+ VG + Q+P ++ +NI G H I D+
Sbjct: 67 GQDIYDKKIDVVELRRRVGMVFQKPNP-FPMSIYDNIAYGPRLHG--IKDK--------- 114
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
K +EI ++ + LWD EV+ + LH A LSGG+++R+ + + L
Sbjct: 115 -KELDEIV--EESLKKAALWD---EVK---DRLHDSA-----LGLSGGQQQRLCIARALA 160
Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211
P++LLLDEPT+ LD +E+ ++E +++VTH
Sbjct: 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201
Score = 69.2 bits (170), Expect = 3e-12
Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 61/264 (23%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDS 371
IE + ++ Y ++ + N++ +P + +IGP+G GK+TL R L
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 372 GTIHV-GETVCLSYVDQSRDSLEAE--------------KTVWEDISGG----------- 405
G + G+ + D+ D +E +++++I+ G
Sbjct: 61 GKVLFDGQDI----YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKE 116
Query: 406 -DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458
D+IV+ L E+ R + SA LSGGQ+ R+ +A+ L
Sbjct: 117 LDEIVEESLKKAALWDEVKDRLHDSAL------------GLSGGQQQRLCIARALAVEPE 164
Query: 459 VILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGH-VE 515
V+LLDEPT+ LD +E+ ++ VI++H+ R++ AF +G VE
Sbjct: 165 VLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT-AFFYDGELVE 223
Query: 516 WFEGNFEE-YEKDKLSRSSRVLSG 538
G E+ + K R+ +SG
Sbjct: 224 --YGPTEQIFTNPKEKRTEDYISG 245
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 83.5 bits (207), Expect = 1e-16
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 55/222 (24%)
Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69
AGLS +G+++ LDD++ + P + +LGPNGAGKST+ ++ + G+ +A G
Sbjct: 5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA-GH 63
Query: 70 T-----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSE 113
+G + Q+P LDL +V++N+ + G++ +A E
Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEA------------RE 111
Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173
+ +A+L GL + + L+GG +RRV + + LL
Sbjct: 112 RIAALLARL-------GLAE---------------RADDKVRELNGGHRRRVEIARALLH 149
Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTH 211
P LLLLDEPT LD + A + ++R + +VL TH
Sbjct: 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH 191
Score = 78.5 bits (194), Expect = 4e-15
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+E G+S +Y R +D++SF + PG V ++GPNGAGK+TLF +LT G I V
Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDIS-GGDDIVKLNG------HEINSRAYCSAFNFKGG 430
R +L V++ + D V+ N H ++
Sbjct: 62 G---HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLA 118
Query: 431 DQQ------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
++ L+GG R RV +A+ L ++LLDEPT LD + +A+
Sbjct: 119 RLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 83.3 bits (206), Expect = 1e-16
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 37/228 (16%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
IE K + K ++ + ++ + ++ PG +V +IGP+G+GKTTL R + E P++GTI VG
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 378 ETVCLSYVDQSRDSLEAEK-----------------------TVWEDISGGDDIVKLNGH 414
+ +D +R SL +K TV E+I G IVK
Sbjct: 64 DIT----IDTAR-SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK 118
Query: 415 E---INSRAYCSAFNFKGG-DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
E +R + G R LSGGQ+ RV +A+ L VIL DEPT+ LD
Sbjct: 119 EEATARARELLAKVGLAGKETSYPR--RLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
Query: 471 TETLSALEDALENFAG---CAVIISHDRMFLDRLATHILAFEGNGHVE 515
E + + + + A VI++H+ F +A + + VE
Sbjct: 177 PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
Score = 72.9 bits (179), Expect = 2e-13
Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 61/273 (22%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-----------------IMA 53
L K F + VL I+L P + I+GP+G+GK+T+LR I
Sbjct: 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67
Query: 54 GIDKEYNGEAWLATGFT--VGYLPQEPQLDLSKTVKENIIEG-VAHKQAILDRYNELMMN 110
+ + + L VG++ Q L +TV ENIIEG V K
Sbjct: 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG------------ 115
Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
E EE A+ ++++ GL ET LSGG+++RVA+ +
Sbjct: 116 --EPKEEATARARELLAKVGLAGKETSYP---------------RRLSGGQQQRVAIARA 158
Query: 171 LLSSPDLLLLDEPTNHLDAETIAWMEKYLR---EYSGAVLMVTHDRYFLDNVTNWILEVD 227
L P+++L DEPT+ LD E + + +R + +++VTH+ F +V + + +D
Sbjct: 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD 218
Query: 228 RGKGIPYQGNYSAYLQMKAKRMAQENREEISRQ 260
+G+ I QG AK + + ++ +RQ
Sbjct: 219 QGR-IVEQG--------PAKALFADPQQPRTRQ 242
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 82.4 bits (204), Expect = 3e-16
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 49/214 (22%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
+SK +G + VL+ ++L + ++G +G GKST+LR++AG++ GE L G
Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE--LLAGTA 74
Query: 71 --------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122
+ Q+ +L K V +N+ G L + + + +A +
Sbjct: 75 PLAEAREDTRLMFQDARLLPWKKVIDNVGLG-------------LKGQWRDAALQALAAV 121
Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
GL D E PA +LSGG+K+RVAL + L+ P LLLLDE
Sbjct: 122 -------GLADRANE---------WPA------ALSGGQKQRVALARALIHRPGLLLLDE 159
Query: 183 PTNHLDAETIAWM----EKYLREYSGAVLMVTHD 212
P LDA T M E +++ VL+VTHD
Sbjct: 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Score = 64.7 bits (158), Expect = 6e-11
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 34/180 (18%)
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV 380
+SK Y +R +++ L +P G V V+G +G GK+TL R+L G E+P +G + G
Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP 75
Query: 381 CLSYVDQSR----DS-LEAEKTVWEDISGGDDIVKLNGH------------EINSRAYCS 423
+ +R D+ L K V +++ G L G + RA
Sbjct: 76 LAEAREDTRLMFQDARLLPWKKVIDNVGLG-----LKGQWRDAALQALAAVGLADRA--- 127
Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
+ +LSGGQ+ RV LA+ L ++LLDEP LD T ++D +E+
Sbjct: 128 ---------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIES 178
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 82.5 bits (204), Expect = 3e-16
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 27/184 (14%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392
+ L+F G ++ ++G NGAGK+TL L G P SG + + +D SR L
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP----LDYSRKGL 63
Query: 393 EAEK-----------------TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQ 433
+ V +D++ G + L+ E+ R A G G ++
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR-EALTAVGASGLRE 122
Query: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVII 491
+ LSGG++ RV +A + +V+LLDEPT LD + L G V+I
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVI 182
Query: 492 S-HD 494
S HD
Sbjct: 183 STHD 186
Score = 74.8 bits (184), Expect = 5e-14
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 48/214 (22%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE--------AWLATG 68
G +VL +N + + +LG NGAGKST+L + G+ + +G + G
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 69 FT-----VGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121
VG + Q+P QL + V +++ G +N E +
Sbjct: 63 LLERRQRVGLVFQDPDDQL-FAADVDQDVAFG--------------PLNLGLSEAEVERR 107
Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
+++ + + G L HC LSGGEK+RVA+ + PD+LLLD
Sbjct: 108 VREALTAVGASGLRER------PTHC---------LSGGEKKRVAIAGAVAMRPDVLLLD 152
Query: 182 EPTNHLD---AETIAWMEKYLREYSGAVLMVTHD 212
EPT LD E + + + LR V++ THD
Sbjct: 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 82.3 bits (204), Expect = 3e-16
Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 51/238 (21%)
Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
IE ++ Y L++D++S ++ PG V ++GP+G+GK+TL R+L G E+P+SG++
Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
Query: 376 VGETVCLSYVDQSR----------DSLEAEKTVWEDISGG-----DD---IVKLNGHEIN 417
+ L+ +D + +++E+I+GG D+ ++ G +
Sbjct: 512 Y-DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAED 570
Query: 418 SRA-------YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
RA S GG G+LSGGQR R+ +A+ L ++L DE T+ LD
Sbjct: 571 IRAMPMGMHTVISE----GG------GTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 471 TETLSALEDALENFAGCAVIISHDRMFLDRLAT-----HILAFEGNGHVEWFEGNFEE 523
T + + ++LE ++I+H RL+T I + V+ +G ++E
Sbjct: 621 NRTQAIVSESLERLKVTRIVIAH------RLSTIRNADRIYVLDAGRVVQ--QGTYDE 670
Score = 43.4 bits (103), Expect = 2e-04
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK 57
+LDD++L P + I+GP+G+GKST+LR++ G +
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504
Score = 37.2 bits (87), Expect = 0.010
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 155 TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193
+LSGG+++R+ + + L+ P +LL DE T+ LD T A
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 82.0 bits (203), Expect = 3e-16
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 40/207 (19%)
Query: 317 VIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
++E + + SY D + ++FK G +V ++GPNGAGK+TLF G P SG +
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 376 V-GETVCLSY--------------VDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420
+ GE + Y V Q+ D TV ED++ G + L+ E+ R
Sbjct: 61 IKGEP--IKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 421 YCSAFNFKGGDQQQRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ + +G LSGGQ+ RV +A IL +I+LDEPT+ LD
Sbjct: 119 K---------EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 471 TETLSALEDALE--NFAGCAVIIS-HD 494
S + L N G +IIS HD
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHD 196
Score = 60.9 bits (148), Expect = 7e-10
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 48/210 (22%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKST-------ILRIMAG---IDKE---YNGEAWLAT 67
L IN + +LGPNGAGKST IL+ +G I E Y+ ++ L
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 68 GFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
TVG + Q P QL + TV+E++ G +N EE ++++
Sbjct: 77 RKTVGIVFQNPDDQL-FAPTVEEDVAFGP--------------LNLGLSKEEVEKRVKEA 121
Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
+ + G+ E + H LSGG+K+RVA+ +L P++++LDEPT+
Sbjct: 122 LKAVGMEGFENKPP------H---------HLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 186 HLD---AETIAWMEKYLREYSGAVLMVTHD 212
LD A I + L + +++ THD
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTHD 196
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 82.2 bits (203), Expect = 3e-16
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 25/198 (12%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++E + ++KS++ + +D++S + G I ++G +G GK+TL RML G E P +G I +
Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-M 77
Query: 377 GETVCLSYVD----------QSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-----AY 421
+ V LS+V QS +L TV ++I+ G KL EI SR
Sbjct: 78 LDGVDLSHVPPYQRPINMMFQSY-ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL 136
Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE--- 478
F Q LSGGQR RV LA+ L ++LLDEP LD + ++
Sbjct: 137 VHMQEFAKRKPHQ----LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 479 -DALENFAGCAVIISHDR 495
D LE V+++HD+
Sbjct: 193 VDILERVGVTCVMVTHDQ 210
Score = 75.3 bits (185), Expect = 3e-14
Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 52/237 (21%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
L+K F + +DD++L+ Y +LG +G GKST+LR++AG ++ G+ L G +
Sbjct: 25 LTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML-DGVDL 83
Query: 72 GYLP----------QEPQLDLSKTVKENIIEGVAH----KQAILDRYNELMMNYSEKTEE 117
++P Q L TV++NI G+ K I R NE++
Sbjct: 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML--------- 134
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
+ +Q+ K H LSGG+++RVAL + L P L
Sbjct: 135 GLVHMQEFAKRKP---------------H---------QLSGGQRQRVALARSLAKRPKL 170
Query: 178 LLLDEPTNHLDAETIAWME----KYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
LLLDEP LD + M+ L +MVTHD+ + I ++RGK
Sbjct: 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 81.2 bits (201), Expect = 7e-16
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 61/220 (27%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------------------DKE 58
G K L I+ + I+GP+G+GKST+ R++ GI D+E
Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388
Query: 59 YNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE- 117
G+ +GYLPQ+ +L TV ENI A + EK E
Sbjct: 389 TFGK-------HIGYLPQDVEL-FPGTVAENI--------ARFGENAD-----PEKIIEA 427
Query: 118 -EIAKLQDIIDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
++A + ++I G +T + +LSGG+++R+AL + L
Sbjct: 428 AKLAGVHELILRLPDG---YDTVIGPGGA------------TLSGGQRQRIALARALYGD 472
Query: 175 PDLLLLDEPTNHLDAE-TIAWME--KYLREYSGAVLMVTH 211
P L++LDEP ++LD E A K L+ V+++TH
Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
Score = 78.2 bits (193), Expect = 5e-15
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 40/209 (19%)
Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
GH+ +E I + + +SF+L G + +IGP+G+GK+TL R++ G P SG+
Sbjct: 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 374 IHV-------------GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIV---------KL 411
+ + G+ + Y+ Q + TV E+I+ + KL
Sbjct: 375 VRLDGADLKQWDRETFGKHI--GYLPQDVELFPG--TVAENIARFGENADPEKIIEAAKL 430
Query: 412 NG-HEINSR---AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
G HE+ R Y + G +LSGGQR R+ LA+ L +++LDEP +
Sbjct: 431 AGVHELILRLPDGYDTVIGPGG-------ATLSGGQRQRIALARALYGDPKLVVLDEPNS 483
Query: 468 DLDTETLSALEDALENF---AGCAVIISH 493
+LD E AL +A++ V+I+H
Sbjct: 484 NLDEEGEQALANAIKALKARGITVVVITH 512
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 80.6 bits (200), Expect = 1e-15
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377
E ++ Y ++ +S ++P G + V+G NG GKTTL + L G SG+I + G
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 378 ETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY----- 421
E + ++YV Q R+ TV E++ G + +I Y
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIF-PRLTVEENLLTGLAALPRRSRKIPDEIYELFPV 120
Query: 422 CSAF-NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
+GGD LSGGQ+ ++ +A+ L + ++LLDEPT
Sbjct: 121 LKEMLGRRGGD-------LSGGQQQQLAIARALVTRPKLLLLDEPT 159
Score = 59.1 bits (144), Expect = 3e-09
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 63/238 (26%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGFT---- 70
+G +L ++L +LG NG GK+T+L+ + G+ +G T
Sbjct: 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP 69
Query: 71 -------VGYLPQE----PQLDLSKTVKENIIEGVA----HKQAILDRYNELMMNYSEKT 115
+ Y+PQ P+L TV+EN++ G+A + I D EL
Sbjct: 70 HERARAGIAYVPQGREIFPRL----TVEENLLTGLAALPRRSRKIPDEIYELF------- 118
Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
L++++ +G G LSGG+++++A+ + L++ P
Sbjct: 119 ----PVLKEMLGRRG--------------------GD----LSGGQQQQLAIARALVTRP 150
Query: 176 DLLLLDEPTNHLDAETIAWME---KYLREYSG-AVLMVTHDRYFLDNVTNWILEVDRG 229
LLLLDEPT + I + + LR G A+L+V F + + ++RG
Sbjct: 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 80.3 bits (199), Expect = 1e-15
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377
GI K++ +D++SF G + ++G NGAGK+TL ++L+G+ PD+G+I + G
Sbjct: 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG 65
Query: 378 ETVCLSYVDQSRDSLEA-------------EKTVWEDI-------SGGDDIVKLNGHEIN 417
+ + + +L A E TV E++ GG +N +N
Sbjct: 66 QEMRFAST---TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG----IVNRRLLN 118
Query: 418 SRAYCSAFNFKGGDQQQRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
A +Q + +G LS GQR V +AK L VI DEPT+
Sbjct: 119 YEA---------REQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169
Query: 468 DL---DTETLSALEDALENFAGCAVI-ISHDRM 496
L + E L + L G ++ +SH RM
Sbjct: 170 SLSAREIEQLFRVIRELRA-EGRVILYVSH-RM 200
Score = 61.9 bits (151), Expect = 5e-10
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 47/219 (21%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW------ 64
G+ K F K LDDI+ ++G NGAGKST+L+I++G + G
Sbjct: 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68
Query: 65 --------LATGFTVGYLPQEPQLDLSKTVKENIIEG-VAHKQAILDRYNELMMNYSEKT 115
LA G + Y QE L TV EN+ G + HK I++R L+ +
Sbjct: 69 RFASTTAALAAGVAIIY--QELHLVPEMTVAENLYLGQLPHKGGIVNR--RLLN---YEA 121
Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
E++ L ID +T ++ LS G+++ V + K L +
Sbjct: 122 REQLEHLGVDIDP------DTPLK----------------YLSIGQRQMVEIAKALARNA 159
Query: 176 DLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTH 211
++ DEPT+ L A I + + LR +L V+H
Sbjct: 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198
Score = 56.5 bits (137), Expect = 2e-08
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 29/207 (14%)
Query: 313 LGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
LG V + G+ L + +SF + G IVG+ G GAG++ L ++L G +G
Sbjct: 253 LGEVRLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308
Query: 373 TIHV-GETVCLSYV-------------DQSRDSLEAEKTVWEDI--------SGGDDIVK 410
+++ G+ + + D+ + + +V ++I ++
Sbjct: 309 QVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLIN 368
Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
N+ + + N K ++Q I +LSGG + + L + L VILLDEPT +D
Sbjct: 369 NRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
Query: 471 TETLSALEDALENFA--GCAVI-ISHD 494
+ + + A G AV+ +S D
Sbjct: 429 VGAKHEIYNVIYELAAQGVAVLFVSSD 455
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
I +LSGG +++ L + L ++LLDEPT +D
Sbjct: 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 80.1 bits (198), Expect = 1e-15
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 23/169 (13%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
+ K I+K + +IDNL+ + G +V ++GP+G GKTT+ R++ G E P G I +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 377 GETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAY------- 421
GE V + Q RD +L ++ E++ G ++ + E R
Sbjct: 67 GEDVTHRSI-QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD 125
Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ F + DQ +SGGQ+ RV LA+ L V+L DEP ++LD
Sbjct: 126 LAGFEDRYVDQ------ISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
Score = 50.9 bits (122), Expect = 9e-07
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62
++K FGS V+D++NL+ + +LGP+G GK+T+LR++AG++K G+
Sbjct: 12 ITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62
Score = 48.2 bits (115), Expect = 5e-06
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
+SGG+++RVAL + L+ P +LL DEP ++LDA M + +RE ++ L VTHD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196
Query: 213 RYFLDNVTNWILEVDRGK 230
+ V++ ++ +++GK
Sbjct: 197 QSEAFAVSDTVIVMNKGK 214
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 79.6 bits (197), Expect = 2e-15
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 51/226 (22%)
Query: 308 PVGKRLGHVVIEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
P + G+V E + I+ Y+ + LI+N S L PG V ++G +G+GK+T+ +++ G
Sbjct: 470 PSPRLSGYV--ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG 527
Query: 366 DESPDSGTI--------HVGETV---CLSYVDQS--------RDSLEAEKTVWEDISGGD 406
P SG I + V ++ VDQ RD+L T+W+
Sbjct: 528 LYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL----TLWDPTIPDA 583
Query: 407 DIVKLNG----H-EINSRAYCSAFNFKGGDQQQRI---GSLSGGQRGRVHLAKILKSGGN 458
D+V+ H I SR GG + +LSGGQR R+ +A+ L +
Sbjct: 584 DLVRACKDAAIHDVITSR--------PGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635
Query: 459 VILLDEPTNDLDTETLSALEDALENFAGCA-VIISHDRMFLDRLAT 503
+++LDE T+ LD ET ++D L GC +I++H RL+T
Sbjct: 636 ILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAH------RLST 674
Score = 61.5 bits (150), Expect = 5e-10
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 62/215 (28%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AWLAT 67
++++ +L+ P ++ ++G +G+GKSTI +++AG+ + ++GE LA
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553
Query: 68 GFTVGYLPQEPQLDLSKTVKENI-----------IEGVAHKQAILDRYNELMMNYSEKTE 116
+V + Q+ L TV++N+ + AI D
Sbjct: 554 --SVAMVDQDIFL-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHD-------------- 596
Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
I + E+ E G N LSGG+++R+ + + L+ +P
Sbjct: 597 -VITSRPG--------GYDAEL---AE------GGAN---LSGGQRQRLEIARALVRNPS 635
Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTH 211
+L+LDE T+ LD ET ++ LR ++V H
Sbjct: 636 ILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 79.4 bits (196), Expect = 2e-15
Identities = 114/520 (21%), Positives = 198/520 (38%), Gaps = 129/520 (24%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI----- 55
MA +I MAG+ K FG L +NL+ YP +LG NGAGKST++++++GI
Sbjct: 1 MATPYI-SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK 59
Query: 56 ------DKEYNG-EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM 108
+ YN + LA +G + QE + TV EN+ G + +
Sbjct: 60 GTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNI 116
Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168
+++ E A + + K DL+ +V +LS K+ + +
Sbjct: 117 IDWRE-MRVRAAMMLLRVGLK--VDLDEKVA----------------NLSISHKQMLEIA 157
Query: 169 KLLLSSPDLLLLDEPTNHLDAETIAWM---EKYLREYSGAVLMVTHDRYFLDNVTNWILE 225
K L+ ++++DEPT+ L + + ++ LR+ A++ ++H I
Sbjct: 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-------LAEIRR 210
Query: 226 V-DRGKGIPYQGNYSAYLQMK-----AKRMAQENREEISRQKAIERERDWIVSSPKARQS 279
+ DR Y MK M + D IV R+
Sbjct: 211 ICDR------------YTVMKDGSSVCSGMVS------------DVSNDDIVRLMVGREL 246
Query: 280 KSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFK 339
++ R + V V E + ++ DR + ++SF
Sbjct: 247 QN----------------RFNAMKEN---VSNLAHETVFEVRNVTS--RDRKKVRDISFS 285
Query: 340 LPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC-----------LSYVDQ 387
+ G I+G G G+G+T L L G + G I + G+ + ++Y+ +
Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 388 SRDSLEAEKTVWEDISGGDDI-----VKLNG--------HEINSRAYCSA----FNFKGG 430
SR + + + S ++ +K G HE++ + K
Sbjct: 346 SR----RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH 401
Query: 431 DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
Q I LSGG + +V ++K L VI+ DEPT +D
Sbjct: 402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441
Score = 64.0 bits (156), Expect = 9e-11
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
I GI KS+ + +++ + PG I ++G NGAGK+TL ++L+G P GTI +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 378 ET------------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVK-------LNGHEINS 418
+ + + Q S+ E TV E++ G + K ++ E+
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQEL-SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV 124
Query: 419 RAYCSAFNFKGG---DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL---DTE 472
RA + + G D +++ +LS + + +AK L VI++DEPT+ L + +
Sbjct: 125 RA--AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 473 TLSALEDALENFAGCAVIISH 493
L + + L V ISH
Sbjct: 183 YLFLIMNQLRKEGTAIVYISH 203
Score = 57.1 bits (138), Expect = 1e-08
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 24/203 (11%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
KKV DI+ S +G G G+G++ ++ + G+DK GE L P+ P
Sbjct: 277 KKV-RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL---NGKDISPRSP 332
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL---E 135
LD K I E R N N+S I++ KG L
Sbjct: 333 -LDAVKKGMAYITES--------RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEV 383
Query: 136 TEVQVAIE-----SLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
E + A +L C + NIT LSGG +++V + K L P++++ DEPT +D
Sbjct: 384 DEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443
Query: 191 TIAWMEKYLREYSG---AVLMVT 210
A + K +R+ + +LMV+
Sbjct: 444 AKAEIYKVMRQLADDGKVILMVS 466
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 79.6 bits (197), Expect = 2e-15
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 44/210 (20%)
Query: 11 GLSKVFGS-KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYNGEA 63
LSKV+ + K+ L +INL+ P + I+GP+GAGKST+LR + + G
Sbjct: 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65
Query: 64 WLATG--------FTVGYLPQEPQLDLSKTVKENIIEG-VAHK---QAILDRYNELMMNY 111
+G + Q L TV EN++ G + +K +++L R+
Sbjct: 66 ITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF------- 118
Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
+EE+ + ++ GL D + AD LSGG+++RVA+ + L
Sbjct: 119 ---SEEDKERALSALERVGLADKA----------YQRAD-----QLSGGQQQRVAIARAL 160
Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLRE 201
PDL+L DEP LD +T + YL+
Sbjct: 161 AQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Score = 78.9 bits (195), Expect = 3e-15
Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 47/251 (18%)
Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
++E + +SK Y N + + N++ + PG V +IGP+GAGK+TL R + P SG+I
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 376 V-GETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY 421
+ G + + + Q + L TV E++ L+G +
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYN-LIERLTVLENV--------LHGRLGYKPTW 111
Query: 422 CSAFN-FKGGDQQ----------------QRIGSLSGGQRGRVHLAKILKSGGNVILLDE 464
S F D++ QR LSGGQ+ RV +A+ L ++IL DE
Sbjct: 112 RSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 465 PTNDLDTETLSALEDALENFA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGN 520
P LD +T + D L+ G VII+ H + A I+ + G + F+G
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEI-VFDGA 229
Query: 521 FEEYEKDKLSR 531
E + + L
Sbjct: 230 PSELDDEVLRH 240
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 79.3 bits (196), Expect = 2e-15
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 39/180 (21%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+ + ++ Y + ++++LS LP G I +IGPNG GK+TL + +P SGT+ +G
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 378 ETV-----------CLSYVDQSRDSLEAEK-------------TVWEDISGGDD-IVK-- 410
+ L+ + Q + E ++W +S D+ V
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ IN A +R+ LSGGQR R LA +L V+LLDEPT LD
Sbjct: 123 MEQTRINHLA------------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
Score = 70.8 bits (174), Expect = 9e-13
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 54/227 (23%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
L+ +G+K++L+D++LS P KI ++GPNG GKST+L+ A + +G +L
Sbjct: 8 LTVGYGTKRILNDLSLSL-PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI 66
Query: 67 TGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR--YNELMMNYSEKTEE 117
+ + + LPQ TV+E + G R + L S +
Sbjct: 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYG---------RSPWLSLWGRLSAEDNA 117
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCP--ADGLNITSLSGGEKRRVALCKLLLSSP 175
V A+E AD +T LSGG+++R L +L
Sbjct: 118 R-------------------VNQAMEQTRINHLADRR-LTDLSGGQRQRAFLAMVLAQDT 157
Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHD-----RY 214
++LLDEPT +LD + + +RE + V+ V HD RY
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY 204
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 78.6 bits (194), Expect = 3e-15
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 54/210 (25%)
Query: 24 DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY------NGEAWLATG---FT---- 70
D + + I G +G+GK+T++R++AG+ + NG + F
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 71 --VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDS 128
+GY+ QE +L +V+ N+ G + + E + +L
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYG----------MKRARPSERRISFERVIEL------ 118
Query: 129 KGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
+ I L P LSGGEK+RVA+ + LLSSP LLL+DEP
Sbjct: 119 -----------LGIGHLLGRLPGR------LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 187 LD----AETIAWMEKYLREYSGAVLMVTHD 212
LD E + ++E+ E+ +L V+H
Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHS 191
Score = 66.3 bits (162), Expect = 2e-11
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 24/212 (11%)
Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GET-- 379
SK D L + F LP G+ + G +G+GKTTL R++ G PD G I + G T
Sbjct: 5 FSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62
Query: 380 -----VCLS-------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF 427
+ L YV Q L +V ++ G + + I+
Sbjct: 63 DSRKGIFLPPEKRRIGYVFQEA-RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI 121
Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALEN 483
G + G LSGG++ RV + + L S ++L+DEP LD E L LE
Sbjct: 122 -GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180
Query: 484 FAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
F + +SH + RLA ++ E +G V
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLE-DGRVA 211
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 78.3 bits (193), Expect = 4e-15
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 47/231 (20%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG-------- 68
GSK+ L++IN +++I ++GPNGAGKST+ R GI K +G L G
Sbjct: 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENI 73
Query: 69 ----FTVGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
VG + Q P + S TV+++I G + + E+T ++
Sbjct: 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN------------LGLDEETVAH--RVS 119
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
+ GL +L V H LSGGEK+RVA+ ++ P +L+LDEP
Sbjct: 120 SALHMLGLEELRDRVP------H---------HLSGGEKKRVAIAGVIAMEPQVLVLDEP 164
Query: 184 TNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
T LD E I ++ Y V+ TH + + ++I +D+G+
Sbjct: 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215
Score = 75.6 bits (186), Expect = 3e-14
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 22/238 (9%)
Query: 317 VIEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+IE + + SY+ + ++N++F P + VIGPNGAGK+TLFR G P SG++
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 376 V-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
+ GE + + V Q+ D TV +DI+ G + L+ + R SA
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRV-SSA 121
Query: 425 FNFKG-GDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482
+ G + + R+ LSGG++ RV +A ++ V++LDEPT LD + + L D L
Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 483 NFA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGNFEE-YEKDKLSRSSRV 535
+ G VI S H + +A +I + G + G EE + + L +
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMD-KGRIVA-YGTVEEIFLQPDLLARVHL 237
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 78.1 bits (193), Expect = 6e-15
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 36/210 (17%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216
LS GE R+ LC+ L+S PDLL+LDEP + LD + + + L + + +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL------- 188
Query: 217 DNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKA 276
+L ++R IP ++ L REEI + +V+
Sbjct: 189 ------VLVLNRFDEIPDFVQFAGVLA-DCTLAETGEREEI--------LQQALVAQLA- 232
Query: 277 RQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNL 336
S+ ++ E SA H P N I+ L + V+ SYNDR ++ NL
Sbjct: 233 -HSEQLEGVQLPEPDEPSARHALPANEPRIV-----LNNGVV-------SYNDRPILHNL 279
Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGD 366
S+++ PG ++GPNGAGK+TL ++TGD
Sbjct: 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309
Score = 48.5 bits (116), Expect = 4e-06
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 49/193 (25%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID--KEYNGEAWL-----ATG 68
+ + +L +++ P I+GPNGAGKST+L ++ G D + Y+ + L +G
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSG 328
Query: 69 FTV-------GYLPQEPQLD--LSKTVKENIIEG----VAHKQAILDRYNELMMNYSEKT 115
T+ GY+ LD +S +V+ I+ G + QA+ DR +L +
Sbjct: 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQW---- 384
Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
L L + + A H SLS G++R + + L+ P
Sbjct: 385 ---------------LDILGIDKRTADAPFH---------SLSWGQQRLALIVRALVKHP 420
Query: 176 DLLLLDEPTNHLD 188
LL+LDEP LD
Sbjct: 421 TLLILDEPLQGLD 433
Score = 35.0 bits (81), Expect = 0.050
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEA-E 395
S L G +G NG+GK+ L R L G+ S GE + +R S E +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLS-----GERQS-QFSHITRLSFEQLQ 76
Query: 396 KTV---WED-----ISGGDD-------IVKLNGHEINSRAYCSAFNFKGGD-QQQRIGSL 439
K V W+ +S G+D + + + +R A F +R L
Sbjct: 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYL 136
Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG 486
S G+ + L + L S ++++LDEP + LD + L + L +
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 77.7 bits (192), Expect = 8e-15
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 27/172 (15%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++E +GISKS++ + +I NL + G + ++GP+G GKTT+ R++ G E+PDSG I +
Sbjct: 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73
Query: 377 GETVCLSYVDQSRDSLEAEK----------------TVWEDISGGDDIVKLNGHEINSRA 420
Q + AE TV+E+++ G + K EI R
Sbjct: 74 D--------GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRV 125
Query: 421 YCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
A ++ Q++ LSGGQ+ RV +A+ + + V+LLDE + LD
Sbjct: 126 M-EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Score = 76.1 bits (188), Expect = 2e-14
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 54/232 (23%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
+ + + G+SK F K+V+ +++L+ + +LGP+G GK+T+LR++AG + +
Sbjct: 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS 68
Query: 61 GEAWLATGFTVGYLPQE--------------PQLDLSKTVKENIIEGVAHKQAILDRYNE 106
G L G + ++P E P + TV EN+ G
Sbjct: 69 GRIMLD-GQDITHVPAENRHVNTVFQSYALFPHM----TVFENVAFG------------- 110
Query: 107 LMMNYSEKT-EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRV 165
L M +KT EI +E V +E A LSGG+++RV
Sbjct: 111 LRM---QKTPAAEITPRV----------MEALRMVQLEEF---AQ-RKPHQLSGGQQQRV 153
Query: 166 ALCKLLLSSPDLLLLDEPTNHLDAETIAWME---KYL-REYSGAVLMVTHDR 213
A+ + +++ P +LLLDE + LD + M+ K L R+ + VTHD+
Sbjct: 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 77.3 bits (190), Expect = 8e-15
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 22/200 (11%)
Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD--S 371
G + I+ + +Y ++D+LS ++ G ++ +IG +G GKTTL R + G +
Sbjct: 4 GGIRIDH--LRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 372 GTIHVGETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
G I + + R +L V ++++ G K+ +I R +
Sbjct: 62 GRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADA 121
Query: 424 AFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT-------ETLS 475
GD + LSGG + R+ +A+ + +V+LLDEP + LD E ++
Sbjct: 122 LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181
Query: 476 ALEDALENFAGCAVIISHDR 495
AL + L + ++HD+
Sbjct: 182 ALHEELPELT--ILCVTHDQ 199
Score = 73.5 bits (180), Expect = 1e-13
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT- 70
L +G+ VLDD++L + ++G +G GK+T+LR +AG K +A
Sbjct: 11 LRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD 70
Query: 71 ----------VGYLPQEPQLDLSKTVKENIIEGV-AHKQAILDRYNELMMNYSEKTEEEI 119
+ L Q L V++N+ G+ A K D
Sbjct: 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD----------------- 113
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
I + L+ V + + H PA LSGG ++R+A+ + + PD+LL
Sbjct: 114 ------IAERVADALKL-VGLGDAAAHLPA------QLSGGMQQRIAIARAIAIEPDVLL 160
Query: 180 LDEPTNHLDA-------ETIAWMEKYLREYSGAVLMVTHDR 213
LDEP + LDA E IA + + L E + +L VTHD+
Sbjct: 161 LDEPLSALDANIRANMREEIAALHEELPELT--ILCVTHDQ 199
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 76.7 bits (189), Expect = 1e-14
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+E K +SK + + ++N+S +P + G++GPNGAGK+TL +M+TG P SG I
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII-- 58
Query: 378 ETVCLSYVDQSRDSLEA------EKTVWEDISGGDD--IVKLNGHEINSR--AYCSAFNF 427
+R L ++E+++ ++ + +SR + +
Sbjct: 59 ----FDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL 114
Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485
+++ S G + R+ +A L + +++LDEPTN LD + L + + +F
Sbjct: 115 -TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 486 GCAVII-SHDRMFLDRLATHI 505
G VI+ SH + +LA HI
Sbjct: 174 GITVILSSHILSEVQQLADHI 194
Score = 70.5 bits (173), Expect = 1e-12
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 40/201 (19%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE------YNGEAW 64
LSK FG + +++I+L+ ++ G+LGPNGAGKST+L+++ GI + ++G W
Sbjct: 5 NLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW 64
Query: 65 LATGF-TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
+G L + P L + T +EN+ + + ++ + +E+ +
Sbjct: 65 TRKDLHKIGSLIESPPLYENLTARENL------------KVHTTLLGLPDSRIDEVLNIV 112
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
D+ ++ S G K+R+ + LL+ P LL+LDEP
Sbjct: 113 DLTNT---------------------GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151
Query: 184 TNHLDAETIAWMEKYLREYSG 204
TN LD I + + +R +
Sbjct: 152 TNGLDPIGIQELRELIRSFPE 172
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 76.2 bits (188), Expect = 2e-14
Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 61/267 (22%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF- 69
G++ +G+ + L DI L + +LGP+GAGKS++LR++ ++ +G +A
Sbjct: 7 GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66
Query: 70 ----------------TVGYLPQEPQLDLSKTVKENIIE------GVAHKQAILDRYNEL 107
VG + Q+ L TV++N+IE G++ QA+
Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL------- 119
Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167
+ E+ + +L+ + + L LSGG+++RVA+
Sbjct: 120 -----ARAEKLLERLR-LKPYADRFPLH---------------------LSGGQQQRVAI 152
Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWIL 224
+ L+ P +LL DEPT LD E A + +RE + ++VTH+ + ++
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQ 251
++ G I QG+ S + Q + +
Sbjct: 213 YMENGH-IVEQGDASCFTQPQTEAFKN 238
Score = 60.8 bits (148), Expect = 9e-10
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 46/230 (20%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
I+ GI+ Y + +++ P G + ++GP+GAGK++L R+L E P SGT+++
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 377 GETVCLSYVDQSRDSLEAEK---------------TVWED-ISGGDDIVKLNGHEINSRA 420
G S + E + TV ++ I ++ L+ + +RA
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122
Query: 421 -----------YCSAF--NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
Y F + GG QQ RV +A+ L V+L DEPT
Sbjct: 123 EKLLERLRLKPYADRFPLHLSGGQQQ------------RVAIARALMMEPQVLLFDEPTA 170
Query: 468 DLDTETLSALEDALENFAGCA---VIISHDRMFLDRLATHILAFEGNGHV 514
LD E + + + A VI++H+ + A+ ++ E NGH+
Sbjct: 171 ALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME-NGHI 219
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 76.2 bits (188), Expect = 2e-14
Identities = 79/272 (29%), Positives = 126/272 (46%), Gaps = 47/272 (17%)
Query: 281 SKARIRSYEELVESAAHRH-PGNAQIIIPVGKRLGHVVIEAKGISKSY-NDRLLIDNLSF 338
+ ++ + E+ ++ P A I +G+ G V + +S SY N R ++++SF
Sbjct: 302 AAPKLEEFFEVEDAVPDVRDPPGA---IDLGRVKGAVEFD--DVSFSYDNSRQGVEDVSF 356
Query: 339 KLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSL----- 392
+ PG V ++GP GAGK+TL +L P SG I + G + +R SL
Sbjct: 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR----TVTRASLRRNIA 412
Query: 393 ----EA---EKTVWEDIS-GGDDIVKLNGHEINSRAYCSAF---NFKGGDQQ--QRIGSL 439
+A +++ ++I G D RA F G D +R L
Sbjct: 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472
Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN-------FAGCAVIIS 492
SGG+R R+ +A+ L +++LDE T+ LD ET + ++ AL+ F II+
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTF-----IIA 527
Query: 493 HDRMFLDRLATHILAFEGNGH-VEWFEGNFEE 523
H R+ R A IL F+ NG VE G+F+E
Sbjct: 528 H-RLSTVRNADRILVFD-NGRVVE--SGSFDE 555
Score = 57.3 bits (139), Expect = 1e-08
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 48/192 (25%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL------------RIMA-GIDKEYNGEA 63
S++ ++D++ P + I+GP GAGKST++ RI+ G D A
Sbjct: 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRA 405
Query: 64 WL----ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
L A F Q+ L ++++++NI G D +E M +E
Sbjct: 406 SLRRNIAVVF------QDAGL-FNRSIEDNIRVGRP------DATDEEMRAAAE-----R 447
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
A+ D I+ K +T V G LSGGE++R+A+ + LL P +L+
Sbjct: 448 AQAHDFIERKPD-GYDTVV------------GERGRQLSGGERQRLAIARALLKDPPILI 494
Query: 180 LDEPTNHLDAET 191
LDE T+ LD ET
Sbjct: 495 LDEATSALDVET 506
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 75.9 bits (187), Expect = 2e-14
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP- 75
G + LD++N + ++G +GAGKST L+++ GI+K G+ G + L
Sbjct: 14 GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN-GQDLTRLRG 72
Query: 76 -QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134
+ P L + +I G+ + + L+ ++T + I D
Sbjct: 73 REIPFL------RRHI--GMVFQD------HRLLS---DRTVYDNVAFPLRIIGVPPRDA 115
Query: 135 ETEVQVAIES--LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192
V A+E L A L + LSGGE++RVA+ + ++ P LLL DEPT +LD E
Sbjct: 116 NERVSAALEKVGLEGKAHALPMQ-LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174
Query: 193 AWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGK 230
+ + E++ VL+ THD ++ + L + RG+
Sbjct: 175 RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215
Score = 73.2 bits (180), Expect = 2e-13
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 317 VIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+I + +SK+Y + +DNL+F + G +V ++G +GAGK+T +++ G E P G I
Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60
Query: 375 HV-GETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420
G+ + + V Q L ++TV+++++ I+ + + N R
Sbjct: 61 RFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS-DRTVYDNVAFPLRIIGVPPRDANERV 119
Query: 421 YCSAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479
+ + + LSGG++ RV +A+ + ++L DEPT +LD E +
Sbjct: 120 SAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR 179
Query: 480 ALENF--AGCAVII-SHDRMFLDRLATHILAFE 509
E F G V++ +HD ++ L
Sbjct: 180 LFEEFNRRGTTVLVATHDINLVETYRHRTLTLS 212
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 74.9 bits (184), Expect = 4e-14
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 37/236 (15%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
L FG +VLD +NL + ++GP+G+GKST+LR+ + + Y EA ++
Sbjct: 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP-EARVSG--- 63
Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNE-------------LMMNYSEKTEE 117
E LD K ++IE Q + N L +N K+++
Sbjct: 64 ------EVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 118 EI-AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
E+ +++ ++ LWD EV+ + L PA LSGG+++R+ + + L P+
Sbjct: 118 ELQERVRWALEKAQLWD---EVK---DRLDAPA-----GKLSGGQQQRLCIARALAFQPE 166
Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230
+LL DEPT +LD E A +E E +++VTH +++++ + +G+
Sbjct: 167 VLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQ 222
Score = 57.6 bits (139), Expect = 7e-09
Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 22/184 (11%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DESPDS 371
IE + + S+ ++D ++ ++P I ++GP+G+GK+TL R+ E+ S
Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62
Query: 372 GTIHV-GETVCLSYVDQSRDSLE---------AEKTVWEDISGGDDIVKL--NGHEINSR 419
G +++ G+ + V + R ++ +++E+++ G + +L + E+ R
Sbjct: 63 GEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQER 122
Query: 420 AYCSAFNFKGGDQ-QQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
+ + D+ + R+ G LSGGQ+ R+ +A+ L V+L DEPT +LD E
Sbjct: 123 VRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT 182
Query: 475 SALE 478
+ +E
Sbjct: 183 AKIE 186
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 74.5 bits (184), Expect = 6e-14
Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 51/258 (19%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG---------ID----KEYNGEAWL 65
K + +N + +I ++GP+GAGK+++L + G I+ +E + E+W
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWR 422
Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
+ ++ Q PQL T+++N++ + + A ++ + + N A + +
Sbjct: 423 KH---LSWVGQNPQL-PHGTLRDNVL--LGNPDASDEQLQQALEN---------AWVSEF 467
Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
+ L+T + G LS G+ +R+AL + LL LLLLDEPT
Sbjct: 468 LPLLPQ-GLDTPI------------GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTA 514
Query: 186 HLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNW--ILEVDRGKGIPYQGNYSAY 241
LDA + + + L S LMVTH L+++ W I + G+ I QG+Y+
Sbjct: 515 SLDAHSEQLVMQALNAASRRQTTLMVTHQ---LEDLAQWDQIWVMQDGQ-IVQQGDYAEL 570
Query: 242 LQMKA--KRMAQENREEI 257
Q + +EEI
Sbjct: 571 SQAGGLFATLLAHRQEEI 588
Score = 65.6 bits (161), Expect = 3e-11
Identities = 67/266 (25%), Positives = 110/266 (41%), Gaps = 49/266 (18%)
Query: 289 EELVE--SAAHRHPGNAQIIIPVGKRLGHVVIEAKGIS-KSYNDRLLIDNLSFKLPPGGI 345
E LV HP + + V IEA+ + S + + L L+F LP G
Sbjct: 322 ESLVTFLETPLAHPQQGEKELASND---PVTIEAEDLEILSPDGKTLAGPLNFTLPAGQR 378
Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGET-----------VCLSYVDQSRDSLEA 394
+ ++GP+GAGKT+L L G P G++ + LS+V Q +
Sbjct: 379 IALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSWVGQ--NPQLP 435
Query: 395 EKTVWEDISGGDDIVKLNGHEINS---RAYCSAF--------NFKGGDQQQRIGSLSGGQ 443
T+ +++ G+ + ++ A+ S F + GDQ LS GQ
Sbjct: 436 HGTLRDNVLLGN--PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA---AGLSVGQ 490
Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVIISHDRMFLD 499
R+ LA+ L ++LLDEPT LD + + AL A ++++H L+
Sbjct: 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQ---LE 545
Query: 500 RLAT--HILAFEGNGHVEWFEGNFEE 523
LA I + V+ +G++ E
Sbjct: 546 DLAQWDQIWVMQDGQIVQ--QGDYAE 569
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 74.2 bits (182), Expect = 7e-14
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 15/188 (7%)
Query: 320 AKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE- 378
AK ++K+Y R +++++S + G IVG++GPNGAGKTT F M+ G D+G I + +
Sbjct: 6 AKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65
Query: 379 -TVCLSYVDQSRDS---LEAEKTVWEDISGGDDIV-------KLNGHEINSRAYCSAFNF 427
L ++R L E +++ +S D+++ L+ + RA F
Sbjct: 66 DISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125
Query: 428 KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-- 484
+ +G SLSGG+R RV +A+ L + ILLDEP +D ++ ++ +E+
Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 485 AGCAVIIS 492
+G V+I+
Sbjct: 186 SGLGVLIT 193
Score = 71.1 bits (174), Expect = 6e-13
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 53/221 (23%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ 65
L+K + ++V++D++L+ +G+LGPNGAGK+T ++ GI G +
Sbjct: 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL-----DRYNELMMNYSEK 114
+GYLPQE + +V +N++ + + + DR NELM
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELM------ 122
Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
E I L+D + SLSGGE+RRV + + L ++
Sbjct: 123 EEFHIEHLRDSMGQ---------------------------SLSGGERRRVEIARALAAN 155
Query: 175 PDLLLLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHD 212
P +LLDEP +D ++ +++ +LR+ VL+ H+
Sbjct: 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 74.3 bits (183), Expect = 8e-14
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 52/226 (23%)
Query: 11 GLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66
L K + K VL ++LS + I+G +G+GKST+L ++ G+D +GE
Sbjct: 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN 65
Query: 67 ---------------TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111
+G++ Q L T EN+ + L+
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL------------LIGKK 113
Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
S K +E A ++ +V + H P++ LSGGE++RVA+ + L
Sbjct: 114 SVKEAKERAY-----------EMLEKVGLEHRINHRPSE------LSGGERQRVAIARAL 156
Query: 172 LSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDR 213
++ P L+L DEPT +LD M + RE + + L+VTHD
Sbjct: 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202
Score = 72.8 bits (179), Expect = 2e-13
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 33/213 (15%)
Query: 317 VIEAKGISKSYNDRLL----IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
+++ + + K Y + L + +S + G IV ++G +G+GK+TL +L G ++P SG
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 373 TIHV-GETV-CLSYVDQSR------------DSLEAEKTVWEDISGGDDIVKLNGHEINS 418
+ G+++ LS ++++ L + T E+++ I K + E
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE 120
Query: 419 RAY--CSAFNFKGGDQQQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
RAY + RI LSGG+R RV +A+ L + +++L DEPT +LD
Sbjct: 121 RAYEMLEKVGLE-----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 473 TLSALEDAL----ENFAGCAVIISHDRMFLDRL 501
+ D + ++++HD +L
Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELAKKL 208
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 74.1 bits (182), Expect = 8e-14
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---AGIDK---EYNGEAWL 65
++K FG VLD +N S K+ ++GP+G+GKSTILRI+ ID+ + GE
Sbjct: 6 VTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65
Query: 66 ATGFTVGYLPQEPQLDLSKTVKENI------IEGVAHKQAILDRYNELMMNYSEKTEEEI 119
G L + L + ++ I HK + + ++ E
Sbjct: 66 HMPGRNGPLVPADEKHLRQ-MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE 124
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
+ +++D GL D ++ H PA LSGG+++RVA+ + L P ++L
Sbjct: 125 KRAMELLDMVGLAD---------KADHMPA------QLSGGQQQRVAIARALAMRPKVML 169
Query: 180 LDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
DE T+ LD E + + +R E+ +L+VTH+ F + + D+G+
Sbjct: 170 FDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGR 224
Score = 56.8 bits (137), Expect = 1e-08
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 40/254 (15%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
+ ++K + ++D L+F + G V +IGP+G+GK+T+ R+L E D G I V
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 377 GETVCLSYVDQSRD-------------------------SLEAEKTVWEDISGGDDIVK- 410
GE Y R+ +L KTV ++++ +V
Sbjct: 61 GEQ---LYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 411 LNGHEINSRAYCSAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTND 468
+ E RA + G D+ + + LSGGQ+ RV +A+ L V+L DE T+
Sbjct: 118 MARAEAEKRAM-ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176
Query: 469 LDT----ETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE- 523
LD E L+ + ++++H+ F A + F+ VE +G +E
Sbjct: 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE--QGKPDEI 234
Query: 524 YEKDKLSRSSRVLS 537
+ + K R+ LS
Sbjct: 235 FRQPKEERTREFLS 248
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 73.7 bits (181), Expect = 1e-13
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 36/197 (18%)
Query: 27 LSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT------VGYLPQ--EP 78
LS +G+LGPNGAGK+T+LR + G+ G +A +GY+PQ E
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV 138
D +V ++ G L R + A ++D + GL +L
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRR----------PCVADFAAVRDALRRVGLTELADR- 109
Query: 139 QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKY 198
+ LSGG+++RV + + L + P +LLLDEP LD T + +
Sbjct: 110 --------------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155
Query: 199 LREYSG---AVLMVTHD 212
E +G A+LM THD
Sbjct: 156 FIELAGAGTAILMTTHD 172
Score = 71.4 bits (175), Expect = 5e-13
Identities = 57/181 (31%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 338 FKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG------ETVCLSYVDQSRD- 390
G ++G++GPNGAGKTTL R + G P GT+ V + YV Q +
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 391 ----SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR----------I 436
+ TV +SG GH R C A D +R +
Sbjct: 61 AWDFPISVAHTV---MSG------RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV 111
Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCA---VIISH 493
G LSGGQR RV +A+ L + +V+LLDEP LD T L + AG ++ +H
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 494 D 494
D
Sbjct: 172 D 172
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 73.6 bits (181), Expect = 1e-13
Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 45/238 (18%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT----- 70
+GS +L DI+L+ ++K I+G +G+GKST+ +++ G + +GE L GF+
Sbjct: 485 YGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL-NGFSLKDID 542
Query: 71 -------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
+ YLPQEP + S ++ EN+ L+ +++EI
Sbjct: 543 RHTLRQFINYLPQEPYI-FSGSILENL----------------LLGAKENVSQDEIWAAC 585
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
+I + K D+E L +S+SGG+K+R+AL + LL+ +L+LDE
Sbjct: 586 EIAEIKD--DIENMPLGYQTELSEEG-----SSISGGQKQRIALARALLTDSKVLILDES 638
Query: 184 TNHLDAET---IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238
T++LD T I + L ++ V H R + ++ I+ +D GK I QG++
Sbjct: 639 TSNLDTITEKKI--VNNLLNLQDKTIIFVAH-RLSVAKQSDKIIVLDHGKIIE-QGSH 692
Score = 58.2 bits (141), Expect = 5e-09
Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 45/229 (19%)
Query: 318 IEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
I +S SY ++ ++S + ++G +G+GK+TL ++L G SG I +
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 377 GETVC-----------LSYVDQ----------------SRDSLEAEKTVWEDISGG---D 406
++Y+ Q +++++ ++ +W D
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE-IWAACEIAEIKD 592
Query: 407 DIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
DI + Y + + +G S+SGGQ+ R+ LA+ L + V++LDE T
Sbjct: 593 DIENM------PLGYQTELSEEGS-------SISGGQKQRIALARALLTDSKVLILDEST 639
Query: 467 NDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
++LDT T + + L N +I R+ + + + I+ + +E
Sbjct: 640 SNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 73.7 bits (181), Expect = 1e-13
Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 71/239 (29%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI---MAGIDKE---- 58
I ++ LS + KK L+ ++L FYP+ ++GP+G+GKST+LR M ++ E
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 59 ----YNGEAWLATGFTVGYLPQEPQLDLSK--------------TVKENIIEGV----AH 96
YNG Y P+ +DL K ++ EN++ G+
Sbjct: 65 GSIVYNGHNI--------YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIK 116
Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS 156
+ +LD E E+ + +WD EV+ + LH A G
Sbjct: 117 DKQVLD----------EAVEKSLK-------GASIWD---EVK---DRLHDSALG----- 148
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTH 211
LSGG+++RV + ++L +SP ++LLDEPT+ LD + +E+ L +Y+ +L+VT
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT--MLLVTR 205
Score = 60.9 bits (148), Expect = 8e-10
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 58/207 (28%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371
+++ +S YN + ++++S P I +IGP+G+GK+TL R + D +P+ +
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 372 GTIHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNG---- 413
G+I S D+++ K +++E++ G ++L G
Sbjct: 65 GSIVYNGHNIYS---PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG---LRLKGIKDK 118
Query: 414 -----------------HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456
E+ R + SA LSGGQ+ RV +A++L +
Sbjct: 119 QVLDEAVEKSLKGASIWDEVKDRLHDSAL------------GLSGGQQQRVCIARVLATS 166
Query: 457 GNVILLDEPTNDLDTETLSALEDALEN 483
+ILLDEPT+ LD + +E+ L
Sbjct: 167 PKIILLDEPTSALDPISAGKIEETLLG 193
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 73.5 bits (181), Expect = 1e-13
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 28/203 (13%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH- 375
+++ KGI K++ + + + PG ++ ++G NGAGK+T+ ++LTG + D+G+I
Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 376 VGETVCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVKLNGHEINSRAYC 422
+G+ V + + S EA + T+ E+I G + V G + Y
Sbjct: 64 LGKEVTFN---GPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA 120
Query: 423 SA------FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL-DTETLS 475
A N + + +G LS G++ V +AK+L VI++DEPT+ L DTET S
Sbjct: 121 EADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
Query: 476 ALEDALE-NFAGCA-VIISHDRM 496
E G V ISH R+
Sbjct: 180 LFRVIRELKSQGRGIVYISH-RL 201
Score = 67.3 bits (165), Expect = 1e-11
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 40/196 (20%)
Query: 309 VGKRL-----------GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357
VG++L G V ++ +S ++++SF L G I+GV G GAG+T
Sbjct: 238 VGRKLEDQYPRLDKAPGEVRLKVDNLSGPG-----VNDVSFTLRKGEILGVSGLMGAGRT 292
Query: 358 TLFRMLTGDESPDSGTIHV-GETVC-----------LSYV--DQSRDSLEAEKTVWEDIS 403
L ++L G SG + + G V + Y+ D+ RD L +V E++S
Sbjct: 293 ELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352
Query: 404 --GGDDIVKLNGHEINSRA-------YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILK 454
+ G + + FN K +Q IG LSGG + +V +A+ L
Sbjct: 353 LTALRYFSRAGGS-LKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM 411
Query: 455 SGGNVILLDEPTNDLD 470
+ V++LDEPT +D
Sbjct: 412 TRPKVLILDEPTRGVD 427
Score = 46.5 bits (111), Expect = 2e-05
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 26/107 (24%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EY 59
+ + G+ K F K L L+ YP + ++G NGAGKST+++++ GI Y
Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 60 NGEAWLATGFT---------VGYLPQE----PQLDLSKTVKENIIEG 93
G+ F +G + QE PQL T+ ENI G
Sbjct: 64 LGK---EVTFNGPKSSQEAGIGIIHQELNLIPQL----TIAENIFLG 103
Score = 40.0 bits (94), Expect = 0.002
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 37/182 (20%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE---- 77
++D++ + +G+ G GAG++ +++++ G +G L V PQ+
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 78 -----------PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
L L +VKEN+ L ++ S K +E + D I
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENM------SLTALRYFSRAG--GSLKHADEQQAVSDFI 379
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
L++++T P+ I LSGG +++VA+ + L++ P +L+LDEPT
Sbjct: 380 R---LFNIKT-----------PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425
Query: 187 LD 188
+D
Sbjct: 426 VD 427
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 72.8 bits (179), Expect = 2e-13
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 27/217 (12%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AW 64
Y GLS + VL++++LS + +LG +G GKST+ R++ G++ G +W
Sbjct: 12 HYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSW 71
Query: 65 LATGFTVGYLPQEPQLDLSKTVK---ENIIEGVAHKQAILDRYNELMMNYSEKTEEE-IA 120
G + L + + + ++ ++ I V ++ + + E + + + E +A
Sbjct: 72 R--GEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLA 129
Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
+ +++ + L D + P LSGG+ +RV L + L P LL+L
Sbjct: 130 RASEMLRAVDL-DDSVLDK-------RPP------QLSGGQLQRVCLARALAVEPKLLIL 175
Query: 181 DEPTNHLD----AETIAWMEKYLREYSG-AVLMVTHD 212
DE ++LD A I ++K L++ G A L +THD
Sbjct: 176 DEAVSNLDLVLQAGVIRLLKK-LQQQFGTACLFITHD 211
Score = 68.6 bits (168), Expect = 4e-12
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 309 VGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES 368
+ H + K ++ +++N+S L G V ++G +G GK+TL R+L G ES
Sbjct: 9 LSHHYAHGGLSGKHQHQT-----VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 369 PDSGTIHVGETVCLSYVDQSR-------------DSLEA---EKTVWEDISGG-DDIVKL 411
P G + L+ +++++ DS+ A KTV E I ++ L
Sbjct: 64 PSQGNVSWRGEP-LAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSL 122
Query: 412 N--GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469
+ + A + +R LSGGQ RV LA+ L +++LDE ++L
Sbjct: 123 DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182
Query: 470 D----TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
D + L+ + F + I+HD ++R ++ + VE
Sbjct: 183 DLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 72.2 bits (177), Expect = 3e-13
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 44/219 (20%)
Query: 26 NLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----ATGFT-----VGYLPQ 76
+L+ + I+GP+GAGKST+L ++AG + +G + TG V L Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK-TEEEIAKLQDIIDSKGLWDLE 135
E L TV++NI G ++ K E+ K+ D G+ D
Sbjct: 78 ENNLFAHLTVRQNIGLG---------------LHPGLKLNAEQQEKVVDAAQQVGIADY- 121
Query: 136 TEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AET 191
++ L P LSGG+++RVAL + L+ +LLLDEP + LD E
Sbjct: 122 ------LDRL--PE------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167
Query: 192 IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
+A +++ E +LMVTH + + I V +GK
Sbjct: 168 LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206
Score = 69.5 bits (170), Expect = 2e-12
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 16/204 (7%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386
Y L + G IV ++GP+GAGK+TL ++ G P SG+I V +
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 387 QSR--------DSLEAEKTVWEDISGG-DDIVKLNGHEINSRAYCSAFNFKGGDQQQRI- 436
R ++L A TV ++I G +KLN + + +A D R+
Sbjct: 68 YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADYLDRLP 126
Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIIS 492
LSGGQR RV LA+ L ++LLDEP + LD E L+ ++ ++++
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 493 HDRMFLDRLATHILAFEGNGHVEW 516
H +A+ I G ++
Sbjct: 187 HHLSDARAIASQIAVVS-QGKIKV 209
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 72.2 bits (177), Expect = 3e-13
Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 41/230 (17%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI--------- 51
+ ++ +Y + G++ +G L +INLS + I+GP+G GKST ++
Sbjct: 7 VMKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP 66
Query: 52 ---MAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM 108
+ G + YNG L + ++L K + +G Q+I D
Sbjct: 67 NVKLTG-EMNYNGSNILKGKVDL--------VELRKNIGMVFQKGNPFPQSIFDNVAYGP 117
Query: 109 MNYSEKTEEEIAKLQDIIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164
+ K ++ KLQ+I++ LWD EV+ + LH A SLSGG+++R
Sbjct: 118 RIHGTKNKK---KLQEIVEKSLKDVALWD---EVK---DRLHTQA-----LSLSGGQQQR 163
Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
+ + + L ++PD+LL+DEPT+ LD + +E+ + + +++VTH+
Sbjct: 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213
Score = 39.9 bits (93), Expect = 0.002
Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 48/236 (20%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML------------T 364
V + G++ Y + N++ +P + +IGP+G GK+T + L T
Sbjct: 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71
Query: 365 GDESPDSGTIHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVK 410
G+ + + I G+ D +E K +++++++ G I
Sbjct: 72 GEMNYNGSNILKGKV----------DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHG 121
Query: 411 L-NGHEINSRAYCSAFNFKGGDQ-----QQRIGSLSGGQRGRVHLAKILKSGGNVILLDE 464
N ++ S + D+ + SLSGGQ+ R+ +A+ L + +V+L+DE
Sbjct: 122 TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE 181
Query: 465 PTNDLDTETLSALEDAL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEW 516
PT+ LD + +E+ + E + VI++H+ R++ F VE
Sbjct: 182 PTSALDPVSTRKIEELILKLKEKYT--IVIVTHNMQQAARVSDQTAFFYMGELVEC 235
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 71.7 bits (176), Expect = 4e-13
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 32/190 (16%)
Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+E + ++ Y DR +D++S + PG V ++G +G+GK+TL ++ PDSG I
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI- 389
Query: 376 VGETVCLSYV---DQSRDSLEAE------------KTVWEDI--SGGDDIVKLNGHEINS 418
L D + SL + T+ +I + + +
Sbjct: 390 -----LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALA 444
Query: 419 RAYCSAF--NFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
AY F G IG LSGGQR R+ +A+ L +++LDE T+ LD E
Sbjct: 445 AAYAQDFVDKLPLGLDTP-IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503
Query: 473 TLSALEDALE 482
+ ++ ALE
Sbjct: 504 SERLVQAALE 513
Score = 50.1 bits (120), Expect = 1e-06
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 43/189 (22%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI-------------MAGIDKEYNGEAW 64
+ LD I+L P + ++G +G+GKST++ + + G D A
Sbjct: 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403
Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE--EIAKL 122
L V + Q+ L + T+ NI Y + E A
Sbjct: 404 LRR--QVALVSQDVVL-FNDTIANNI------------AYGRTEQADRAEIERALAAAYA 448
Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
QD +D L L+T + G N LSGG+++R+A+ + LL +L+LDE
Sbjct: 449 QDFVDKLPL-GLDTPI------------GENGVLLSGGQRQRLAIARALLKDAPILILDE 495
Query: 183 PTNHLDAET 191
T+ LD E+
Sbjct: 496 ATSALDNES 504
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 71.8 bits (176), Expect = 5e-13
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 48/220 (21%)
Query: 322 GISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381
G+SKSY ++SF L PG ++G++G +G+GK+TL L G +PD GT
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT------ 61
Query: 382 LSYVDQSRDSL------EAE-----KTVW------------EDISGGDDIVKL-----NG 413
Y+ +S L EAE +T W +S G +I +
Sbjct: 62 --YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR 119
Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSL----SGGQRGRVHLAKILKSGGNVILLDEPTNDL 469
H N RA + + RI L SGG + R+ +A+ L + ++ +DEPT L
Sbjct: 120 HYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179
Query: 470 DTETLSALEDALE----NFAGCAVIISHD----RMFLDRL 501
D + L D L + +I++HD R+ RL
Sbjct: 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRL 219
Score = 61.4 bits (149), Expect = 6e-10
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 27/215 (12%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA--TG 68
GLSK +G K D++ YP +GI+G +G+GKST+L +AG +G A +G
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67
Query: 69 FTVGY--LPQEPQLDLSKT----VKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122
+ L + + L +T V +N +G+ + + E +M + I
Sbjct: 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA 127
Query: 123 QDIIDSKGLWDLETEVQVA-IESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
W E E+ I+ L + SGG ++R+ + + L++ P L+ +D
Sbjct: 128 A------HDWLEEVEIDPTRIDDLP--------RAFSGGMQQRLQIARNLVTRPRLVFMD 173
Query: 182 EPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
EPT LD A + + +R+ AV++VTHD
Sbjct: 174 EPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 71.4 bits (175), Expect = 5e-13
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
IE K +S S + ++ ++S K G I ++GP+GAGK+TL +++ P G+I +
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 378 ETVCLSY-VDQSRDSLEA--------EKTVWEDISGGDDIVKLNGHE-INSRAYCSAFNF 427
+ V R + E TV ++I G L G + ++ Y S
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP---MLKGEKNVDVEYYLSIVGL 120
Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---TETLSALEDALENF 484
+ + +LSGG+ RV +A+ L + V+LLDEPT+ LD TE + L L+N
Sbjct: 121 NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180
Query: 485 AGCAVI-ISHD 494
VI I+H+
Sbjct: 181 MNLTVIWITHN 191
Score = 65.2 bits (159), Expect = 4e-11
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 48/239 (20%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-----------DKEYNGEAWLAT 67
K++L DI++ F A I+GP+GAGKST+++++ + + +
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75
Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
+G + Q+P L TVK+NI Y ++
Sbjct: 76 RRKIGMVFQQPHL-FEGTVKDNI------------EYGPML------------------- 103
Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
KG +++ E ++I L+ ++ +LSGGE +RV++ + L ++P++LLLDEPT+ L
Sbjct: 104 -KGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162
Query: 188 DAETIAWMEKY---LREYSG-AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYL 242
D + +E+ L+ V+ +TH+ + ++ +++G + Y Y +
Sbjct: 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 71.3 bits (175), Expect = 5e-13
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 47/206 (22%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81
L +NL+ I ++G +G GKST+L +++G+ + +G L G EP D
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE-----GKQITEPGPD 55
Query: 82 LS-----------KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130
TV+ENI V + ++ + S+ I +++ I G
Sbjct: 56 RMVVFQNYSLLPWLTVRENIALAV----------DRVLPDLSKSERRAI--VEEHIALVG 103
Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
L E+ LSGG K+RVA+ + L P +LLLDEP LDA
Sbjct: 104 L----------TEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148
Query: 191 TIAWMEKYL----REYSGAVLMVTHD 212
T +++ L E+ VLMVTHD
Sbjct: 149 TRGNLQEELMQIWEEHRVTVLMVTHD 174
Score = 60.6 bits (147), Expect = 1e-09
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQ---- 387
+ ++ + G + +IG +G GK+TL +++G P SG + + G+ + D+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 388 SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS---AFNFKGGDQQQRIGSLSGGQR 444
SL TV E+I+ D V + + RA A +R G LSGG +
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 445 GRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGC-AVIISHD 494
RV +A+ L V+LLDEP LD T L++ L ++++HD
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 71.2 bits (174), Expect = 7e-13
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI-------MAGID-- 56
I L+ +G K+ L DIN+ + ++G +G GKST LR +A ID
Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 57 -----KEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111
K+ + +A VG + Q+P + K++ ENI Y +
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNV-FVKSIYENI------------SYAPKLHGM 108
Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
+ +EE A + D + GL++ EV+ ++ N +LSGG+++R+ + + L
Sbjct: 109 IKNKDEEEALVVDCLQKVGLFE---EVKDKLKQ--------NALALSGGQQQRLCIARAL 157
Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
P LLLLDEPT+ LD + +E+ L+E S +++MVTH+
Sbjct: 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
Score = 46.2 bits (109), Expect = 2e-05
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVI 490
+Q +LSGGQ+ R+ +A+ L ++LLDEPT+ LD + +E+ L+ + ++
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196
Query: 491 ISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA 539
++H+ R+A + F +E+ E E +E K ++ LSGA
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESK-EFFENPKQEKTKAYLSGA 244
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 70.9 bits (174), Expect = 9e-13
Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 18/195 (9%)
Query: 317 VIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+IE + + Y D + LS +P G ++GPNGAGK+TL L G P G +
Sbjct: 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 376 V-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
V G V + V Q D TVW+D++ G + L+ E+ R +
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 425 FNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---TETLSALEDA 480
+ D + + LS GQ+ RV +A +L +VI+LDEP LD ETL + D
Sbjct: 124 KAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183
Query: 481 LENFAGCAVIIS-HD 494
L N G VI++ HD
Sbjct: 184 LHN-QGKTVIVATHD 197
Score = 59.8 bits (145), Expect = 2e-09
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 53/221 (23%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG-------------EAWLA 66
K L ++LS +K +LGPNGAGKST+L + GI G E W+
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78
Query: 67 TGFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
+ VG + Q+P Q+ S TV +++ G +N +E ++++
Sbjct: 79 S--KVGLVFQDPDDQV-FSSTVWDDVAFGP--------------VNMGLDKDEVERRVEE 121
Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
+ + +WD P LS G+K+RVA+ +L PD+++LDEP
Sbjct: 122 ALKAVRMWDFR----------DKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166
Query: 185 NHLD---AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNW 222
+LD ET+ + L V++ THD +D W
Sbjct: 167 AYLDPRGQETLMEILDRLHNQGKTVIVATHD---VDLAAEW 204
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 70.5 bits (173), Expect = 1e-12
Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 54/239 (22%)
Query: 13 SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV- 71
SK FG +VL +I+L+ + I+GP+G+GKST+LR + +++ +G+ + G V
Sbjct: 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVN 66
Query: 72 -------------GYLPQE----PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
G + Q+ P L T EN++ G + S++
Sbjct: 67 DPKVDERLIRQEAGMVFQQFYLFPHL----TALENVMFGPLRVRGA-----------SKE 111
Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
E+ A+ +L +V +A + H P++ LSGG+++RVA+ + L
Sbjct: 112 EAEKQAR-----------ELLAKVGLAERAHHYPSE------LSGGQQQRVAIARALAVK 154
Query: 175 PDLLLLDEPTNHLDAE---TIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
P L+L DEPT+ LD E + + + L E +++VTH+ F + V + ++ +D+G+
Sbjct: 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213
Score = 64.0 bits (156), Expect = 1e-10
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
+IE K +SK + ++ N+ + G +V +IGP+G+GK+TL R + E SG + V
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 377 -GETVCLSYVDQSRDSLEA-----------EKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
G V VD+ EA T E++ G V+ E +
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKE-EAEKQARE 119
Query: 425 FNFKGGDQQQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSA 476
K G +R LSGGQ+ RV +A+ L ++L DEPT+ LD E L
Sbjct: 120 LLAKVG-LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178
Query: 477 LEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHV 514
++D L VI++H+ F +++A+ ++ F G +
Sbjct: 179 MQD-LAEEGMTMVIVTHEIGFAEKVASRLI-FIDKGRI 214
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 70.0 bits (171), Expect = 2e-12
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
I + S +G KK + ++ + + + I+GP+G GK+T+LR + ++ G
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 66 ATGFTVGYLPQEPQLDLS---KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122
+ G +PQLD++ K V + +I D + K++ ++ ++
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 123 -QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
++ + LWD EV+ L+ P T LSGG+++R+ + + L P+++LLD
Sbjct: 123 VEESLKKAALWD---EVK---SELNKPG-----TRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 182 EPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234
EPT+ LD +EK L E S +++VTH+ + ++I + RG+ I Y
Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226
Score = 60.7 bits (147), Expect = 9e-10
Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 57/262 (21%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371
+IE + S Y ++ + N++ K+ I +IGP+G GKTTL R + D P
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 372 GTIHV-GETVCLSYVD----QSRDSLEAEK------TVWEDISGG------------DDI 408
G I+ G+ + +D + + + +K +++++++ G D I
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 409 VKLN----------GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458
V+ + E+N LSGGQ+ R+ +A+ L
Sbjct: 123 VEESLKKAALWDEVKSELNKPGT----------------RLSGGQQQRLCIARALAVEPE 166
Query: 459 VILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEW 516
VILLDEPT+ LD +E LE + VI++H+ R+A +I AF G +
Sbjct: 167 VILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYI-AFMYRGELIE 225
Query: 517 FEGNFEEYEKDKLSRSSRVLSG 538
+ E E+ K + L+G
Sbjct: 226 YGPTREIVERPKNKLTEEYLTG 247
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 69.4 bits (170), Expect = 2e-12
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 28/198 (14%)
Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
I GPNG GKS++ RI+ + Y G + Y+PQ P + L T+++ II +
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQII----Y 537
Query: 97 KQAILDRYNELMMNYSEKTEEEI---AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN 153
+ D S+K E+I +L I++ +G W A+ D ++
Sbjct: 538 PDSSEDMK---RRGLSDKDLEQILDNVQLTHILEREGGWS-------AV------QDWMD 581
Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDR 213
+ LSGGEK+R+A+ +L P +LDE T+ + + +M + RE+ + V+H R
Sbjct: 582 V--LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH-R 638
Query: 214 YFLDNVTNWILEVDRGKG 231
L ++L +D G+G
Sbjct: 639 KSLWKYHEYLLYMD-GRG 655
Score = 50.9 bits (122), Expect = 9e-07
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ 387
N +LI++LSF++P G + + GPNG GK++LFR+L G + L YV Q
Sbjct: 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQ 522
Query: 388 ----SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGS----- 438
+ +L ++ ++ D S +D+ + + + N + +R G
Sbjct: 523 RPYMTLGTLR-DQIIYPDSS--EDMKRRGLSDKDLEQILD--NVQLTHILEREGGWSAVQ 577
Query: 439 -----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISH 493
LSGG++ R+ +A++ +LDE T+ + + + F +SH
Sbjct: 578 DWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH 637
Query: 494 DRMFLDRLATHILAFEGNG 512
R L + ++L +G G
Sbjct: 638 -RKSLWKYHEYLLYMDGRG 655
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 69.3 bits (170), Expect = 2e-12
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 44/228 (19%)
Query: 318 IEAKGISKSY-----NDRLL--IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
+E + +SK++ L + N+S + G V + GP+GAGK+TL + L + PD
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 371 SGTI---HVGETV----------------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKL 411
SG I H G V + YV Q + + ++ + +
Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL--EVVAEPLLERG 119
Query: 412 NGHEI---NSRAYCSAFNFKGGDQQQRIGSL-----SGGQRGRVHLAKILKSGGNVILLD 463
E +R + N +R+ L SGG++ RV++A+ + ++LLD
Sbjct: 120 VPREAARARARELLARLNIP-----ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLD 174
Query: 464 EPTNDLDTETLSALEDALENF--AGCAVI-ISHDRMFLDRLATHILAF 508
EPT LD + + + G A+I I HD + +A ++
Sbjct: 175 EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222
Score = 67.8 bits (166), Expect = 6e-12
Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 73/256 (28%)
Query: 8 HMAGLSKVF-----GSKK--VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
+ LSK F G + VL +++L+ + + GP+GAGKST+L+ + +
Sbjct: 3 EVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS 62
Query: 61 G-------EAW--LATG----------FTVGY-------LPQEPQLDLSKTVKENIIE-G 93
G AW LA T+GY +P+ L++ V E ++E G
Sbjct: 63 GRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEV---VAEPLLERG 119
Query: 94 VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN 153
V + A + E +A+L I + LW L PA
Sbjct: 120 VPREAA------------RARARELLARLN--IPER-LWHLP------------PA---- 148
Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE--YSGAVLM-VT 210
+ SGGE++RV + + ++ +LLLDEPT LDA + + + E GA L+ +
Sbjct: 149 --TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIF 206
Query: 211 HDRYFLDNVTNWILEV 226
HD + V + +++V
Sbjct: 207 HDEEVRELVADRVMDV 222
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 69.4 bits (170), Expect = 2e-12
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS--- 388
++ NL+ + PG +G++GP+G+GK+TL ++L +P G + V V L+ D +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG-VDLAIADPAWLR 530
Query: 389 -------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF-----KGGDQQ--Q 434
++++ +++ ++I+ + H I++ A +F +G + + +
Sbjct: 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFE-HVIHAAKLAGAHDFISELPQGYNTEVGE 589
Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISH 493
+ +LSGGQR R+ +A+ L +++ DE T+ LD E+ + + + G VII
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649
Query: 494 DRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
R+ R I+ E E G EE
Sbjct: 650 HRLSTVRACDRIIVLEKGQIAE--SGRHEE 677
Score = 67.5 bits (165), Expect = 1e-11
Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 66/254 (25%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GIDKEYNGEAW 64
S +VL ++NL P IGI+GP+G+GKST+ +++ G+D AW
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528
Query: 65 LATGFTVGYLPQEPQLDLSKTVKENI--------IEGVAHKQAI---LDRYNELMMNYSE 113
L +G + QE L S+++++NI E V H + D +EL Y
Sbjct: 529 LRR--QMGVVLQENVL-FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGY-- 583
Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173
+ KG +LSGG+++R+A+ + L+
Sbjct: 584 ---------NTEVGEKG------------------------ANLSGGQRQRIAIARALVG 610
Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKG 231
+P +L+ DE T+ LD E+ A + + +RE V+++ H + I+ +++G+
Sbjct: 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDR-IIVLEKGQ- 668
Query: 232 IPYQGNYSAYLQMK 245
I G + L ++
Sbjct: 669 IAESGRHEELLALQ 682
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 69.2 bits (170), Expect = 2e-12
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 42/199 (21%)
Query: 26 NLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG---------FTVGYLPQ 76
+L+ ++ ILGP+GAGKST+L ++AG +G L V L Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136
E L TV +NI G+ L +N +++ KL I G+ DL
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPG---------LKLNAAQR-----EKLHAIARQMGIEDL-- 122
Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETI 192
+ L P LSGG+++RVAL + L+ +LLLDEP + LD E +
Sbjct: 123 -----LARL--PGQ------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169
Query: 193 AWMEKYLREYSGAVLMVTH 211
+ + +E +LMV+H
Sbjct: 170 TLVSQVCQERQLTLLMVSH 188
Score = 56.5 bits (137), Expect = 2e-08
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 31/163 (19%)
Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR------- 389
+ G V ++GP+GAGK+TL ++ G +P SG++ + + R
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 390 -DSLEAEKTVWEDIS-GGDDIVKLNG------HEINSRAYCSAFNFKGGDQQQRI-GSLS 440
++L + TV ++I G + +KLN H I + D R+ G LS
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------DLLARLPGQLS 131
Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
GGQR RV LA+ L ++LLDEP SAL+ AL
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEP--------FSALDPALRQ 166
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 69.1 bits (169), Expect = 2e-12
Identities = 70/268 (26%), Positives = 132/268 (49%), Gaps = 37/268 (13%)
Query: 280 KSKARIRSYEELVESAAHRH-PGNAQIIIPVGKRLGHVV--IEAKGISKSY-NDRLLIDN 335
+++A++ + +L +S R P +A L +V +E + I+ + N + +
Sbjct: 301 EARAKLEDFFDLEDSVFQREEPADA-------PELPNVKGAVEFRHITFEFANSSQGVFD 353
Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL-EA 394
+SF+ G V ++GP GAGKTTL +L P G I + + + ++ V +R+SL ++
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI-DGIDINTV--TRESLRKS 410
Query: 395 EKTVWEDISGGDDIVKLN---GHE-------INSRAYCSAFNF-----KGGDQQ--QRIG 437
TV++D + ++ N G E + +A +F G D +R
Sbjct: 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470
Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDR 495
LSGG+R R+ +A+ + +++LDE T+ LD ET + +++A++ II+H R
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH-R 529
Query: 496 MFLDRLATHILAFEGNGHVEWFEGNFEE 523
+ R A +L + +E +G+F+E
Sbjct: 530 LSTVRNADLVLFLDQGRLIE--KGSFQE 555
Score = 49.5 bits (118), Expect = 2e-06
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 26 NLSFYPDA--KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83
++SF A + I+GP GAGK+T++ ++ + TVG + + +D++
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILID-GIDIN 400
Query: 84 KTVKENI---IEGVAHKQAILDRY--NELMMNYSEKTEEEI------AKLQDIIDSKGLW 132
+E++ I V + +R + + T+EE+ A D I +
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKR-SN 459
Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191
+T V G LSGGE++R+A+ + +L + +L+LDE T+ LD ET
Sbjct: 460 GYDTLV------------GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 69.1 bits (170), Expect = 2e-12
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 46/189 (24%)
Query: 317 VIEAKGISKSY----NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
+IE K ISK + ++N+S +P G I GVIG +GAGK+TL R + E P SG
Sbjct: 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 373 TIHVG--ETVCLSYVD--QSRDS---------LEAEKTVWEDISGGDDIVKLNGHEINSR 419
+ V + LS + ++R L + +TV+++++ ++ EI +R
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR 120
Query: 420 ---------------AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDE 464
Y + LSGGQ+ RV +A+ L S V+L DE
Sbjct: 121 VTELLELVGLSDKADRYPA--------------QLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 465 PTNDLDTET 473
T+ LD T
Sbjct: 167 ATSALDPAT 175
Score = 62.5 bits (153), Expect = 2e-10
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 63/229 (27%)
Query: 11 GLSKVF--GSKKV--LDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
+SKVF G + + L++++L P +I G++G +GAGKST++R + +++ +G +
Sbjct: 6 NISKVFPQGGRTIHALNNVSLHI-PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64
Query: 66 ---------ATGFT-----VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNE 106
+G + Q L S+TV +N+ + G K I R E
Sbjct: 65 DGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTP-KAEIKARVTE 123
Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVA 166
L+ E+ L D D PA LSGG+K+RVA
Sbjct: 124 LL---------ELVGLSDKADRY------------------PA------QLSGGQKQRVA 150
Query: 167 LCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTH 211
+ + L S+P +LL DE T+ LD T + + L RE ++++TH
Sbjct: 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 69.3 bits (169), Expect = 2e-12
Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 35/252 (13%)
Query: 315 HVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR----MLTGDESPD 370
+I + ++K++N + + + G +V ++GP+G+GK+TL R ++TGD+S
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61
Query: 371 SGTIHVGETV-----CLSYVDQSRD---------SLEAEKTVWEDISGG--------DDI 408
S +G TV + +SR +L +V E++ G
Sbjct: 62 SHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121
Query: 409 VKLNGHEINSRAYCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
E RA A G QR+ +LSGGQ+ RV +A+ L VIL DEP
Sbjct: 122 FSWFTREQKQRAL-QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180
Query: 467 NDLDTET----LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFE 522
LD E+ + L D +N V+ H + R I+A GHV +++G+ +
Sbjct: 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHV-FYDGSSQ 238
Query: 523 EYEKDKLSRSSR 534
+++ ++ R
Sbjct: 239 QFDNERFDHLYR 250
Score = 52.7 bits (126), Expect = 2e-07
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 41/220 (18%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
L+K F + L ++L+ + + +LGP+G+GKST+LR ++G L TG
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG----------LITGDKS 59
Query: 72 GYLPQEPQLDLSKTVK------ENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
L +TV+ +I + A+ I ++N ++N E L
Sbjct: 60 ---AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN--LVNRLSVLEN---VLIGA 111
Query: 126 IDSKGLWDL------ETEVQVAIESL------HCPADGLNITSLSGGEKRRVALCKLLLS 173
+ S W + Q A+++L H +++LSGG+++RVA+ + L+
Sbjct: 112 LGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ--RVSTLSGGQQQRVAIARALMQ 169
Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVT 210
++L DEP LD E+ + LR+ + G ++VT
Sbjct: 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 68.6 bits (168), Expect = 3e-12
Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 52/215 (24%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-TGFT----- 70
G K+L++I+ S I GP+G GKST+L+I+A + +G +
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 71 -----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
V Y Q P L TV +N+I + + A D
Sbjct: 78 IYRQQVSYCAQTPTL-FGDTVYDNLI---------------FPWQIRNQQPDP-AIFLDD 120
Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
++ L + NI LSGGEK+R++L + L P +LLLDE T+
Sbjct: 121 LERFAL-PDTILTK-------------NIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166
Query: 186 HLDA-------ETIAWMEKYLREYSGAVLMVTHDR 213
LD E I +Y+RE + AVL VTHD+
Sbjct: 167 ALDESNKHNVNEII---HRYVREQNIAVLWVTHDK 198
Score = 57.8 bits (140), Expect = 6e-09
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 17/194 (8%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
+++ + + D +++N+SF L G + GP+G GK+TL +++ SP SGT+
Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66
Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425
GE + +SY Q+ +L + TV++++ I F
Sbjct: 67 EGEDISTLKPEIYRQQVSYCAQT-PTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERF 124
Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485
+ I LSGG++ R+ L + L+ V+LLDE T+ LD + + + +
Sbjct: 125 ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184
Query: 486 ---GCAVI-ISHDR 495
AV+ ++HD+
Sbjct: 185 REQNIAVLWVTHDK 198
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 68.6 bits (168), Expect = 4e-12
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 42/208 (20%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AG---ID----KEYNGEA 63
VL + + +P + ++GP+G+GKST+ ++ G +D +Y+
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-HH 551
Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
+L V + QEP L S +V+ENI G L + + + K A
Sbjct: 552 YLHR--QVALVGQEPVL-FSGSVRENIAYG-------LTDTPDEEIMAAAKA----ANAH 597
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
D I + +TEV G + LSGG+K+R+A+ + L+ P +L+LDE
Sbjct: 598 DFI-MEFPNGYDTEV------------GEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 184 TNHLDAETIAWMEKYLREYSGAVLMVTH 211
T+ LDAE +++ S VL++ H
Sbjct: 645 TSALDAECEQLLQESRSRASRTVLLIAH 672
Score = 67.4 bits (165), Expect = 8e-12
Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 27/233 (11%)
Query: 317 VIEAKGISKSY---NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
+IE + +S SY D ++ L+F L PG +V ++GP+G+GK+T+ +L P G
Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 374 IHVGETVCLS-----YVDQSRDSLEAEKTVW-----EDISGGDDIVKLNGHEINSRA-YC 422
+ + + V L Y+ + + E ++ E+I+ G EI + A
Sbjct: 538 VLL-DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT--DTPDEEIMAAAKAA 594
Query: 423 SAFNFKGGDQQ---QRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
+A +F +G LSGGQ+ R+ +A+ L V++LDE T+ LD E
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654
Query: 476 ALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528
L++ + A V++ R+ A IL + VE G ++ +D+
Sbjct: 655 LLQE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE--MGTHKQLMEDQ 704
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 68.4 bits (168), Expect = 4e-12
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSY--VDQ 387
RL LS ++ G I+ ++GPNGAGK+TL + G P SG+I ++ +
Sbjct: 11 RLG--PLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAEL 67
Query: 388 SR--------DSLEAEKTVWE--DISGGDDIVKLNGHEINSRAY--CSAFNFKGGDQQQR 435
+R + V++ + D K + S A D+ R
Sbjct: 68 ARHRAYLSQQQTPPFAMPVFQYLTLHQPD---KTRTEAVASALNEVAEALGL--DDKLGR 122
Query: 436 -IGSLSGGQRGRVHLAKI-------LKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485
+ LSGG+ RV LA + + G ++LLDEP N LD +AL+ L
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 486 GCAVIIS-HD 494
G AV++S HD
Sbjct: 183 GIAVVMSSHD 192
Score = 67.3 bits (165), Expect = 1e-11
Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 54/198 (27%)
Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
++GPNGAGKST+L MAG+ +G +P S +A
Sbjct: 27 LVGPNGAGKSTLLARMAGL-LPGSGSI---------QFAGQPLEAWSAA-------ELAR 69
Query: 97 KQAIL----------DRYNELMMNYSEKTEEEIAK--LQDIIDSKGLWDLETEVQVAIES 144
+A L + L ++ +KT E L ++ ++ GL D
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK---------- 119
Query: 145 LHCPADGLNITSLSGGEKRRVALCKLLL-----SSPD--LLLLDEPTNHLDAETIAWMEK 197
L + LSGGE +RV L ++L +P LLLLDEP N LD A +++
Sbjct: 120 LGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDR 174
Query: 198 YLREYS---GAVLMVTHD 212
L E AV+M +HD
Sbjct: 175 LLSELCQQGIAVVMSSHD 192
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 68.4 bits (167), Expect = 5e-12
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 32/194 (16%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-----HVGETVC 381
Y+D+ L+ +SF LP GG++ + G NGAGKTTL +++ G +P+ G I + + +C
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC 70
Query: 382 LSYVDQ-----SRDSLEAEKTVWEDI-------SGGDDIVKLNGHEINSRAYCSAFNFKG 429
+Y Q R + T+ E+ G I +L C F+
Sbjct: 71 -TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITEL----------CRLFSL-E 118
Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AG 486
G LS GQ+ +V L ++ S + LLDEP LD +L + ++ G
Sbjct: 119 HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 487 CAVIISHDRMFLDR 500
++ SH + L++
Sbjct: 179 AVLLTSHQDLPLNK 192
Score = 53.0 bits (127), Expect = 2e-07
Identities = 64/219 (29%), Positives = 90/219 (41%), Gaps = 50/219 (22%)
Query: 21 VLDDINLSF-YPDAKI-----------GIL---GPNGAGKSTILRIMAGIDKEYNGEAWL 65
+LD I L F Y D + G+L G NGAGK+T+L+++AG+ GE
Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE--- 57
Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAI----LDRYNELMMNYSEKTEEEIAK 121
+ + Q + DL K+ V H+ I R N L + I +
Sbjct: 58 -----ILFERQSIKKDLCTYQKQLCF--VGHRSGINPYLTLRENCLYDIHFSPGAVGITE 110
Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
L + + L D GL LS G+KR+VAL +L +S L LLD
Sbjct: 111 LCRLFSLEHLIDYPC--------------GL----LSSGQKRQVALLRLWMSKAKLWLLD 152
Query: 182 EPTNHLDA---ETIAWMEKYLREYSGAVLMVTHDRYFLD 217
EP LD TI + R GAVL+ +H L+
Sbjct: 153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 68.4 bits (168), Expect = 5e-12
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 58/227 (25%)
Query: 320 AKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV--- 376
+G++K Y R ++SF L PG ++G++G +G+GKTTL L+ +PD+G +H
Sbjct: 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68
Query: 377 -GETVCL----------------SYVDQS-RDSLEAEKTVWEDISGGDDIV-KLNG---- 413
G+ L +V Q RD L + +S G +I +L
Sbjct: 69 DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQ------VSAGGNIGERLMAVGAR 122
Query: 414 HEINSRAYCSAFNFKGGDQQQRI-----------GSLSGGQRGRVHLAKILKSGGNVILL 462
H + RA GD +R+ + SGG + R+ +A+ L + ++ +
Sbjct: 123 HYGDIRA-------TAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175
Query: 463 DEPTNDLDTETLSALEDALENFA---GCAVII-SHD----RMFLDRL 501
DEPT LD + L D L G AV+I +HD R+ RL
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL 222
Score = 43.4 bits (103), Expect = 1e-04
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54
GL+K++G +K D++ YP +GI+G +G+GK+T+L ++
Sbjct: 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54
Score = 41.1 bits (97), Expect = 7e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 155 TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVT 210
T+ SGG ++R+ + + L++ P L+ +DEPT LD A + LR E AV++VT
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 211 HD 212
HD
Sbjct: 210 HD 211
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 68.2 bits (166), Expect = 6e-12
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 50/219 (22%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE-----YNGEAWLA--TG 68
F K VLD +++ F A ++GP G+GK+T LR + ++ + Y+G+ L +
Sbjct: 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90
Query: 69 FT----------VGYLPQEPQLDLSKTVKENIIEGV-AHKQAILDRYNELMMNYSEKTEE 117
F VG L Q P ++ +N++ GV AHK + +
Sbjct: 91 FNYRDVLEFRRRVGMLFQRPN-PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ-------- 141
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSP 175
A+L ++ GLWD A++ D L+ + LSGG+++ + L + L +P
Sbjct: 142 --ARLTEV----GLWD-------AVK------DRLSDSPFRLSGGQQQLLCLARTLAVNP 182
Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
++LLLDEPT+ LD T +E+++R + V++VTH+
Sbjct: 183 EVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221
Score = 55.5 bits (133), Expect = 4e-08
Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 36/250 (14%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+ A ++ + + ++D +S P + ++GP G+GKTT R L SG + G
Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81
Query: 378 ETVCLS-YVDQSRDSLEAEKTVWE--------DISGGDDIVK-LNGHEINSRAYCSAFNF 427
+ + + RD LE + V +S D+++ + H++ R F
Sbjct: 82 DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRK-----EF 136
Query: 428 KGGDQQQ--RIG--------------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
+G Q + +G LSGGQ+ + LA+ L V+LLDEPT+ LD
Sbjct: 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196
Query: 472 ETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE-YEKDK 528
T +E+ + + A +I++H+ R++ F VE EG E+ + K
Sbjct: 197 TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE--EGPTEQLFSSPK 254
Query: 529 LSRSSRVLSG 538
+ ++R ++G
Sbjct: 255 HAETARYVAG 264
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 68.0 bits (166), Expect = 6e-12
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETV-------CLSYVD 386
+ SF +P G I ++G NG+GK+TLF+ L G SG I + G+ ++YV
Sbjct: 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84
Query: 387 QSRDSLEAEKTVWEDISGGDDIVKLN--GH-------EINSRAYCSAFNFKGGDQQQR-- 435
QS E+ W +D+V + GH + R +A + + R
Sbjct: 85 QS------EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138
Query: 436 -IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVIIS 492
IG LSGGQ+ RV LA+ + G VILLDEP +D +T + + L G +++S
Sbjct: 139 QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198
Score = 46.4 bits (110), Expect = 2e-05
Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 37/195 (18%)
Query: 31 PDAKIGIL-GPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--------VGYLPQEPQLD 81
P I L G NG+GKST+ + + G + +G+ + T V Y+PQ ++D
Sbjct: 31 PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 82 LSKTVKENIIEGVAHKQAILDRYNEL-MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
S V ++E V ++ RY + + ++K + +I + + + +
Sbjct: 91 WSFPV---LVEDVV----MMGRYGHMGWLRRAKKRDRQI--VTAALARVDMVEFRHR--- 138
Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200
I LSGG+K+RV L + + ++LLDEP +D +T A + LR
Sbjct: 139 ------------QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 201 EY--SGAVLMV-THD 212
E G ++V TH+
Sbjct: 187 ELRDEGKTMLVSTHN 201
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 67.8 bits (166), Expect = 6e-12
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 29/195 (14%)
Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC------ 381
D+ +D L+ + PG V ++GP+GAGK+TLF++L P SG I + G +
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 382 ----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ---- 433
++ V Q D + +V E+I G E +RA A F +
Sbjct: 412 LRARMALVPQ--DPVLFAASVMENIRYGRPDATDEEVEAAARA-AHAHEFISALPEGYDT 468
Query: 434 ---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CA 488
+R +LSGGQR R+ +A+ + ++LLDE T+ LD E+ ++ ALE
Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTT 528
Query: 489 VIISHDRMFLDRLAT 503
+II+H RLAT
Sbjct: 529 LIIAH------RLAT 537
Score = 61.3 bits (149), Expect = 7e-10
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 40/185 (21%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GIDKEYNGEAWLA 66
LD +NL+ P + ++GP+GAGKST+ +++ G+D A L
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
+ +PQ+P L + +V ENI RY + T+EE+
Sbjct: 414 ARMAL--VPQDPVL-FAASVMENI------------RYGRP-----DATDEEVEAAARAA 453
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
+ + E G +LSGG+++R+A+ + +L +LLLDE T+
Sbjct: 454 HAHEF------ISALPEGYDTYL-GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSA 506
Query: 187 LDAET 191
LDAE+
Sbjct: 507 LDAES 511
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 67.7 bits (165), Expect = 6e-12
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 57/233 (24%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGIDKE 58
I + LS +G K+ ++DI++ A ++GP+G GKST LR ++ E
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 59 ----YNGEAWLATGFTV-------GYLPQEPQLDLSKTVKENIIEGVAH----KQAILDR 103
Y G L + V G + Q+P K++ NI + + ++++LD
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPN-PFPKSIYNNITHALKYAGERRKSVLD- 138
Query: 104 YNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR 163
E EE + K LWD EV+ + LH A SLSGG+++
Sbjct: 139 ---------EIVEESLTK-------AALWD---EVK---DRLHSSA-----LSLSGGQQQ 171
Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
R+ + + L P +LLLDEP + LD + A +E+ + EYS +++VTH+
Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYS--IIIVTHN 222
Score = 45.0 bits (106), Expect = 5e-05
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 61/240 (25%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR--------------- 361
++E K +S Y ++ ++++S + + +IGP+G GK+T R
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 362 -------------------------MLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEK 396
M+ +P +I+ T L Y + R K
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERR------K 134
Query: 397 TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456
+V ++I E+ R + SA SLSGGQ+ R+ +A+ L
Sbjct: 135 SVLDEIVEESLTKAALWDEVKDRLHSSAL------------SLSGGQQQRLCIARTLAMK 182
Query: 457 GNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHV 514
V+LLDEP + LD + + +E+ + +I++H+ R++ AF NG +
Sbjct: 183 PAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRT-AFFLNGDL 241
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 67.6 bits (165), Expect = 8e-12
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ A ++ S N+ + L F + G + V G NGAGKTTL R+L G +SG I +
Sbjct: 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70
Query: 377 GETVCLSYVDQSR-----DSLEAEKTVWEDISGGDDIVKLNG-HEINSRAY-CSAFNFKG 429
+ + D+SR L K D+S +++ L G H ++ SA G
Sbjct: 71 -DGKTATRGDRSRFMAYLGHLPGLK---ADLSTLENLHFLCGLHGRRAKQMPGSALAIVG 126
Query: 430 --GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
G + + LS GQ+ R+ LA++ S + LLDEP +LD E ++ +
Sbjct: 127 LAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV 176
Score = 56.0 bits (135), Expect = 2e-08
Identities = 59/203 (29%), Positives = 82/203 (40%), Gaps = 49/203 (24%)
Query: 27 LSFYPDAKIGIL--GPNGAGKSTILRIMAG----------IDKEYNGEAWLATGFTVGYL 74
L F+ DA +L G NGAGK+T+LR++AG ID + + + YL
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR--FMAYL 87
Query: 75 PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134
P L + EN+ H L M S
Sbjct: 88 GHLPGLKADLSTLENL-----HFLCGLHGRRAKQMPGS---------------------- 120
Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW 194
+AI L D L + LS G+K+R+AL +L LS L LLDEP +LD E I
Sbjct: 121 ----ALAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175
Query: 195 MEKYLREY---SGAVLMVTHDRY 214
+ + + + GA L+ TH Y
Sbjct: 176 VNRMISAHLRGGGAALVTTHGAY 198
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 67.4 bits (165), Expect = 8e-12
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGET- 379
+ ++K+Y D ++ +++ + G V +GP+G GK+TL RM+ G E SG + +GE
Sbjct: 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR 66
Query: 380 -------------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426
V SY +L +V E++S G + EIN R A
Sbjct: 67 MNDVPPAERGVGMVFQSY------ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120
Query: 427 FKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ R +LSGGQR RV + + L + +V LLDEP ++LD
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 58.1 bits (141), Expect = 5e-09
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 56/222 (25%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
++K +G + DINL + + +GP+G GKST+LR++AG++ +G+ ++
Sbjct: 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67
Query: 67 -----TGFTVGYLPQEPQLDLSKTVKENIIEGV----AHKQAILDRYNELMMNYSEKTEE 117
VG + Q L +V EN+ G+ A K+ I R N++
Sbjct: 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV---------A 118
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
E+ +L ++D K P LSGG+++RVA+ + L++ P +
Sbjct: 119 EVLQLAHLLDRK------------------PKA------LSGGQRQRVAIGRTLVAEPSV 154
Query: 178 LLLDEPTNHLDAE-------TIAWMEKYLREYSGAVLMVTHD 212
LLDEP ++LDA I+ + K L ++ VTHD
Sbjct: 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGR---TMIYVTHD 193
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 67.3 bits (164), Expect = 9e-12
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 40/251 (15%)
Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL 382
+ K Y + ++ +S + G ++ +IG +G+GK+T R + E P G+I V
Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG---- 66
Query: 383 SYVDQSRDS---------------------------LEAEKTVWEDISGGD-DIVKLNGH 414
++ RD L + TV E++ ++ L+
Sbjct: 67 QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ 126
Query: 415 EINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
E RA Y + Q + LSGGQ+ RV +A+ L V+L DEPT+ LD E
Sbjct: 127 EARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Query: 473 TLSALEDALENFA---GCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE-YEKDK 528
+ + ++ A V+++H+ F +++H++ F G +E EG E+ + +
Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEE-EGAPEQLFGNPQ 244
Query: 529 LSRSSRVLSGA 539
R + L G+
Sbjct: 245 SPRLQQFLKGS 255
Score = 58.1 bits (140), Expect = 5e-09
Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 12/225 (5%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
L K +G +VL ++L I I+G +G+GKST LR + ++K G +
Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70
Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNEL--MMNYSEKTEEEIAKLQDIIDSK 129
++ QL K +N + + + ++ ++ L M E E A +Q + SK
Sbjct: 71 LVRDKDGQL---KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSK 125
Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
+A + A G LSGG+++RV++ + L P++LL DEPT+ LD
Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP 185
Query: 190 ETIA----WMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
E + M++ L E +++VTH+ F +V++ ++ + +GK
Sbjct: 186 ELVGEVLRIMQQ-LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 67.3 bits (164), Expect = 1e-11
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 44/219 (20%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------------------IMAGIDK 57
+G K+ + ++NL ++GP+G GK+T LR ++ G D
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 58 EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
+A VG + Q+P + +V +N++ G+ I DR + +M +E++
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL-KLAGIRDR--DHLMEVAERS-- 128
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
+ LWD EV+ + L PA GL SGG+++R+ + + L P++
Sbjct: 129 --------LRGAALWD---EVK---DRLKTPATGL-----SGGQQQRLCIARALAVEPEI 169
Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRY 214
LL+DEPT+ LD + A +E + + +++VTH+ +
Sbjct: 170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208
Score = 52.7 bits (126), Expect = 2e-07
Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 33/203 (16%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371
++ A+ ++ Y D+ + N++ + G + +IGP+G GKTT R + D +P +
Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63
Query: 372 GTIHV-GETVCLSYVD----QSRDSLEAEK-------TVWEDISGGDDIVKLNG------ 413
G I + G+ + VD + R + +K +V++++ G +KL G
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG---LKLAGIRDRDH 120
Query: 414 -HEINSRAYCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTND 468
E+ R+ A + + + R+ + LSGGQ+ R+ +A+ L ++L+DEPT+
Sbjct: 121 LMEVAERSLRGAALWD--EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178
Query: 469 LDTETLSALEDALENFAGCAVII 491
LD + + +ED + + II
Sbjct: 179 LDPASTARIEDLMTDLKKVTTII 201
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 67.3 bits (165), Expect = 1e-11
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 316 VVIEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
V+I+ + +S SY + + N+SF++ G V ++G NG+GK+T+ ++LTG P SG
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 374 IHV-GETVCLSYVDQSR----------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422
I + G T+ + + R D+ TV +DI+ G + K+ ++
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD 125
Query: 423 SAFNFKGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
A D + +LSGGQ+ RV +A +L +I+ DE T+ LD
Sbjct: 126 LAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
Score = 55.0 bits (133), Expect = 5e-08
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 53/215 (24%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT------- 70
L +++ + ILG NG+GKSTI +I+ G+ K +GE + G T
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI-DGITISKENLK 79
Query: 71 -----VGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
+G + Q P Q + TV+++I G+ +K+ + K++
Sbjct: 80 EIRKKIGIIFQNPDNQF-IGATVEDDIAFGLENKK--VPP----------------KKMK 120
Query: 124 DIIDSKGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
DIID + +V +E P +LSGG+K+RVA+ +L +P++++ D
Sbjct: 121 DIID-------DLAKKVGMEDYLDKEP------QNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 182 EPTNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212
E T+ LD E M + ++ +THD
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 67.2 bits (164), Expect = 1e-11
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 317 VIEAKGISKSYN--DRLL--IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
+I+ I+K ++ + + ++N+S +P G I GVIG +GAGK+TL R + E P SG
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 373 TIHVG--ETVCLSYVDQSRD-----------SLEAEKTVWEDISGGDDIVKLNGHEINSR 419
++ V + LS + ++ +L + +TV+ +++ ++ EI +
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120
Query: 420 AYCSAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---- 473
G GD+ S LSGGQ+ RV +A+ L S V+L DE T+ LD T
Sbjct: 121 V-TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSI 179
Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
L L++ ++I+H+ + R+ + +E
Sbjct: 180 LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221
Score = 63.7 bits (155), Expect = 1e-10
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 64/269 (23%)
Query: 12 LSKVF--GSKKV--LDDINLSFYPDAKI-GILGPNGAGKSTILR-------------IMA 53
++KVF G+K + L++++L P +I G++G +GAGKST++R I+
Sbjct: 7 ITKVFHQGTKTIQALNNVSL-HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVD 65
Query: 54 GIDKEYNGEAWL-ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNEL 107
G D + L +G + Q L S+TV N+ ++ K I + EL
Sbjct: 66 GQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP-KDEIKRKVTEL 124
Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167
+ + L D DS P++ LSGG+K+RVA+
Sbjct: 125 L---------ALVGLGDKHDSY------------------PSN------LSGGQKQRVAI 151
Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG----AVLMVTHDRYFLDNVTNWI 223
+ L S+P +LL DE T+ LD T + + L+E + +L++TH+ + + + +
Sbjct: 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211
Query: 224 LEVDRGKGIPYQGNYSAYLQMKAKRMAQE 252
+ G+ I QG S +AQ+
Sbjct: 212 AVISNGELIE-QGTVSEIFSHPKTPLAQK 239
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 66.7 bits (163), Expect = 1e-11
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 23/139 (16%)
Query: 348 VIGPNGAGKTTLFRMLTGDESPDSGTIHVGE--------------TVCLSYVDQSRDSLE 393
++GP+G GKTTL R+L G E PDSG+I + V SY +L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSY------ALF 54
Query: 394 AEKTVWEDISGGDDIVKLNGHEINSR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK 451
TV E+++ G + K+ EI R ++ LSGGQ+ RV LA+
Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQL-EEFADRKPHQLSGGQQQRVALAR 113
Query: 452 ILKSGGNVILLDEPTNDLD 470
L ++LLDEP + LD
Sbjct: 114 ALVFKPKILLLDEPLSALD 132
Score = 63.7 bits (155), Expect = 1e-10
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 40/189 (21%)
Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
+LGP+G GK+T+LR++AG ++ P + L E++ H
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQ-----------------PDSGSIMLDG---EDVTNVPPH 40
Query: 97 KQAILDRYNELMMNYS----EKTEEEIA---KLQDIIDSKGLWDLETEVQVAIESLHCPA 149
+ I N + +Y+ EE +A K++ + + +++ V A+ +
Sbjct: 41 LRHI----NMVFQSYALFPHMTVEENVAFGLKMRKVPRA----EIKPRVLEALRLVQLEE 92
Query: 150 DGLN-ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSG 204
LSGG+++RVAL + L+ P +LLLDEP + LD + M+ L +
Sbjct: 93 FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152
Query: 205 AVLMVTHDR 213
+ VTHD+
Sbjct: 153 TFVFVTHDQ 161
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 66.6 bits (163), Expect = 1e-11
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 53/219 (24%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
L +G K L+DINL+ + +LGP+G GK+T+L ++AG +G L
Sbjct: 6 HLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65
Query: 67 --TGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSEKTEEEI 119
G G + Q L + V++N+ + GV Q + ++
Sbjct: 66 EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ-------------RLEIAHQM 112
Query: 120 AKLQDII--DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
K + + + +W L SGG+++RV + + L ++P L
Sbjct: 113 LKKVGLEGAEKRYIWQL-----------------------SGGQRQRVGIARALAANPQL 149
Query: 178 LLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
LLLDEP LDA T M+ L +E VL++THD
Sbjct: 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
Score = 64.7 bits (158), Expect = 6e-11
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
++ + Y + +++++ L G ++ V+GP+G GKTTL ++ G G+I +
Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
Query: 378 ETVCLSYVDQSRDSLEAEKTV---------WEDISGGDDI---VKLNGHEINSRAYCSAF 425
+ + AE+ V W ++ D++ ++L G E R +
Sbjct: 62 G--------KPVEGPGAERGVVFQNEGLLPWRNVQ--DNVAFGLQLAGVEKMQRLEIAHQ 111
Query: 426 NFK----GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
K G +++ I LSGGQR RV +A+ L + ++LLDEP LD T
Sbjct: 112 MLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 67.0 bits (164), Expect = 1e-11
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 34/204 (16%)
Query: 317 VIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+I + IS Y + ++SF + G V ++G NG+GK+TL ++L G P++GTI
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 375 HVG------ETVC-----LSYVDQSRDSLEAEKTVWEDISGG--------DDIVKLNGHE 415
VG ETV + V Q+ D+ TV +D++ G +++V+ +
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-RVDQ 123
Query: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----T 471
+ F + LSGGQ+ RV +A +L ++I+LDE T+ LD
Sbjct: 124 ALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 472 ETLSALEDALENFAGCAVI-ISHD 494
E L + L+ G V+ I+HD
Sbjct: 178 EVLETVRQ-LKEQKGITVLSITHD 200
Score = 48.9 bits (117), Expect = 4e-06
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTH 211
LSGG+K+RVA+ +L PD+++LDE T+ LD E + + + + VL +TH
Sbjct: 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199
Query: 212 D 212
D
Sbjct: 200 D 200
Score = 32.3 bits (74), Expect = 0.36
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI 55
+ L D++ S Y + I+G NG+GKST+ +++ G+
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 66.6 bits (163), Expect = 1e-11
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 12 LSKVFGSK-----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYN 60
+ K+F K K LD++++ I I+G G+GK+T + + + E+
Sbjct: 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67
Query: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENI--IEGVAHKQAILDRYNELMMNYSEKTEEE 118
+ T +L + KT + I I+ + + ++ ++ E + E+
Sbjct: 68 FKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-----FEQT 122
Query: 119 IAKLQDII---DSKGLWDLETEVQVA--IESLHCPADGLNIT--SLSGGEKRRVALCKLL 171
I K DII S G+ E + + A IE + L + LSGG+KRRVAL +L
Sbjct: 123 IEK--DIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180
Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SG-AVLMVTHDRYFLDNVTNW 222
PD L+ DEPT LD + + + + G +++VTHD LDNV W
Sbjct: 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD---LDNVLEW 231
Score = 49.7 bits (119), Expect = 2e-06
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 318 IEAKGISKSYNDRL-----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
I+ K I K +N +L +DN+S ++ G + +IG G+GKTT L PD+G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 373 TI 374
TI
Sbjct: 63 TI 64
Score = 40.5 bits (95), Expect = 0.001
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVII-SHD 494
LSGGQ+ RV LA IL + ++ DEPT LD + + + + +N G +I+ +HD
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 66.2 bits (161), Expect = 2e-11
Identities = 60/229 (26%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
+++++ L K +L DI + ++ GI+GP+G+GKST+L+++ + + Y+ + +
Sbjct: 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSK--I 67
Query: 66 ATGFTVGYLPQEP-QLDLSKTVKENIIEGVAHKQ-------AILDRYNELMMNYSEKTEE 117
V Y ++ Q+D K KE G+ +Q +I D + ++ K +
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKE---VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKR 124
Query: 118 EIAKL-QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
EI K+ ++ + GLW EV + L+ PA + LSGG+++R+ + + L P
Sbjct: 125 EIKKIVEECLRKVGLW---KEVY---DRLNSPA-----SQLSGGQQQRLTIARALALKPK 173
Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWI 223
+LL+DEPT+ +D +EK + E A+++V+H+ + V +++
Sbjct: 174 VLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYV 222
Score = 58.1 bits (140), Expect = 6e-09
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 29/226 (12%)
Query: 323 ISKSY---NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGET 379
IS+ Y ND+ ++ +++ K+P I G++GP+G+GK+TL ++L I V
Sbjct: 13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK 72
Query: 380 VCLSYVDQSR-DSLEAEKTV---------WEDISGGDDIV-KLNGHEINSRAYCSAFNFK 428
V D + D+++ K V + +S D+I L H I + +
Sbjct: 73 VLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE 132
Query: 429 G-------GDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
+ R+ S LSGGQ+ R+ +A+ L V+L+DEPT+ +D A+
Sbjct: 133 CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI 192
Query: 478 EDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGH-VEWFEGN 520
E + VI+SH+ + R+A ++ AF NG VEW N
Sbjct: 193 EKLITELKNEIAIVIVSHNPQQVARVADYV-AFLYNGELVEWGSSN 237
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 66.0 bits (161), Expect = 2e-11
Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 59/239 (24%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI----- 55
M + I L+ +G K L DI +S + ++GP+G GKST+LR +
Sbjct: 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60
Query: 56 ------DKEYNGEAWLATGFTV-------GYLPQEPQLDLSKTVKENI-----IEGVAHK 97
D YNGE + +G V G + Q P K++ EN+ I G +K
Sbjct: 61 GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN-PFPKSIYENVAYGPRIHGEKNK 119
Query: 98 QAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSL 157
+ LD E + + LWD EV+ + LH A SL
Sbjct: 120 KT-LDTIVEKSLKGA-----------------ALWD---EVK---DRLHDSA-----LSL 150
Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
SGG+++R+ + + L +P+++L+DEP + LD A +E + +EY+ V++VTH+
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYT--VIIVTHN 207
Score = 59.8 bits (145), Expect = 2e-09
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 52/219 (23%)
Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR------------ 361
+++ K ++ Y ++ + +++ +P + +IGP+G GK+TL R
Sbjct: 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC 62
Query: 362 MLTGDESPDSGTIH--VGETVCL----SYVDQSRDSLEAEKTVWEDISGG---------- 405
+TGD + I + V L V Q + K+++E+++ G
Sbjct: 63 RITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP--KSIYENVAYGPRIHGEKNKK 120
Query: 406 --DDIVKLNGH------EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGG 457
D IV+ + E+ R + SA SLSGGQ+ R+ +A+ L
Sbjct: 121 TLDTIVEKSLKGAALWDEVKDRLHDSAL------------SLSGGQQQRLCIARTLAVNP 168
Query: 458 NVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHD 494
VIL+DEP + LD + +ED +E+ +I++H+
Sbjct: 169 EVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 66.0 bits (162), Expect = 2e-11
Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 52/248 (20%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ +G+S S++ +++LS + PG + +IGPNGAGKTT+ ++TG PD G++
Sbjct: 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61
Query: 377 GETVCLS--------------------YVDQS-RDSLE----AEKTVWEDISGGDDIVKL 411
G T + + + ++LE +K+V+ + +L
Sbjct: 62 GGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF-----RL 116
Query: 412 NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL-D 470
+ E + + + G LS GQ+ + + +L ++LLDEP + D
Sbjct: 117 SAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176
Query: 471 TETLSALEDALENFAG-CAVI-ISHDRMFLDRLAT--------HILAFEGNGHVEWFEGN 520
ET + L++ AG +V+ + HD F+ +A +LA EG+
Sbjct: 177 EET-EKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA----------EGS 225
Query: 521 FEEYEKDK 528
++ + D
Sbjct: 226 LDQVQADP 233
Score = 63.7 bits (156), Expect = 1e-10
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 41/235 (17%)
Query: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64
I ++ GLS F K L+D++L P I+GPNGAGK+T++ ++ G + G
Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60
Query: 65 LA----TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112
TG +G Q+P + + TV EN+ + +++ +
Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVF----ASLF--F 114
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
+ EE ++++++++ GL D A GL LS G+K+ + + LL+
Sbjct: 115 RLSAEEKDRIEEVLETIGLADE----------ADRLA-GL----LSHGQKQWLEIGMLLM 159
Query: 173 SSPDLLLLDEPTNHL-DAETIAWMEKYLREYSG--AVLMVTHD----RYFLDNVT 220
P LLLLDEP + D ET E L+ +G +V++V HD R D VT
Sbjct: 160 QDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVT 213
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 65.8 bits (161), Expect = 2e-11
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 46/194 (23%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66
+SK + +VL I+ + + +LG NGAGKST+++I+AGI +G +
Sbjct: 16 SISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC 75
Query: 67 TGFTVG-------YL-PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
T YL PQEP L + +VKENI+ G+ +QA +K ++
Sbjct: 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----------MQKMKQL 124
Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
+A L +D L A L + +++ V + + L+ +L
Sbjct: 125 LAALGCQLD-----------------LDSSAGSLEV-----ADRQIVEILRGLMRDSRIL 162
Query: 179 LLDEPTNHLD-AET 191
+LDEPT L AET
Sbjct: 163 ILDEPTASLTPAET 176
Score = 56.2 bits (136), Expect = 2e-08
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ A+ ISK Y+ ++ + F L G + ++G NGAGK+TL +++ G PDSGT+ +
Sbjct: 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70
Query: 377 GETVC 381
G C
Sbjct: 71 GGNPC 75
Score = 53.5 bits (129), Expect = 1e-07
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 24/195 (12%)
Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC------------L 382
N+S ++ G I+G+ G GAG+T L L G G I + L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 383 SYVDQSRDS----LEAEKTVWEDISGGDDIVKLNGHEINSRA----YCSAFNFKGGDQQQ 434
Y+ + R S L+A W + + A Y A N K +Q
Sbjct: 341 VYLPEDRQSSGLYLDAPLA-WNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ 399
Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-I 491
+LSGG + +V +AK L++ ++++DEPT +D + + + + A AV+ I
Sbjct: 400 AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI 459
Query: 492 SHDRMFLDRLATHIL 506
S D ++++A +L
Sbjct: 460 SSDLEEIEQMADRVL 474
Score = 37.0 bits (86), Expect = 0.013
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET---IAWMEKYLREYSGAVLMVTHD 212
LSGG +++V + K L +SP LL++DEPT +D I + + + + AVL ++ D
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 66.0 bits (161), Expect = 2e-11
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 55/235 (23%)
Query: 3 RKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------- 52
+K ++ L+ +G L +INL + + I+GP+G GKST ++ +
Sbjct: 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSV 80
Query: 53 --AG---------IDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL 101
G DK Y+ E L T VG + Q+P K++ +N+ G I
Sbjct: 81 KTTGKILYRDQNIFDKSYSVEE-LRT--NVGMVFQKPN-PFPKSIYDNVTYG-PKIHGIK 135
Query: 102 DRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGE 161
D+ KT +EI + + +WD E++ + LH N LSGG+
Sbjct: 136 DK----------KTLDEIV--EKSLRGAAIWD---ELK---DRLH-----DNAYGLSGGQ 172
Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
++R+ + + L PD++L+DEPT+ LD + +E+ ++E YS +++VTH+
Sbjct: 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS--IIIVTHN 225
Score = 42.1 bits (99), Expect = 3e-04
Identities = 60/266 (22%), Positives = 117/266 (43%), Gaps = 63/266 (23%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRMLTGDESPDS 371
VV + + ++ Y + + N++ + + +IGP+G GK+T L RM+ + P
Sbjct: 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV--ELVPSV 80
Query: 372 GTIHVGETVCLSYVDQ-------SRDSLEAE------------KTVWEDISGG------- 405
T G+ + Y DQ S + L K+++++++ G
Sbjct: 81 KT--TGKIL---YRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIK 135
Query: 406 -----DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILK 454
D+IV+ L G E+ R + +A+ LSGGQ+ R+ +A+ L
Sbjct: 136 DKKTLDEIVEKSLRGAAIWDELKDRLHDNAY------------GLSGGQQQRLCIARCLA 183
Query: 455 SGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNG 512
+VIL+DEPT+ LD + +E+ ++ +I++H+ R++ AF NG
Sbjct: 184 IEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKT-AFFLNG 242
Query: 513 HVEWFEGNFEEYEKDKLSRSSRVLSG 538
+V ++ + + R+ ++G
Sbjct: 243 YVNEYDDTDKIFSNPSDKRTEDYITG 268
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 65.5 bits (160), Expect = 3e-11
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 27/215 (12%)
Query: 318 IEAKGISKSYN-----DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
I+ + ++ Y ++ +DN++ ++ G VG+IG G+GK+TL + L G P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 373 TIHV------GETVCLSY-------VDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419
I + + V LS V Q + E+T+ +DI+ G + L+ EI +R
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 420 AYCSAFNFKGGD----QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----T 471
A N G D + + LSGGQ+ RV +A ++ +++LDEPT LD
Sbjct: 123 VK-RAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181
Query: 472 ETLSALEDALENFAGCAVIISHDRMFLDRLATHIL 506
E L+ +++ + + +++SH + +LA I+
Sbjct: 182 EILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216
Score = 59.7 bits (145), Expect = 2e-09
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 33/205 (16%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
KK LD++N+ +G++G G+GKST+++ + G+ K +G+ + G +
Sbjct: 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII-DGVDI------- 71
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII---DSKGLWDLE 135
K VK + I K ++ +Y E + EE I K DI + GL + E
Sbjct: 72 ---TDKKVKLSDIR---KKVGLVFQYPEYQL-----FEETIEK--DIAFGPINLGLSEEE 118
Query: 136 TEVQV--AIESLHCPADGLNITS---LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA- 189
E +V A+ + + S LSGG+KRRVA+ ++ P +L+LDEPT LD
Sbjct: 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 190 ---ETIAWMEKYLREYSGAVLMVTH 211
E + +++ +EY+ +++V+H
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSH 203
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 65.2 bits (159), Expect = 4e-11
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
Y GL VL +++LS +G+LG +G GKST+ R++ G++K G
Sbjct: 11 TYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF 70
Query: 66 ATGFTVGYLPQEPQLDLSKTVK---ENIIEGVAHKQAILDRYNELMMNYSEKTE-EEIAK 121
G + L ++ + + V+ ++ V + + E + + + E E+ A+
Sbjct: 71 R-GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKAR 129
Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
+ +++D + L +E AD L LSGG+ +R+ + + L P L++LD
Sbjct: 130 IAELLD---MVGLRSED----------ADKLP-RQLSGGQLQRINIARALAVKPKLIVLD 175
Query: 182 EPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
E ++LD A + + K + + A L +THD
Sbjct: 176 EAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210
Score = 60.6 bits (147), Expect = 1e-09
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 33/231 (14%)
Query: 317 VIEAKGISKSYNDRLL---------IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367
++E + ++ +Y L + N+S + G VG++G +G GK+TL R+L G E
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 368 SPDSGTIH----------------VGETVCLSYVDQSRDSLEAEKTVWEDISGG-DDIVK 410
P GT+ V L + D S ++ TV + I +
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD-SPSAVNPRMTVRQIIGEPLRHLTS 120
Query: 411 LNGHEINSR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
L+ E +R + D + LSGGQ R+++A+ L +I+LDE ++
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 469 LD----TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
LD L L + F + I+HD + + + VE
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 64.6 bits (158), Expect = 6e-11
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY---NGEAWLATGFTVGYLP 75
K++L +NL+ I+GPNG+GKST+ + +AG Y +G + P
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG-HPSYEVTSGTILFKGQDLLELEP 71
Query: 76 QEPQ---LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
E L L+ E I GV++ + + N S + EE + L
Sbjct: 72 DERARAGLFLAFQYPEEI-PGVSNLEFLRSALNARR---SARGEEPLD----------LL 117
Query: 133 DLETEVQVAIESLHCPAD----GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
D ++ + L + +N SGGEK+R + ++ L P L +LDE + LD
Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSVN-EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176
Query: 189 -------AETIAWMEKYLREYSGAVLMVTHDRYFLDNVT-NWILEVDRGKGIPYQGNYSA 240
AE I LRE + L++TH + L+ + +++ + G+ I G+
Sbjct: 177 IDALKIVAEGI----NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR-IVKSGDVEL 231
Query: 241 YLQMKAK 247
+++ K
Sbjct: 232 AKELEEK 238
Score = 44.2 bits (105), Expect = 8e-05
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD--SGTI 374
S D+ ++ ++ + G I ++GPNG+GK+TL + + G S + SGTI
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 64.0 bits (156), Expect = 1e-10
Identities = 112/505 (22%), Positives = 204/505 (40%), Gaps = 125/505 (24%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68
M+ +SK F K LD++NL P + ++G NGAGKST+L+ + GI ++ +G
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS------ 54
Query: 69 FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMN-----YSEK----TEEEI 119
+ + +E SK EN I V H++ L +M N Y K ++++
Sbjct: 55 --ILFQGKEIDFKSSKEALENGISMV-HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKM 111
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
+ D+K ++D E+ + I+ P + +LS + + + + K + +++
Sbjct: 112 YR-----DTKAIFD---ELDIDID----PRA--KVATLSVSQMQMIEIAKAFSYNAKIVI 157
Query: 180 LDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYS 239
+DEPT+ L + + + +R+ +RG GI
Sbjct: 158 MDEPTSSLTEKEVNHLFTIIRKLK-----------------------ERGCGI------- 187
Query: 240 AYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELV-----ES 294
Y+ K + + Q + + I R+ WI + P + ++++ S
Sbjct: 188 VYISHKMEEIFQ-----LCDEITILRDGQWIATQP--------LAGLTMDKIIAMMVGRS 234
Query: 295 AAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGA 354
R P + G V++E + ++ I ++SF L G I+G+ G GA
Sbjct: 235 LTQRFP-------DKENKPGEVILEVRNLTSLRQPS--IRDVSFDLHKGEILGIAGLVGA 285
Query: 355 GKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLEAEKT----VWED-----ISG 404
+T + L G +GTI + G+ + + ++ EA V E+ I
Sbjct: 286 KRTDIVETLFGIREKSAGTITLHGKKI------NNHNANEAINHGFALVTEERRSTGIYA 339
Query: 405 GDDIVKLNGHEINSRAYCSAF-------------------NFKGGDQQQRIGSLSGGQRG 445
DI N N R Y + K + +IGSLSGG +
Sbjct: 340 YLDI-GFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398
Query: 446 RVHLAKILKSGGNVILLDEPTNDLD 470
+V + + L + +++LDEPT +D
Sbjct: 399 KVIIGRWLLTQPEILMLDEPTRGID 423
Score = 48.6 bits (116), Expect = 4e-06
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-HVGET 379
ISKS+ +DN++ K+ P I ++G NGAGK+TL + L G DSG+I G+
Sbjct: 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61
Query: 380 VCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVK--LNGHEINSRAYCSA 424
+ S+++LE +++V +++ G K + R +
Sbjct: 62 IDFK---SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAI 118
Query: 425 FNFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482
F+ D + ++ +LS Q + +AK ++++DEPT+ L + ++ L +
Sbjct: 119 FDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR 178
Query: 483 NFA--GCAVI-ISH 493
GC ++ ISH
Sbjct: 179 KLKERGCGIVYISH 192
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 63.9 bits (156), Expect = 1e-10
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTIL-----RIMAGIDKE----YNGEAWLATGF 69
K +L +++ P + ++G +GAGK+T++ R G+ NG A
Sbjct: 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEM 97
Query: 70 TV--GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
Y+ Q+ + TV+E+++ QA L M +E+ ++ +++
Sbjct: 98 RAISAYVQQDDLFIPTLTVREHLM-----FQA------HLRMPRRVTKKEKRERVDEVLQ 146
Query: 128 SKGLWDL-ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
+ GL T + V + LSGGE++R+A LL+ P LL DEPT+
Sbjct: 147 ALGLRKCANTRIGV----------PGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196
Query: 187 LDA 189
LD+
Sbjct: 197 LDS 199
Score = 35.8 bits (83), Expect = 0.026
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTL-----FRMLTG 365
L+ N+S PG ++ V+G +GAGKTTL FR G
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG 78
Score = 35.0 bits (81), Expect = 0.054
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 432 QQQRIG------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485
RIG LSGG+R R+ A L + ++ DEPT+ LD+ ++ L+ A
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 486 --GCAVIIS 492
G +I +
Sbjct: 214 QKGKTIICT 222
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 63.6 bits (155), Expect = 1e-10
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 46/181 (25%)
Query: 18 SKKVLDDINLSFYPDAKIG-ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
K +L D+++S P K+ +LG G+GKST+L+ + + G W ++ Y+PQ
Sbjct: 672 PKVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER--SIAYVPQ 728
Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL----- 131
+ + ++ TV+ NI+ D EE+ A+L D + L
Sbjct: 729 QAWI-MNATVRGNIL--------FFD-------------EEDAARLADAVRVSQLEADLA 766
Query: 132 ---WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
LETE+ G+N LSGG+K RV+L + + ++ D+ LLD+P + LD
Sbjct: 767 QLGGGLETEIG---------EKGVN---LSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 189 A 189
A
Sbjct: 815 A 815
Score = 47.5 bits (113), Expect = 9e-06
Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 44/276 (15%)
Query: 274 PKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGH----VVIEAKGISKSYND 329
P R + + S+A RH I+ G GH + K D
Sbjct: 612 PTKRHPSPSVVVEDTDYGSPSSASRH------IVEGGTGGGHEATPTSERSAKTPKMKTD 665
Query: 330 -------RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL 382
++L+ ++S +P G + V+G G+GK+TL + L G + ++
Sbjct: 666 DFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSI-- 723
Query: 383 SYVDQSRDSLEAEKTVWEDISGGD--------DIVKLNGHEINSRAYCSAFNFKGGDQQQ 434
+YV Q + A TV +I D D V+++ E + GG +
Sbjct: 724 AYVPQQAWIMNA--TVRGNILFFDEEDAARLADAVRVSQLEADLAQL-------GGGLET 774
Query: 435 RIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET--LSALEDALENFAGCA 488
IG +LSGGQ+ RV LA+ + + +V LLD+P + LD E L AG
Sbjct: 775 EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834
Query: 489 VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEY 524
+++ ++ + A +++A G VE F G+ ++
Sbjct: 835 RVLATHQVHVVPRADYVVALGD-GRVE-FSGSSADF 868
Score = 32.8 bits (75), Expect = 0.20
Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 65/204 (31%)
Query: 331 LLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RMLTGDESPDSGTIHVGETVCLSY-- 384
L++ +SF++ P VG++G G+GK+TL RM+ G I V +Y
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV----EVCGGEIRVNGREIGAYGL 1379
Query: 385 --------------------VDQSRDS-LEAEKT-VWEDISGGDDIVKLNGH------EI 416
V Q+ D LEA VW + ++V L I
Sbjct: 1380 RELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAAL----ELVGLRERVASESEGI 1435
Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK-ILKSGGNVILLDEPTNDLDTETLS 475
+SR N+ S GQR + +A+ +LK G IL+DE T ++D
Sbjct: 1436 DSRVLEGGSNY------------SVGQRQLMCMARALLKKGSGFILMDEATANID----P 1479
Query: 476 ALEDALEN-----FAGCAVI-ISH 493
AL+ ++ F+ VI I+H
Sbjct: 1480 ALDRQIQATVMSAFSAYTVITIAH 1503
Score = 30.5 bits (69), Expect = 0.98
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTIL 49
VL ++ P K+GI+G G+GKST+L
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 63.7 bits (155), Expect = 1e-10
Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 57/248 (22%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA--------WLATGF---- 69
L IN++ ILG NGAGKST+ + + GI K +G + G
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 70 -TVGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
+VG + Q+P L S +V +++ G + + D + + N ++T I L+D
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTG--IEHLKD--- 136
Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
+ HC LS G+K+RVA+ +L+ P +L+LDEPT L
Sbjct: 137 ---------------KPTHC---------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 188 DAETIAWMEKYLREYSG----AVLMVTHDRYFLDNVTNW---ILEVDRGKGIPYQGNYSA 240
D ++ + K L E +++ THD +D V + + + G+ I QGN
Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHD---IDIVPLYCDNVFVMKEGRVI-LQGNPK- 227
Query: 241 YLQMKAKR 248
++ A++
Sbjct: 228 --EVFAEK 233
Score = 59.1 bits (143), Expect = 3e-09
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 25/200 (12%)
Query: 317 VIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+++ + ++ +Y+D + ++ + G + ++G NGAGK+TLF+ L G P SG I
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 376 VG---------------ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420
E+V + V Q D+ +V++D+S G +KL E+ R
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGM--VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 421 YCSAFNFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETL 474
+A G + + + LS GQ+ RV +A +L V++LDEPT LD +E +
Sbjct: 123 D-NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 475 SALEDALENFAGCAVIISHD 494
L + + +I +HD
Sbjct: 182 KLLVEMQKELGLTIIIATHD 201
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 63.3 bits (154), Expect = 1e-10
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV 380
+ +S R L+ LS P G + G+IG NG+GK+TL +ML + P G I +
Sbjct: 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74
Query: 381 C-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429
++Y+ Q + E TV E ++ G + H R F
Sbjct: 75 LESWSSKAFARKVAYLPQQLPAAEG-MTVRELVAIG----RYPWHGALGR-------FGA 122
Query: 430 GDQQQ----------------RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD--- 470
D+++ + SLSGG+R R +A ++ +LLDEPT+ LD
Sbjct: 123 ADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
Query: 471 -TETLSALEDALENFAGCAVI-ISHDRMFLDRLATHILAFEG 510
+ L AL L G VI + HD R +++A G
Sbjct: 183 QVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223
Score = 61.3 bits (149), Expect = 5e-10
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 42/210 (20%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG---------EAWLATGF 69
+ +L ++L+F G++G NG+GKST+L+++ G E+W + F
Sbjct: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 70 T--VGYLPQE-PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
V YLPQ+ P + TV+E + G L R+ EK EE I+ +
Sbjct: 84 ARKVAYLPQQLPAAE-GMTVRELVAIGRYPWHGALGRFG---AADREKVEEAISLV---- 135
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
GL L + + SLSGGE++R + L+ LLLDEPT+
Sbjct: 136 ---GLKPLAHRL---------------VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 187 LD----AETIAWMEKYLREYSGAVLMVTHD 212
LD + +A + + +E V+ V HD
Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHD 207
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 63.3 bits (154), Expect = 1e-10
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG----------- 365
++E KGI K++ +D + ++ PG VG+ G NGAGK+TL ++L+G
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 366 --DESP-DSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEIN----- 417
SP + I E + + Q +L E +V E+I G++I L G +
Sbjct: 61 YWSGSPLKASNIRDTERAGIVIIHQEL-TLVPELSVAENIFLGNEIT-LPGGRMAYNAMY 118
Query: 418 --SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475
++ + + +G GGQ+ V +AK L +++LDEP++ L +
Sbjct: 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 476 ALEDALENFA--GCAVI-ISH 493
L D + + G A + ISH
Sbjct: 179 ILLDIIRDLKAHGVACVYISH 199
Score = 59.8 bits (145), Expect = 1e-09
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 42/200 (21%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI--------DKEYN 60
M G+ K FG K LD I+L P +G+ G NGAGKST+++I++G+ + ++
Sbjct: 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWS 63
Query: 61 GEAWLATGFT------VGYLPQEPQLDLSKTVKENIIEG--VAHKQAILDRYNELMMNYS 112
G A+ + + QE L +V ENI G + M Y+
Sbjct: 64 GSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGR--------MAYN 115
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
L+ E+Q+ ++ + GG+++ V + K L
Sbjct: 116 AMYLRAKNLLR-------------ELQLDADN-----VTRPVGDYGGGQQQLVEIAKALN 157
Query: 173 SSPDLLLLDEPTNHLDAETI 192
LL+LDEP++ L +
Sbjct: 158 KQARLLILDEPSSSLTEKET 177
Score = 46.4 bits (110), Expect = 2e-05
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 39/186 (20%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-DKEYNGEAWLATGFTVGYLPQE 77
+K +DD++ S +G+ G GAG++ +++ + G ++ G ++
Sbjct: 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI----------NG 322
Query: 78 PQLDLSKTVKENIIEGVA------HKQAILDRYN-------ELMMNYSEKTEEEIAKLQD 124
+D+ + + I G+A + I+ ++ ++ K + A
Sbjct: 323 KPVDI-RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQ 381
Query: 125 IIDSKGLWDLETEVQVAIESLHCPADG--LNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182
II S AI+ L L I LSGG +++ L K+LL++P +L+LDE
Sbjct: 382 IIGS------------AIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429
Query: 183 PTNHLD 188
PT +D
Sbjct: 430 PTRGVD 435
Score = 43.3 bits (102), Expect = 2e-04
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 313 LGHVVIEAKGISKSYND---RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD-ES 368
+G V++EA+ ++ R +D++SF L G I+GV G GAG+T L + L G
Sbjct: 253 IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG 312
Query: 369 PDSGTIH--------------VGETVCLSYVDQSRDSLEAEKTVWEDIS-------GGDD 407
G + + + + D+ R + V ++I+
Sbjct: 313 KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKM 372
Query: 408 IVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
+ + K IG LSGG + + LAK+L + V++LDEPT
Sbjct: 373 RIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432
Query: 468 DLD 470
+D
Sbjct: 433 GVD 435
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 63.2 bits (154), Expect = 2e-10
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 55/224 (24%)
Query: 14 KVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----------EYNG 61
VF G K+ L D++L +GP+G GKST LR + ++ +G
Sbjct: 26 SVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85
Query: 62 EAWLATGF-------TVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMM 109
E VG + Q+P K++ EN+ I G+A +A LD E++
Sbjct: 86 EDIYDPRLDVVELRARVGMVFQKPN-PFPKSIYENVAYGPRIHGLARSKAELD---EIVE 141
Query: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169
K GLW+ EV+ + LH P T LSGG+++R+ + +
Sbjct: 142 TSLRKA--------------GLWE---EVK---DRLHEPG-----TGLSGGQQQRLCIAR 176
Query: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211
+ SP+++L+DEP + LD A +E+ + E +++VTH
Sbjct: 177 AIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
Score = 49.3 bits (118), Expect = 2e-06
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 37/207 (17%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDSG 372
+ A+ +S Y ++ + ++ +P + IGP+G GK+T R L T D +G
Sbjct: 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG 79
Query: 373 TIHV-GETVCLSYVDQSRDSLEAE--------------KTVWEDISGGDDI-----VKLN 412
I + GE + D D +E K+++E+++ G I K
Sbjct: 80 KITLDGEDI----YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAE 135
Query: 413 GHEI--NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
EI S + + LSGGQ+ R+ +A+ + VIL+DEP + LD
Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 471 ---TETLSALEDAL-ENFAGCAVIISH 493
T + L D L +N+ VI++H
Sbjct: 196 PIATAKVEELIDELRQNY--TIVIVTH 220
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 63.4 bits (155), Expect = 2e-10
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG--DESPDSGTI 374
++E K I+K++ +DN+S K+ G IV + G NGAGK+TL ++L+G G I
Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64
Query: 375 HV-GETVCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVK---LNGHEIN 417
GE + S + RD+ A E +V E+I G++I ++ +
Sbjct: 65 IFEGEELQASNI---RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 418 SRAYCSAFNFK-GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL---DTET 473
RA K + +G+L GQ+ V +AK L +++LDEPT L +T
Sbjct: 122 LRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181
Query: 474 LSALEDALENFAGCAVIISH 493
L + L+ + ISH
Sbjct: 182 LLDIIRDLKAHGIACIYISH 201
Score = 51.5 bits (124), Expect = 5e-07
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 49/202 (24%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKE--YN 60
M ++K FG K LD+++L + + G NGAGKST++++++G+ + E +
Sbjct: 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67
Query: 61 GEAWLATGFT------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM----MN 110
GE A+ + + QE L +V ENI G NE+ M+
Sbjct: 68 GEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG-----------NEITPGGIMD 116
Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
Y L ++++ I PA + +L G+++ V + K
Sbjct: 117 YDAMYLRAQKLLA-------------QLKLDIN----PA--TPVGNLGLGQQQLVEIAKA 157
Query: 171 LLSSPDLLLLDEPTNHL-DAET 191
L LL+LDEPT L ++ET
Sbjct: 158 LNKQARLLILDEPTASLTESET 179
Score = 46.5 bits (111), Expect = 2e-05
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 25/182 (13%)
Query: 314 GHVVIEAKGIS---KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD-ESP 369
G V++E + ++ +D++SF L G I+G+ G GAG+T L + L G
Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR 315
Query: 370 DSGTIHV-GETV-------------CLSYVDQSRDSLEAEKTVWEDI--SGGDDIVKL-- 411
G I + G+ V + D+ RD + V ++I + D
Sbjct: 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR 375
Query: 412 --NGHEINS-RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
+ E+ + K + I LSGG + + LAK L +++LDEPT
Sbjct: 376 IDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
Query: 469 LD 470
+D
Sbjct: 436 ID 437
Score = 44.5 bits (106), Expect = 7e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 152 LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188
L I LSGG +++ L K LL +P +L+LDEPT +D
Sbjct: 401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 63.3 bits (154), Expect = 2e-10
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------- 52
MA GLS +G + L DI+L F + ++GP+G GKST LR +
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 53 -AGIDKE--YNGEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILD 102
A ++ E +GE VG + Q+P K++ EN+ G+
Sbjct: 61 GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN-PFPKSIFENVAYGL-------- 111
Query: 103 RYNELMMNYSEKTEEEIA-KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGE 161
R N + K + +A +++ + LWD EV+ + LH A GL SGG+
Sbjct: 112 RVNGV------KDKAYLAERVERSLRHAALWD---EVK---DRLHESALGL-----SGGQ 154
Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
++R+ + + L P++LL+DEP + LD +E+ + E +++VTH+
Sbjct: 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207
Score = 49.8 bits (119), Expect = 2e-06
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 30/188 (15%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+EA+G+S Y D + ++S + + +IGP+G GK+T R L G G
Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66
Query: 378 ETVCLSYVDQSRDSLEA-----------------EKTVWEDISGGDDIVKLNG----HEI 416
E + L + ++ K+++E+++ G +++NG +
Sbjct: 67 E-ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG---LRVNGVKDKAYL 122
Query: 417 NSRAYCSAFNFKGGDQ-QQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
R S + D+ + R+ LSGGQ+ R+ +A+ L V+L+DEP + LD
Sbjct: 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 472 ETLSALED 479
+E+
Sbjct: 183 IATQKIEE 190
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 63.1 bits (153), Expect = 2e-10
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 52/235 (22%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
A+K I + + +G + L I+L F + ++GP+G GKST LR + ++
Sbjct: 1 EAKKII-TSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIP 59
Query: 61 GEAWLATGFTVG---YLPQEPQLDLSK--------------TVKENIIEGVAHK----QA 99
G G Y P E + L K ++ EN+I G+ +A
Sbjct: 60 GVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKA 119
Query: 100 ILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSG 159
+LD E E + + +WD EV+ + LH A SLSG
Sbjct: 120 VLD----------EAVETSLKQ-------AAIWD---EVK---DHLHESA-----LSLSG 151
Query: 160 GEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
G+++RV + ++L PD++LLDEPT+ LD + +E L E +++VTH
Sbjct: 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206
Score = 45.4 bits (107), Expect = 4e-05
Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 28/194 (14%)
Query: 313 LGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD 370
+I + + Y + + I +IGP+G GK+T R L D P
Sbjct: 1 EAKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60
Query: 371 SGTIHVGETVCLSYVD---QSRDSLEAEK--------------TVWEDISGGDDIVKLNG 413
+ + V L + + D ++ K +++E++ G + +
Sbjct: 61 ---VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKD 117
Query: 414 HEINSRAYCSAFNFKG--GDQQQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
+ A ++ + + + SLSGGQ+ RV +A++L +VILLDEPT+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 468 DLDTETLSALEDAL 481
LD + + +E+ L
Sbjct: 178 ALDPISSTQIENML 191
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 63.0 bits (153), Expect = 2e-10
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 35/157 (22%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ----S 388
++ ++F +P G +V V+G G GK++L L + G +H+ +V +YV Q
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV--AYVPQQAWIQ 711
Query: 389 RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN----------FKGGDQQQRIG- 437
DSL E+I L G +N + Y GD+ + IG
Sbjct: 712 NDSLR------ENI--------LFGKALNEKYYQQVLEACALLPDLEILPSGDRTE-IGE 756
Query: 438 ---SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
+LSGGQ+ RV LA+ + S ++ L D+P + +D
Sbjct: 757 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793
Score = 58.0 bits (140), Expect = 7e-09
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 37/228 (16%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILR-IMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
L+ I S A + ++G G GKS++L ++A +DK E + +V Y+PQ+ +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKGSVAYVPQQAWI 710
Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
+ +++ENI+ G A L Y ++ E A L D+ E+
Sbjct: 711 Q-NDSLRENILFGKA-----------LNEKYYQQVLEACALLPDL-----------EILP 747
Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200
+ + G+N LSGG+K+RV+L + + S+ D+ L D+P + +DA + +++
Sbjct: 748 SGDRTEIGEKGVN---LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804
Query: 201 EYSGAV-----LMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243
G + ++VTH +L V + I+ + GK I G+Y LQ
Sbjct: 805 GPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGK-ISEMGSYQELLQ 850
Score = 50.3 bits (120), Expect = 1e-06
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-----------ATGF 69
VL IN++ + K+GI+G GAGKS++ + I++ GE + F
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK---TEEEIAKLQDII 126
+ +PQ+P L S +++ N LD +++ YS++ E+A L+ +
Sbjct: 1361 KITIIPQDPVL-FSGSLRMN-----------LDPFSQ----YSDEEVWWALELAHLKTFV 1404
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
+ C G N LS G+++ V L + LL +L+LDE T
Sbjct: 1405 SA----------LPDKLDHECAEGGEN---LSVGQRQLVCLARALLRKTKILVLDEATAA 1451
Query: 187 LDAET 191
+D ET
Sbjct: 1452 VDLET 1456
Score = 33.0 bits (75), Expect = 0.21
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE-NFAGCAVI-ISH 493
+LS GQR V LA+ L +++LDE T +D ET + ++ + F C V+ I+H
Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAH 1478
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 62.9 bits (153), Expect = 2e-10
Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377
+ G K ND + G I ++G +G+GK+T RML P +G I + G
Sbjct: 1 KKTGGKKGVND------ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG 54
Query: 378 ETVC--------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
E + + V Q +L T+ ++ S G +++ E +A
Sbjct: 55 ENIMKQSPVELREVRRKKIGMVFQQF-ALFPHMTILQNTSLGPELLGWPEQERKEKAL-E 112
Query: 424 AFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
G + + LSGG + RV LA+ L + +++L+DE + LD +++D L
Sbjct: 113 LLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 482 ----ENFAGCAVIISHD 494
V I+HD
Sbjct: 173 KKLQATLQKTIVFITHD 189
Score = 52.2 bits (125), Expect = 3e-07
Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 48/218 (22%)
Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AG--------IDKE 58
K G KK ++D +L+ I+G +G+GKST +R++ AG I K+
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 59 YNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118
E +G + Q+ L T+ +N L E+E
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNT---------------SLGPELLGWPEQE 105
Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
+ + ++ L LE E H D LSGG ++RV L + L + PD+L
Sbjct: 106 --RKEKALELLKLVGLE-------EYEHRYPD-----ELSGGMQQRVGLARALAAEPDIL 151
Query: 179 LLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
L+DE + LD M+ L ++ +THD
Sbjct: 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 62.7 bits (152), Expect = 2e-10
Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 53/262 (20%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID-----KEYNGEAWL- 65
L+ +G + L +IN+ + ++GP+G GKST LR + Y GE L
Sbjct: 22 LNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81
Query: 66 ---ATGFTVGYLPQEPQLDLS----------KTVKENIIEGV----AHKQAILDRYNELM 108
+ P E ++ +S K++ EN+ G+ +++IL+
Sbjct: 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE----- 136
Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168
++++ + + LWD EV+ + L +LSGG+++R+ +
Sbjct: 137 ------------RVENALRNAALWD---EVKDRLGDL--------AFNLSGGQQQRLCIA 173
Query: 169 KLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV--LMVTHDRYFLDNVTNWILEV 226
+ L + P++LL DEPT+ LD A +E+ + + V L+VTH+ V+++ +
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYM 233
Query: 227 DRGKGIPYQGNYSAYLQMKAKR 248
G+ I + + +++ K K+
Sbjct: 234 YMGELIEFGATDTIFIKPKNKQ 255
Score = 43.8 bits (103), Expect = 1e-04
Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 26/202 (12%)
Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378
E ++ Y + N++ + + +IGP+G GK+T R G + GE
Sbjct: 18 EVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE 77
Query: 379 TVC----LSYVDQSRDSLEAE--------------KTVWEDISGGDDIVKLNGHEINSRA 420
+ ++ + D +E K+++E+++ G I + I
Sbjct: 78 IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEER 137
Query: 421 YCSAFNFKG--GDQQQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
+A + + R+G +LSGGQ+ R+ +A+ L + ++L DEPT+ LD
Sbjct: 138 VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT 197
Query: 475 SALEDALENFAG--CAVIISHD 494
+++E+ + + +I++H+
Sbjct: 198 ASIEELISDLKNKVTILIVTHN 219
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 62.5 bits (152), Expect = 3e-10
Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 48/211 (22%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-------------- 66
+L + L I ++G +G+GKST+L I+AG+D +GE L
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 67 -TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
VG++ Q L + EN+ L+ S + AK
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENV------------ELPALLRGESSRQSRNGAK---- 128
Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
L ++ + H PA LSGGE++RVAL + PD+L DEPT
Sbjct: 129 -------ALLEQLGLGKRLDHLPA------QLSGGEQQRVALARAFNGRPDVLFADEPTG 175
Query: 186 HLDAET---IAWMEKYL-REYSGAVLMVTHD 212
+LD +T IA + L RE+ +++VTHD
Sbjct: 176 NLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Score = 39.0 bits (91), Expect = 0.004
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVIISHD 494
LSGG++ RV LA+ +V+ DEPT +LD +T + D L ++++HD
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 61.8 bits (150), Expect = 4e-10
Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 12 LSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
+SK + G ++ L + P + G +GAGKST+L+++ GI++ G+ W +
Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS---- 62
Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130
G+ D+++ +K + + + ++ + + L+M ++T + + II
Sbjct: 63 -GH-------DITR-LKNREVPFLRRQIGMIFQDHHLLM---DRTVYDNVAIPLIIAGAS 110
Query: 131 LWDLETEVQVAIESLHCPADGLNI-TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
D+ V A++ + N LSGGE++RV + + +++ P +LL DEPT +LD
Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170
Query: 190 ETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGK 230
+ + E++ VLM THD + + +L + G
Sbjct: 171 ALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGH 214
Score = 55.7 bits (134), Expect = 3e-08
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 29/221 (13%)
Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+I + +SK+Y R + ++F + PG + + G +GAGK+TL +++ G E P +G I
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 376 VG----------------ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419
+ + + D L ++TV+++++ I +G +I R
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDH---HLLMDRTVYDNVAIPLIIAGASGDDIRRR 117
Query: 420 AYCSAFNFKGG--DQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
SA K G D+ + LSGG++ RV +A+ + + V+L DEPT +LD
Sbjct: 118 V--SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175
Query: 477 LEDALENF--AGCAVII-SHDRMFLDRLATHILAFEGNGHV 514
+ E F G V++ +HD + R + +L +GH+
Sbjct: 176 ILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL-SDGHL 215
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 61.6 bits (149), Expect = 4e-10
Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 29/250 (11%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNG---EAWLA 66
G++ + +VL +IN+ F P+ +I I+GP+G GKST+LR + ++ +G E +
Sbjct: 9 GVNFFYHKHQVLKNINMDF-PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL 67
Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR--YNELMMNYSEKTEEEIAKLQD 124
Y P ++L K V + ++I D + M+ + ++ +L +
Sbjct: 68 LDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS-----RLDE 122
Query: 125 IIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
+++ LWD EV+ ++LH GL +LSGG+++R+ + ++L P+++L+
Sbjct: 123 VVEKSLRQAALWD---EVK---DNLH--KSGL---ALSGGQQQRLCIARVLAIEPEVILM 171
Query: 181 DEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238
DEP + LD + +E+ ++E + +VTH+ ++W + G + Y
Sbjct: 172 DEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231
Query: 239 SAYLQMKAKR 248
+ + + KR
Sbjct: 232 EIFSRPRDKR 241
Score = 50.4 bits (120), Expect = 1e-06
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
I+ +G++ Y+ ++ N++ P I +IGP+G GK+TL R L SG G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 378 ETVCLSYVDQSRDSLEA-----------------EKTVWEDISGGDDIVKLNGHE----- 415
V L + +L+ K+++++++ G ++
Sbjct: 65 A-VLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV 123
Query: 416 INSRAYCSAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
+ +A + D + G +LSGGQ+ R+ +A++L VIL+DEP + LD +
Sbjct: 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183
Query: 475 SALEDALENF 484
+E+ ++
Sbjct: 184 MRIEELMQEL 193
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 61.7 bits (150), Expect = 5e-10
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 45/213 (21%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
+VL I+L Y + I+G +G+GKST++ I+ +DK +G +A G V L
Sbjct: 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVA-GQDVATLDA 77
Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI-------------AKLQ 123
+ L++ +E H I RY+ L+ + + E+ + Q
Sbjct: 78 D---ALAQLRRE-------HFGFIFQRYH-LLSHLTAAQNVEVPAVYAGLERKQRLLRAQ 126
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
+++ GL D E Q P+ LSGG+++RV++ + L++ ++L DEP
Sbjct: 127 ELLQRLGLED-RVEYQ--------PS------QLSGGQQQRVSIARALMNGGQVILADEP 171
Query: 184 TNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212
T LD+ E +A + LR+ V++VTHD
Sbjct: 172 TGALDSHSGEEVMAIL-HQLRDRGHTVIIVTHD 203
Score = 50.1 bits (120), Expect = 1e-06
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT---ETLSALEDALENFAGCAVII 491
+ LSGGQ+ RV +A+ L +GG VIL DEPT LD+ E + A+ L + +I+
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIV 200
Query: 492 SHD 494
+HD
Sbjct: 201 THD 203
Score = 38.9 bits (91), Expect = 0.003
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 318 IEAKGISKSY----NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
+E K I +SY ++ +S + G +V ++G +G+GK+TL +L + P SGT
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 374 IHV 376
V
Sbjct: 65 YRV 67
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 61.5 bits (149), Expect = 6e-10
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386
Y + +NL+ ++P G +IGPNG GK+TL R L+ +P G + + Y
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS 76
Query: 387 QS---RDSLEAEK-------TVWEDISGG---DDIVKLNGHEINSRAYCSAFNFKGGDQ- 432
+ R L A+ TV E ++ G + + + A A G
Sbjct: 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL 136
Query: 433 -QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT-------ETLSALEDALENF 484
Q + +LSGGQR R +A +L ++LLDEPT LD E LS L + + +
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSEL-NREKGY 195
Query: 485 AGCAVIISHDRMFLDRLATHILAF-EGN 511
AV+ HD R A+H++A EG
Sbjct: 196 TLAAVL--HDLNQACRYASHLIALREGK 221
Score = 59.6 bits (144), Expect = 2e-09
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 38/189 (20%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65
L+ +G V +++ + PD I+GPNG GKST+LR ++ + +G WL
Sbjct: 13 LTLGYGKYTVAENLTVEI-PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71
Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
+G L Q TV+E + G Q + R+ ++ EE +
Sbjct: 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-------KEDEEAV 124
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
K + + G+ L + ++ +LSGG+++R + +L ++L
Sbjct: 125 TK---AMQATGITHLADQ---------------SVDTLSGGQRQRAWIAMVLAQETAIML 166
Query: 180 LDEPTNHLD 188
LDEPT LD
Sbjct: 167 LDEPTTWLD 175
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 61.4 bits (149), Expect = 6e-10
Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 32/206 (15%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77
VL +++ S + I+G +G+GKST+L ++ G+D +G+ + G + L
Sbjct: 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79
Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA-------KLQDIIDSKG 130
+ +L K + +++ L+ +++ E +A K I+S+
Sbjct: 80 AKAELRN-----------QKLGFIYQFHHLLPDFT--ALENVAMPLLIGKKKPAEINSRA 126
Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
L ++ V + + H P++ LSGGE++RVA+ + L+++P L+L DEPT +LDA
Sbjct: 127 L-EMLAAVGLEHRANHRPSE------LSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179
Query: 191 TIAWMEKYLREYS----GAVLMVTHD 212
+ + L E + A L+VTHD
Sbjct: 180 NADSIFQLLGELNRLQGTAFLVVTHD 205
Score = 57.1 bits (138), Expect = 1e-08
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 315 HVVIEAKGISKSYND-RLLID---NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
++++ + K Y + + D N+SF + G ++ ++G +G+GK+TL +L G ++P
Sbjct: 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62
Query: 371 SG-TIHVGETVC--------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE 415
SG I G+ + L ++ Q L + T E+++ I K E
Sbjct: 63 SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL-PDFTALENVAMPLLIGKKKPAE 121
Query: 416 INSRAYCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD--- 470
INSRA G + R LSGG+R RV +A+ L + ++L DEPT +LD
Sbjct: 122 INSRAL-EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
Query: 471 TETLSALEDALENFAGCA-VIISHDRMFLDRL 501
+++ L L G A ++++HD R+
Sbjct: 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 61.4 bits (150), Expect = 6e-10
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTH 211
SLSGGEK+RVA+ + LL++P+LLL+DEP LD E + ++E+ RE + +L V+H
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187
Score = 48.7 bits (117), Expect = 4e-06
Identities = 62/217 (28%), Positives = 85/217 (39%), Gaps = 55/217 (25%)
Query: 340 LPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRD-SLEAEKT- 397
LP GI + G +GAGKT+L ++G P G I + V D + L EK
Sbjct: 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV---LFDAEKGICLPPEKRR 77
Query: 398 ---VWED--------ISGG-------------DDIVKLNGHEINSRAYCSAFNFKGGDQQ 433
V++D + G D IV L G E Y
Sbjct: 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG---------- 127
Query: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAV 489
SLSGG++ RV + + L + ++L+DEP LD E L LE +
Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 490 IISHDRMFLD---RLATHILAFEGNGHVEWFEGNFEE 523
+SH LD RLA ++ E G V+ F G EE
Sbjct: 184 YVSHS---LDEILRLADRVVVLE-QGKVKAF-GPLEE 215
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 61.4 bits (149), Expect = 6e-10
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 51/215 (23%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----------EYNGEAWLAT 67
KKV DI LS Y A I+GP+G GKST LR + ++ ++GE +
Sbjct: 56 KKVNADI-LSKYVTA---IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED-IYG 110
Query: 68 GFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
FT +G + Q+P K++ +NI G I D+ K EEI
Sbjct: 111 KFTDEVLLRKKIGMVFQKPN-PFPKSIFDNIAYG-PRLHGINDK----------KQLEEI 158
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
++ + LWD EV ++ N LSGG+++R+ + + L P++LL
Sbjct: 159 --VEKSLRKAALWD---EVSDRLDK--------NALGLSGGQQQRLCVARTLAVEPEILL 205
Query: 180 LDEPTNHLDAETIAWMEKYLREYSGA--VLMVTHD 212
LDEPT+ LD + A +E ++E G+ +++VTH+
Sbjct: 206 LDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
Score = 46.4 bits (110), Expect = 2e-05
Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 315 HVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD-- 370
HVV AK S Y + + ++ + + +IGP+G GK+T R + D P
Sbjct: 39 HVV--AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCH 96
Query: 371 -SGTIHV-GETVCLSYVDQS--RDSLEA--------EKTVWEDISGGDDIVKLNG----- 413
+G + GE + + D+ R + K+++++I+ G +L+G
Sbjct: 97 TTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGP---RLHGINDKK 153
Query: 414 --HEINSRAYCSAFNF-KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469
EI ++ A + + D+ + LSGGQ+ R+ +A+ L ++LLDEPT+ L
Sbjct: 154 QLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSAL 213
Query: 470 DTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEY 524
D + + +ED ++ G +I++H+ R++ + + F +EG E+
Sbjct: 214 DPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFF--------YEGVLVEH 262
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 61.2 bits (149), Expect = 7e-10
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 45/217 (20%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY-----------NGEAW 64
+G L +INL + +GP+G GKST+LR + + Y +GE
Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82
Query: 65 LATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
L VG + Q+P ++ +NI GV + + + +E E
Sbjct: 83 LTPKQDIALLRAKVGMVFQKP-TPFPMSIYDNIAFGVRLFEKL---------SRAEMDE- 131
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
+++ + LW+ EV+ + LH SLSGG+++R+ + + + P++
Sbjct: 132 ---RVEWALTKAALWN---EVK---DKLHQSGY-----SLSGGQQQRLCIARGIAIRPEV 177
Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
LLLDEP + LD + +E+ + E V++VTH+
Sbjct: 178 LLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214
Score = 41.5 bits (98), Expect = 6e-04
Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RM--LTGDESPDS 371
I+ + ++ Y + N++ + + IGP+G GK+TL RM L ++ +
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG 73
Query: 372 GTIHVGETVCLSYVDQSRDSLEAE------------KTVWEDISGGDDIVKLNGHEINSR 419
+ GE + D + L A+ +++++I+ G V+L E SR
Sbjct: 74 EILLDGENILTPKQDIAL--LRAKVGMVFQKPTPFPMSIYDNIAFG---VRL--FEKLSR 126
Query: 420 AYC----------SAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
A +A + D+ + G SLSGGQ+ R+ +A+ + V+LLDEP +
Sbjct: 127 AEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186
Query: 469 LD 470
LD
Sbjct: 187 LD 188
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 60.2 bits (146), Expect = 1e-09
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 317 VIEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+I K +S Y + ++SF +P G ++G NG+GK+T+ +++ G E SG I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 375 -----------------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDD---IVKLNGH 414
H+G V Q+ D+ V D++ G + + H
Sbjct: 67 FYNNQAITDDNFEKLRKHIG------IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120
Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
S A + D + +LSGGQ+ RV +A +L +VI+LDE T+ LD +
Sbjct: 121 RRVSEALKQVDMLERADYEPN--ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 475 SAL 477
L
Sbjct: 179 QNL 181
Score = 51.3 bits (123), Expect = 6e-07
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 45/207 (21%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE------YNGEAWLATGFT----- 70
L D++ + I+G NG+GKSTI ++M GI+K YN +A F
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 71 VGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129
+G + Q P + VK ++ G + N++ +E ++ + +
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFG--------------LENHAVPYDEMHRRVSEAL--- 127
Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD- 188
+V + + + P +LSGG+K+RVA+ +L +P +++LDE T+ LD
Sbjct: 128 ------KQVDMLERADYEP------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 189 ---AETIAWMEKYLREYSGAVLMVTHD 212
+ + K E++ ++ +THD
Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITHD 202
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 59.8 bits (145), Expect = 2e-09
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+++ +G+S + +R + DN+S +P G I ++GP+G GKTTL R++ G +PD G I
Sbjct: 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Score = 56.3 bits (136), Expect = 2e-08
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 32/215 (14%)
Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67
M G+S G++ + D+I+L+ P KI I+GP+G GK+T+LR++ G +GE
Sbjct: 10 MRGVSFTRGNRCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF-D 67
Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM--MNYSEKTE---EEIAKL 122
G + P + S+ + V + ++L + L MN + E +L
Sbjct: 68 GENI------PAMSRSR------LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL 115
Query: 123 QDIIDSKGLWDLETEVQVAIESLHCP-ADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181
+ L + V + +E++ A L + LSGG RR AL + + PDL++ D
Sbjct: 116 PAPL-------LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168
Query: 182 EPTNHLDAETIAWMEKYLREYSGAV----LMVTHD 212
EP D T+ + K + E + A+ ++V+HD
Sbjct: 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Score = 27.8 bits (62), Expect = 7.5
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---LSALEDALENFAGCA-VIISHD 494
LSGG R LA+ + ++I+ DEP D T L L L + G V++SHD
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 59.5 bits (144), Expect = 2e-09
Identities = 64/252 (25%), Positives = 111/252 (44%), Gaps = 49/252 (19%)
Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-----IMAGIDKE 58
KF L +GS V+ ++L + ++GP+G GKST+LR + +
Sbjct: 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 59 YNGEAWL-------------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYN 105
GE L VG + Q P T+ +N+ GV + N
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV--------KLN 113
Query: 106 ELMMNYSEKTEEEIAKLQD-IIDSKGLWDLETEVQVAIESLHCPADGLN--ITSLSGGEK 162
L+ K+++E+ + + + LWD EV+ D LN ++LSGG++
Sbjct: 114 GLV-----KSKKELDERVEWALKKAALWD---EVK----------DRLNDYPSNLSGGQR 155
Query: 163 RRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVT 220
+R+ + + L P +LL+DEPT ++D A +E+ L E +++VTH V+
Sbjct: 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS 215
Query: 221 NWILEVDRGKGI 232
+++ + GK I
Sbjct: 216 DYVAFLYLGKLI 227
Score = 53.3 bits (128), Expect = 2e-07
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 38/195 (19%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT-----GDESPDSG 372
IE + Y +I + K+P G+ ++GP+G GK+TL R +E+ G
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64
Query: 373 TIHV-GETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIVKLNG--- 413
+ + G + VD +E + T++++++ G VKLNG
Sbjct: 65 EVRLFGRNIYSPDVD----PIEVRREVGMVFQYPNPFPHLTIYDNVAIG---VKLNGLVK 117
Query: 414 --HEINSRAYCSAFNFKGGDQ-QQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
E++ R + D+ + R+ +LSGGQR R+ +A+ L ++L+DEPT
Sbjct: 118 SKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 467 NDLDTETLSALEDAL 481
++D + +E+ L
Sbjct: 178 ANIDPVGTAKIEELL 192
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 59.3 bits (143), Expect = 2e-09
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 25/247 (10%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+IE + ++ Y D ++N++ K+ I +IGP+G GK+T R L G
Sbjct: 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKI 65
Query: 376 VGETVC--LSYVDQSRDSLEAEK--------------TVWEDIS------GGDDIVKLNG 413
G + + + D LE + +++++IS G D KL+
Sbjct: 66 EGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDE 125
Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
S + +N SLSGGQ+ R+ +A+ L NVIL+DEPT+ LD +
Sbjct: 126 IVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
Query: 474 LSALEDALENF--AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531
+E+ + N + +I++H+ R++ AF NG +E E + K ++
Sbjct: 186 TGKIEELIINLKESYTIIIVTHNMQQAGRISDRT-AFFLNGCIEEESSTDELFFNPKNTK 244
Query: 532 SSRVLSG 538
+ +SG
Sbjct: 245 TEEYISG 251
Score = 56.6 bits (136), Expect = 1e-08
Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 57/235 (24%)
Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGID 56
+ I L+ + K L++IN+ ++ ++GP+G GKST LR ++ GI
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 57 KE----YNGEAWLATGFTV-------GYLPQEPQLDLSKTVKENI-----IEGVAHKQAI 100
E Y G+ + F + G + Q P L ++ +NI I G K+ +
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKL 123
Query: 101 LDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGG 160
E E+ + K LW+ EV+ + + N SLSGG
Sbjct: 124 -----------DEIVEQSLKK-------SALWN---EVKDKLNT--------NALSLSGG 154
Query: 161 EKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTHD 212
+++R+ + + L P+++L+DEPT+ LD + +E+ L+E S +++VTH+
Sbjct: 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHN 208
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 59.1 bits (143), Expect = 3e-09
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 45/181 (24%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT-------V 71
+K L D++++F P A I G NG GKS++LR++AGI + +G +
Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC 72
Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA--KLQDIIDSK 129
Y+ L L TV EN L ++E+ N +E I KL D++D K
Sbjct: 73 TYIGHNLGLKLEMTVFEN-----------LKFWSEIY-NSAETLYAAIHYFKLHDLLDEK 120
Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
SLS G ++ VA+ +L+ DL LLDE +L
Sbjct: 121 ------------------------CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156
Query: 190 E 190
E
Sbjct: 157 E 157
Score = 47.9 bits (114), Expect = 6e-06
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH------- 375
+ + + L D LS P I + G NG GK++L RM+ G P SG I+
Sbjct: 7 LQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65
Query: 376 -VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAFNFKGGD- 431
+ + C +Y+ + L+ E TV+E++ +I NS Y + FK D
Sbjct: 66 NIAKPYC-TYIGHNL-GLKLEMTVFENLKFWSEIY-------NSAETLYAAIHYFKLHDL 116
Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL---ENFAGCA 488
++ SLS G + V +A+++ ++ LLDE +L E L + + N G
Sbjct: 117 LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV 176
Query: 489 VIISH 493
++ SH
Sbjct: 177 LLSSH 181
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 58.7 bits (142), Expect = 4e-09
Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 54/249 (21%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------------------IM 52
L+ +GSK++L DINL Y +GP+G GKST LR +
Sbjct: 10 NLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI 69
Query: 53 AGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNEL 107
GID + VG + Q+P K++ +N+ + G+A + LD
Sbjct: 70 DGIDVYSVDTNVVLLRAKVGMVFQKPN-PFPKSIYDNVAYGPKLHGLAKNKKKLD----- 123
Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167
E E+ + + GLW+ E+ ++ + LSGG+++R+ +
Sbjct: 124 -----EIVEKSLTSV-------GLWE---ELGDRLKD--------SAFELSGGQQQRLCI 160
Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILE 225
+ + P +LL+DEP + LD +E ++E +++VTH V++ +
Sbjct: 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAF 220
Query: 226 VDRGKGIPY 234
G+ + Y
Sbjct: 221 FQSGRIVEY 229
Score = 36.7 bits (85), Expect = 0.016
Identities = 48/237 (20%), Positives = 97/237 (40%), Gaps = 57/237 (24%)
Query: 320 AKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPDSGTIHVG 377
K ++ Y + ++ +++ + + IGP+G GK+T R D P+ G
Sbjct: 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV--KG 65
Query: 378 ETVCLSYVDQSRDS----LEAE------------KTVWEDISGG-------------DDI 408
E S D+ L A+ K+++++++ G D+I
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEI 125
Query: 409 VKLN------GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILL 462
V+ + E+ R SAF LSGGQ+ R+ +A+ + ++L+
Sbjct: 126 VEKSLTSVGLWEELGDRLKDSAFE------------LSGGQQQRLCIARAIAVKPTMLLM 173
Query: 463 DEPTNDLDTETLSALEDALE----NFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515
DEP + LD + +E+ ++ NF ++++H +++ + F+ VE
Sbjct: 174 DEPCSALDPVATNVIENLIQELKKNFT--IIVVTHSMKQAKKVSDRVAFFQSGRIVE 228
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 58.1 bits (140), Expect = 6e-09
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 49/219 (22%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-----DKEYNGEAWLATGF- 69
+G L I++ + + +GP+G GKST LR+ + GE G
Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRN 71
Query: 70 -------------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMN-YSEKT 115
VG + Q P K++ EN+ G+ R N + N + +
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPN-PFPKSIFENVAYGL--------RVNGVKDNAFIRQR 122
Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175
EE K LWD EV+ ++ + +LSGG+++R+ + + + SP
Sbjct: 123 VEETLK------GAALWD---EVKDKLKE--------SAFALSGGQQQRLCIARAMAVSP 165
Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
+LL+DEP + LD + A +E+ + E +++VTH+
Sbjct: 166 SVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204
Score = 55.8 bits (134), Expect = 3e-08
Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPDS-- 371
V I+A+ ++ Y D + +S ++ +V IGP+G GK+T R+ D P +
Sbjct: 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 372 -GTIHV-GETVCLS--YVDQSRDSLEA--------EKTVWEDISGGDDIVKLNGHEINSR 419
G I + G + VD+ R ++ K+++E+++ G +++NG +
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG---LRVNG--VKDN 116
Query: 420 AYCSAF---NFKGG---DQ-----QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
A+ KG D+ ++ +LSGGQ+ R+ +A+ + +V+L+DEP +
Sbjct: 117 AFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176
Query: 469 LDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526
LD + + +E+ + VI++H+ R++ F + G EY+
Sbjct: 177 LDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFF--------YMGEMVEYDD 228
Query: 527 DK 528
K
Sbjct: 229 TK 230
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 58.1 bits (141), Expect = 6e-09
Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 50/174 (28%)
Query: 330 RLLID-NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS----- 383
R L D N+S P G V +IG G+GK+TL + L G P SGT+ +GE V +
Sbjct: 21 RALYDVNVSI--PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 384 ----------YVDQSRDSLEAEKTVWEDISGG---------------DDIVKLNG--HEI 416
V Q + E+TV +DI G ++++L G E+
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL 138
Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+R S F LSGGQ RV +A +L V++LDEPT LD
Sbjct: 139 LAR---SPFE------------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Score = 52.7 bits (127), Expect = 2e-07
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 52/215 (24%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA----TGFT---- 70
++ L D+N+S + + I+G G+GKST+L+ + G+ + +G + T
Sbjct: 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKK 79
Query: 71 -------VGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122
VG + Q P+ L +TV+++I G MN+ E+ K
Sbjct: 80 LKPLRKKVGIVFQFPEHQLFEETVEKDICFGP--------------MNFGVSEEDAKQKA 125
Query: 123 QDIIDSKGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
+++I+ GL E L P + LSGG+ RRVA+ +L P++L+L
Sbjct: 126 REMIELVGL----------PEELLARSPFE------LSGGQMRRVAIAGVLAMEPEVLVL 169
Query: 181 DEPTNHLDA----ETIAWMEKYLREYSGAVLMVTH 211
DEPT LD E + K +E ++VTH
Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 57.8 bits (140), Expect = 6e-09
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 38/222 (17%)
Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS-GTIHVGETVCLSY 384
S +R + N++ +P G +V ++G G GKT+L + G+ P S ++ + TV +Y
Sbjct: 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTV--AY 683
Query: 385 VDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN----------FKGGDQQQ 434
V Q A TV ++I L G + Y A + GGD +
Sbjct: 684 VPQVSWIFNA--TVRDNI--------LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTE 733
Query: 435 RIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL-----SALEDALENFA 485
IG ++SGGQ+ RV +A+ + S +V + D+P + LD ++D L
Sbjct: 734 -IGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG-- 790
Query: 486 GCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKD 527
V++++ FL ++ IL EG + EG +EE +
Sbjct: 791 KTRVLVTNQLHFLSQVDRIILVHEG---MIKEEGTYEELSNN 829
Score = 56.3 bits (136), Expect = 2e-08
Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 82/301 (27%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ATGFT---- 70
VL ++ P K+GI+G GAGKS++L + I + G + G
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 71 -VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE-EIAKLQDII-- 126
+G +PQ P L S TV+ N LD +NE N ++ E E A L+D+I
Sbjct: 1314 VLGIIPQAPVL-FSGTVRFN-----------LDPFNE--HNDADLWESLERAHLKDVIRR 1359
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
+S G L+ EV A E + S G+++ ++L + LL +L+LDE T
Sbjct: 1360 NSLG---LDAEVSEAGE------------NFSVGQRQLLSLARALLRRSKILVLDEATAA 1404
Query: 187 LDAETIAWMEKYLRE--YSGAVLMVTH--------DRYFLDNVTNWILEVDRGKGIPY-- 234
+D T A ++K +RE S +L++ H DR IL +D G+ + +
Sbjct: 1405 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILVLDAGRVVEFDT 1455
Query: 235 -----QGNYSAYLQM----------KAKRMAQENREEISR---QKAIERERDWIVSSPKA 276
SA+ +M + + E+ KA++ +R W+ SS A
Sbjct: 1456 PENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWA 1515
Query: 277 R 277
Sbjct: 1516 A 1516
Score = 52.0 bits (125), Expect = 4e-07
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 35/268 (13%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76
+ L +INL + + I+G G GK++++ M G + + + G TV Y+PQ
Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-TVAYVPQ 686
Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136
+ + TV++NI+ G +RY + ++ LQ +D DL T
Sbjct: 687 VSWI-FNATVRDNILFGSPFDP---ERYERAI---------DVTALQHDLDLLPGGDL-T 732
Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWM- 195
E+ G+NI SGG+K+RV++ + + S+ D+ + D+P + LDA +
Sbjct: 733 EIG---------ERGVNI---SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 196 EKYLR-EYSGAV-LMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY---SAYLQMKAKRMA 250
+K ++ E G ++VT+ +FL V IL V G I +G Y S + K M
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIIL-VHEGM-IKEEGTYEELSNNGPLFQKLME 838
Query: 251 QENREEISRQKAIERERDWIVSSPKARQ 278
+ E ++ E E D S P A
Sbjct: 839 NAGKMEEYVEENGEEEDDQTSSKPVANG 866
Score = 36.6 bits (85), Expect = 0.015
Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 60/205 (29%)
Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC-------------L 382
LSF++ P VG++G GAGK+++ L + G I + C L
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG--CDISKFGLMDLRKVL 1315
Query: 383 SYVDQS--------RDSLE-----AEKTVWEDISGG--DDIVKLNGHEINSRAYCSAFNF 427
+ Q+ R +L+ + +WE + D+++ N +++ + NF
Sbjct: 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375
Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL------ 481
S GQR + LA+ L +++LDE T +D T DAL
Sbjct: 1376 ------------SVGQRQLLSLARALLRRSKILVLDEATAAVDVRT-----DALIQKTIR 1418
Query: 482 ENFAGCA-VIISHDRMFLDRLATHI 505
E F C +II+H RL T I
Sbjct: 1419 EEFKSCTMLIIAH------RLNTII 1437
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 57.7 bits (139), Expect = 7e-09
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 59/224 (26%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----EYNGEAWLATGF- 69
+G K+ L+DINL Y + ++GP+G GKST LR + ++ + GE L
Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73
Query: 70 ------------TVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYS 112
VG + Q+P ++ +N+ I G+ K+ +
Sbjct: 74 YDKDVDVVELRKRVGMVFQKPN-PFPMSIYDNVAYGPRIHGIKDKKEL-----------D 121
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
+ E + K LWD EV+ ++ + LSGG+++R+ + + +
Sbjct: 122 KIVEWALKK-------AALWD---EVKDDLKK--------SALKLSGGQQQRLCIARTIA 163
Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
PD++L+DEPT+ LD + +E + +EY+ +++VTH+
Sbjct: 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIVTHN 205
Score = 44.6 bits (105), Expect = 6e-05
Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML------------ 363
+ +E+K ++ Y ++ +++++ + I +IGP+G GK+T R L
Sbjct: 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 364 TGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTV--------------WEDISGGDDI- 408
G+ D I+ D+ D +E K V +++++ G I
Sbjct: 63 EGEVLLDGKNIY----------DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH 112
Query: 409 ---VKLNGHEINSRAYCSA--FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463
K +I A A ++ D ++ LSGGQ+ R+ +A+ + +VIL+D
Sbjct: 113 GIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172
Query: 464 EPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAF 508
EPT+ LD + +ED + VI++H+ R++ + F
Sbjct: 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFF 219
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 57.7 bits (140), Expect = 7e-09
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+ G+ + L ++N++ ++ IV +IGPNGAGKTT+F LTG P GTI
Sbjct: 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62
Score = 54.6 bits (132), Expect = 7e-08
Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70
GL FG ++++NL + ++GPNGAGK+T+ + G K G L G
Sbjct: 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL-RGQH 68
Query: 71 VGYLP-------------QEPQLDLSKTVKENIIEGVA-HKQAILDRYNELMMNYSEKTE 116
+ LP Q +L TV EN++ VA H+Q ++ L+ + +
Sbjct: 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLL--VAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
E + +D W LE +V + G +L+ G++RR+ + + +++ P+
Sbjct: 127 E-----SEALDRAATW-LE---RVGLLEHANRQAG----NLAYGQQRRLEIARCMVTQPE 173
Query: 177 LLLLDEPTNHLD-AETI---AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232
+L+LDEP L+ ET + + E++ VL++ HD + +++ I V++G +
Sbjct: 174 ILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233
Score = 34.6 bits (80), Expect = 0.060
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPT---NDLDTETLSALEDALENFAGCAV-IIS 492
G+L+ GQ+ R+ +A+ + + +++LDEP N +T+ L L L N V +I
Sbjct: 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211
Query: 493 HD 494
HD
Sbjct: 212 HD 213
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 57.7 bits (139), Expect = 8e-09
Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 21/209 (10%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----EYNGEAWLA 66
L+ F +L ++NL ++ ++GP+G GKST +R + ++ + G +L
Sbjct: 9 LNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL- 67
Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK-LQDI 125
G + Y P ++L K V + ++I D + + E E+ I + +++
Sbjct: 68 DGVDI-YDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEES 126
Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185
+ + LWD EV+ + L A GL SGG+++R+ + + + SP+++L+DEP +
Sbjct: 127 LKAAALWD---EVK---DKLDKSALGL-----SGGQQQRLCIARTIAVSPEVILMDEPCS 175
Query: 186 HLDAETIAWMEKYLREYSG--AVLMVTHD 212
LD + +E + + +++VTH+
Sbjct: 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
Score = 49.2 bits (117), Expect = 2e-06
Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 33/226 (14%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
IE + ++ ++D ++ N++ +P + +IGP+G GK+T R L G H
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62
Query: 377 GETVCLSYVDQSRDSLEA-----------------EKTVWEDISGG---------DDIVK 410
G + L VD +++ K+++++++ G D I +
Sbjct: 63 GH-IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ + A K + +G LSGGQ+ R+ +A+ + VIL+DEP + LD
Sbjct: 122 RVEESLKAAALWD--EVKDKLDKSALG-LSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
Query: 471 TETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHV 514
+ + +ED + VI++H+ R++ + +F NG +
Sbjct: 179 PISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYT-SFFLNGEI 223
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 57.3 bits (138), Expect = 1e-08
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 44/217 (20%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------------------IMAGIDK 57
FG + D+++ F ++ I+GP+G GKST+LR ++ D
Sbjct: 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73
Query: 58 EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
G ++ VG + Q+P + ++ +N+I G +N E
Sbjct: 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK-------------LNGRVNRSE 120
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
++ + LWD EV+ ++S N LSGG+++R+ + + + P++
Sbjct: 121 ADEIVESSLKRVALWD---EVKDRLKS--------NAMELSGGQQQRLCIARTIAVKPEV 169
Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
+L+DEP + LD + +E+ + E +++VTH+
Sbjct: 170 ILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
Score = 44.6 bits (105), Expect = 7e-05
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 31/214 (14%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---SGTIHVGETVCLSYVDQ 387
+ ++S P + +IGP+G GK+T+ R + D P +G I + +T D+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT---DIYDR 76
Query: 388 SRDSLEAEKTV---------WEDISGGDDIV---KLNGH----EINSRAYCSAFNFKGGD 431
D + + V + +S D+++ KLNG E + S D
Sbjct: 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWD 136
Query: 432 Q-QQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG 486
+ + R+ S LSGGQ+ R+ +A+ + VIL+DEP + LD + +E+ +E
Sbjct: 137 EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE 196
Query: 487 --CAVIISHDRMFLDRLATHILAFEGNGHVEWFE 518
+I++H+ R++ + F VE E
Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 57.0 bits (138), Expect = 1e-08
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 57/226 (25%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKST----ILRIMAGIDKEYNGEAW--- 64
L + V+ +I+ + P +G++G +G+GKST +LR++ GE W
Sbjct: 292 LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIWFDG 346
Query: 65 --LATGFTVGYLP---------QEPQLDLSK--TVKENIIEGVAHKQAILDRYNELMMNY 111
L LP Q+P L+ V + I EG+ Q L +
Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTL--------SA 398
Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLH-CPADGLNITSLSGGEKRRVALCKL 170
+++ ++ IA ++ EV + E+ H PA+ SGG+++R+A+ +
Sbjct: 399 AQREQQVIAVME-------------EVGLDPETRHRYPAE------FSGGQRQRIAIARA 439
Query: 171 LLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
L+ P L++LDEPT+ LD A+ +A ++ +++ A L ++HD
Sbjct: 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485
Score = 55.9 bits (135), Expect = 3e-08
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 59/223 (26%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG----AVLMVTHD 212
LSGGE++RV + LL+ P+LL+ DEPT LD A + + LRE +L +TH+
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 213 ----RYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERD 268
R D V M+ R ++NR
Sbjct: 217 LSIVRKLADRVA----------------------VMQNGRCVEQNR------------AA 242
Query: 269 WIVSSPKARQSKSKARIRSYEELVESAAHRHP----GNAQIIIPVGKRLGHVVIEAKGIS 324
+ S+P ++ + V P Q+ P+ K + ++ +
Sbjct: 243 TLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVV 302
Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRML 363
K N+SF L PG +G++G +G+GK+T L R++
Sbjct: 303 K---------NISFTLRPGETLGLVGESGSGKSTTGLALLRLI 336
Score = 38.5 bits (90), Expect = 0.004
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---LSALEDALENFAGCAVI-IS 492
SGGQR R+ +A+ L ++I+LDEPT+ LD + AL +L+ A + IS
Sbjct: 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS 483
Query: 493 HD 494
HD
Sbjct: 484 HD 485
Score = 32.0 bits (73), Expect = 0.40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
LSGG+R RV +A L + +++ DEPT LD
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 56.7 bits (137), Expect = 1e-08
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 29/203 (14%)
Query: 317 VIEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG----DESPD 370
++E K +S +Y D + ++++SF +P G +IG NG+GK+T+ +++ G D++P+
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 371 SGTIHVGETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEI---- 416
S G T+ + V Q+ D+ TV +D++ G + + E+
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 417 -NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----T 471
+ A ++ + +LSGGQ+ RV +A IL +I+LDE T+ LD
Sbjct: 125 RDVLADVGMLDYIDSEPA----NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180
Query: 472 ETLSALEDALENFAGCAVIISHD 494
+ L + + + I+HD
Sbjct: 181 QILKLIRKLKKKNNLTVISITHD 203
Score = 44.0 bits (104), Expect = 9e-05
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 48/213 (22%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG--IDKEYNGEAWLATGFT------ 70
K L+DI+ S + ++G NG+GKSTI +++ G + + G T
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79
Query: 71 ------VGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
VG + Q P + TV +++ G+ ++ M+ ++ L
Sbjct: 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV----PRPEMIKIVRDVLADVGML- 134
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
D IDS+ PA+ LSGG+K+RVA+ +L P +++LDE
Sbjct: 135 DYIDSE------------------PAN------LSGGQKQRVAIAGILAVEPKIIILDES 170
Query: 184 TNHLDAETIAWMEKYLREYSG----AVLMVTHD 212
T+ LD + K +R+ V+ +THD
Sbjct: 171 TSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 56.7 bits (137), Expect = 1e-08
Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 48/224 (21%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKE--Y 59
L+ +GS ++D+NL+ P + +GP+G GKST+LR + A ++ E
Sbjct: 9 DLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68
Query: 60 NGEAWLATGF-------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112
+GE G T+G + Q P + ++++N++ G+ +L +
Sbjct: 69 DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL-----------KLNGVRN 117
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
+K +E+ + + LW+ EV+ + L P GL SGG+++R+ + + +
Sbjct: 118 KKDLDELV--EKSLRGANLWN---EVK---DRLDKPGGGL-----SGGQQQRLCIARAIA 164
Query: 173 SSPDLLLLDEPTNHLDA-ETIA---WMEKYLREYSGAVLMVTHD 212
PD+LL+DEP + LD T+A + + ++Y+ +++VTH+
Sbjct: 165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT--IVIVTHN 206
Score = 51.3 bits (123), Expect = 7e-07
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 37/208 (17%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR---------------- 361
I+ K ++ Y +++++ + P + IGP+G GK+T+ R
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 362 --MLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419
+L G++ G V + V Q + ++ +++ G +KLNG
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPT-MSIRDNVVAG---LKLNGVRNKKD 120
Query: 420 AYCSA-FNFKGG-------DQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ +G D+ + G LSGGQ+ R+ +A+ + +V+L+DEP + LD
Sbjct: 121 LDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
Query: 471 TETLSALEDAL----ENFAGCAVIISHD 494
+ A+ED + +++ VI++H+
Sbjct: 181 PISTLAIEDLINELKQDYT--IVIVTHN 206
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 56.8 bits (137), Expect = 1e-08
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCL--------- 382
+DN+SF+L G V ++G G+GK+TL + P SGTI + G +
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 383 -----SYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437
S V Q ++ E TV +D+ G + E +A + K G + I
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKAL--KWLKKVGLSEDLIS 140
Query: 438 ----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVI- 490
LSGGQ RV +A ++ ++ LDEP LD E + +++ AG VI
Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200
Query: 491 ISHDRMFLDRLATHILAFEGNGHV 514
++H+ + A +L E +G +
Sbjct: 201 VTHNMDDVAEYADDVLVLE-HGKL 223
Score = 55.2 bits (133), Expect = 4e-08
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
KK LD+I+ + + ++G G+GKST+++ + K +G +A G+ + P
Sbjct: 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA-GYHI-----TP 73
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII---DSKGLWDLE 135
+ +K +K+ L + L+ + E E L+D+ + G + E
Sbjct: 74 ETG-NKNLKK------------LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 136 TEVQVA--IESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191
+ + ++ + D ++ + LSGG+ RRVA+ ++ P++L LDEP LD E
Sbjct: 121 AKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180
Query: 192 IAWMEKYLREYSGA---VLMVTHDRYFLDNVTNW---ILEVDRGKGI 232
M + ++Y A V++VTH+ +D+V + +L ++ GK I
Sbjct: 181 RKEMMQLFKDYQKAGHTVILVTHN---MDDVAEYADDVLVLEHGKLI 224
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 56.5 bits (136), Expect = 2e-08
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESP-DSGTIHVGETVCLSYVDQSRDS 391
+ +++ ++P G +V ++G G GKT+L + G+ S ++ ++ + +V +YV Q
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSV--AYVPQVSWI 690
Query: 392 LEAEKTVWEDISGGDDI-VKLNGHEINSRAYCSAFNFKGGDQQQRIG----SLSGGQRGR 446
A TV E+I G D + I+ A + G IG ++SGGQ+ R
Sbjct: 691 FNA--TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748
Query: 447 VHLAKILKSGGNVILLDEPTNDLDTETL-----SALEDALENFAGCAVIISHDRMFLDRL 501
V +A+ + S ++ + D+P + LD S ++D L+ V++++ FL +
Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK--GKTRVLVTNQLHFLPLM 806
Query: 502 ATHILAFEGNGHVEWFEGNFEEYEKD 527
IL EG + EG F E K
Sbjct: 807 DRIILVSEG---MIKEEGTFAELSKS 829
Score = 54.6 bits (131), Expect = 6e-08
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 39/204 (19%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ATGFT---- 70
VL ++ P K+G++G GAGKS++L + I + G + G T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310
Query: 71 -VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129
+ +PQ P L S TV+ NI H A D + L E A ++D+ID +
Sbjct: 1311 VLSIIPQSPVL-FSGTVRFNIDPFSEHNDA--DLWEAL----------ERAHIKDVID-R 1356
Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
+ L+ EV E+ S G+++ ++L + LL +L+LDE T +D
Sbjct: 1357 NPFGLDAEVSEGGENF------------SVGQRQLLSLARALLRRSKILVLDEATASVDV 1404
Query: 190 ETIAWMEKYLRE--YSGAVLMVTH 211
T + +++ +RE S +L++ H
Sbjct: 1405 RTDSLIQRTIREEFKSCTMLVIAH 1428
Score = 54.6 bits (131), Expect = 7e-08
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 27/172 (15%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77
SK L DINL + + I+G G GK++++ M G + + + + +V Y+PQ
Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG-ELSHAETSSVVIRGSVAYVPQV 687
Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
+ + TV+ENI+ G + +RY + ++ LQ +D DL TE
Sbjct: 688 SWI-FNATVRENILFGSDFES---ERYWRAI---------DVTALQHDLDLLPGRDL-TE 733
Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
+ G+NI SGG+K+RV++ + + S+ D+ + D+P + LDA
Sbjct: 734 IG---------ERGVNI---SGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773
Score = 40.0 bits (93), Expect = 0.002
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 39/188 (20%)
Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV--------GET---VCLSY 384
LSF + P VGV+G GAGK+++ L + G I + G T LS
Sbjct: 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314
Query: 385 VDQS--------RDSLEA-----EKTVWEDISGG--DDIVKLNGHEINSRAYCSAFNFKG 429
+ QS R +++ + +WE + D++ N +++ +G
Sbjct: 1315 IPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV------SEG 1368
Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCA 488
G+ + S GQR + LA+ L +++LDE T +D T S ++ + E F C
Sbjct: 1369 GE------NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 489 VIISHDRM 496
+++ R+
Sbjct: 1423 MLVIAHRL 1430
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 56.5 bits (136), Expect = 2e-08
Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 32/193 (16%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
VL +I+ + + G G+GKS++L ++ G + G+ + + + PQ +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK--IKHSGRISFSPQTSWI 498
Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
+ T+K+NII G+++ D Y + + + EE+IA E + V
Sbjct: 499 -MPGTIKDNIIFGLSY-----DEYRYTSVIKACQLEEDIALFP-----------EKDKTV 541
Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200
E IT LSGG++ R++L + + DL LLD P HLD T EK +
Sbjct: 542 LGEG--------GIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT----EKEIF 588
Query: 201 EYSGAVLMVTHDR 213
E LM R
Sbjct: 589 ESCLCKLMSNKTR 601
Score = 56.5 bits (136), Expect = 2e-08
Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-HVGETVCLSYVDQSRD 390
++ N+SFKL G ++ V G G+GK++L M+ G+ P G I H G +S+ Q+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR---ISFSPQT-- 495
Query: 391 SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA---------FNFKGGDQQQRIG-SLS 440
S T+ ++I I L+ E + A F K G +LS
Sbjct: 496 SWIMPGTIKDNI-----IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLS 550
Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMF--- 497
GGQR R+ LA+ + ++ LLD P LD T E + C ++ + R+
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVT----EKEIFESCLCKLMSNKTRILVTS 606
Query: 498 -LDRL--ATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVL 536
L+ L A IL G +F G F E + + SS +L
Sbjct: 607 KLEHLKKADKILLLH-EGVC-YFYGTFSELQAKRPDFSSLLL 646
Score = 54.9 bits (132), Expect = 5e-08
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 48/201 (23%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI---MAGIDKEY--NGEAWLATGF-- 69
+ VL D++ S ++G+LG G+GKST+L + + E +G +W +
Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQT 1289
Query: 70 ---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126
G +PQ+ + S T ++N LD Y + +S+ EEI K+ +
Sbjct: 1290 WRKAFGVIPQKVFI-FSGTFRKN-----------LDPYEQ----WSD---EEIWKVAE-- 1328
Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNIT------SLSGGEKRRVALCKLLLSSPDLLLL 180
E ++ IE D L+ LS G K+ + L + +LS +LLL
Sbjct: 1329 --------EVGLKSVIEQF---PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 181 DEPTNHLDAETIAWMEKYLRE 201
DEP+ HLD T+ + K L++
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQ 1398
Score = 49.9 bits (119), Expect = 1e-06
Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 30/205 (14%)
Query: 314 GHVVIEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RMLTGDE 367
G + + +G++ Y + R ++ +LSF + G VG++G G+GK+TL R+L+ +
Sbjct: 1216 GQMDV--QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEG 1273
Query: 368 -------SPDSGTIH-------VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNG 413
S +S T+ V + R +L+ + W D ++I K+
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ-WSD----EEIWKV-A 1327
Query: 414 HEINSRAYCSAFNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
E+ ++ F K G LS G + + LA+ + S ++LLDEP+ LD
Sbjct: 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387
Query: 473 TLSALEDAL-ENFAGCAVIISHDRM 496
TL + L ++F+ C VI+S R+
Sbjct: 1388 TLQIIRKTLKQSFSNCTVILSEHRV 1412
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 56.7 bits (137), Expect = 2e-08
Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 24/206 (11%)
Query: 317 VIEAKGISKSYN---DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
+IE K ++ Y ++ ++++SF + G + +IG NG+GK+T R++ G +SG
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 374 IHV-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422
I + G+ + + V Q+ D+ TV +D++ G + + E+ R
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN- 122
Query: 423 SAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSA 476
A G D ++R + LSGGQ+ RV +A + +I+LDE T+ LD E +
Sbjct: 123 EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 477 LEDALENFAGCAVIISHDRMFLDRLA 502
++ +++ + I+HD LD +A
Sbjct: 183 IKGIRDDYQMTVISITHD---LDEVA 205
Score = 45.9 bits (109), Expect = 3e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212
LSGG+K+RVA+ + P +++LDE T+ LD E I ++ +Y V+ +THD
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200
Query: 213 RYFLDNVT 220
LD V
Sbjct: 201 ---LDEVA 205
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 56.6 bits (137), Expect = 2e-08
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 67/228 (29%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKE--YNGEAW 64
+G + L INL + ++GP+G GKST LR + I+ E +G+
Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72
Query: 65 LATGFT-------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYS 112
+ VG + Q+P ++ +N+ G+ K
Sbjct: 73 YKSDIDVNQLRKRVGMVFQQPNP-FPMSIYDNVAYGPRTHGIKDK--------------- 116
Query: 113 EKTEEEIAKLQDIIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168
KL +I++ LWD EV+ + L A LSGG+++R+ +
Sbjct: 117 -------KKLDEIVEKSLKGAALWD---EVK---DRLKKSA-----LGLSGGQQQRLCIA 158
Query: 169 KLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
+ L P++LL+DEPT+ LD + +E+ ++E Y+ +++VTH+
Sbjct: 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT--IVIVTHN 204
Score = 48.5 bits (116), Expect = 4e-06
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 46/196 (23%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---SG 372
I K + Y D + ++ + + +IGP+G GK+T R L D P G
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG 63
Query: 373 TIHV-GETVCLSYVD----QSRDSLEAEK------TVWEDISGG------------DDIV 409
+ + G+ + S +D + R + ++ +++++++ G D+IV
Sbjct: 64 EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIV 123
Query: 410 K--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463
+ L G E+ R SA LSGGQ+ R+ +A+ L V+L+D
Sbjct: 124 EKSLKGAALWDEVKDRLKKSAL------------GLSGGQQQRLCIARALAVEPEVLLMD 171
Query: 464 EPTNDLDTETLSALED 479
EPT+ LD + +E+
Sbjct: 172 EPTSALDPISTLKIEE 187
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 56.0 bits (135), Expect = 2e-08
Identities = 89/399 (22%), Positives = 150/399 (37%), Gaps = 89/399 (22%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
LSGG ++RV + L P +L+ DEPT LD A+ + ++ +E S V+ +THD
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 213 RYFLDNVTNWILEVDRGKGIPY----------QGNYSAYLQMKAKRMAQENREEISRQKA 262
+ + + +L + +G+ + Q Y+ L ++ + R+
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFP 288
Query: 263 IERERDWIVSSPKARQSKSKAR--IRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEA 320
+ P Q I LV R P + ++ V R H V
Sbjct: 289 LISLEHPAKQEPPIEQDTVVDGEPILQVRNLVT----RFPLRSGLLNRV-TREVHAV--- 340
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG--- 377
+ +SF L PG + ++G +G+GK+T R L G I
Sbjct: 341 -------------EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387
Query: 378 -ETVCLSYVDQSRD-----------SLEAEKTVWEDISGGDDIVK-------LNGHEINS 418
+T+ + R SL+ +TV GD I++ L G +
Sbjct: 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTV------GDSIMEPLRVHGLLPGKAAAA 441
Query: 419 RAYCSAFNFKGGDQQQRIG-----------SLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
R +R+G SGGQR R+ +A+ L VI+ DE +
Sbjct: 442 RV---------AWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVS 492
Query: 468 DLDT----ETLSALEDALENFAGCAVIISHDRMFLDRLA 502
LD + ++ L D +F + ISHD ++R++
Sbjct: 493 ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531
Score = 33.7 bits (77), Expect = 0.13
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA----LEDALENFAGCAVI-ISH 493
LSGG R RV +A L V++ DEPT LD T+ A L L+ VI I+H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDV-TIQAQILQLIKVLQKEMSMGVIFITH 227
Query: 494 DRMFLDRLATHIL 506
D + +A +L
Sbjct: 228 DMGVVAEIADRVL 240
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 56.2 bits (135), Expect = 2e-08
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC--LSYVDQSR 389
+D L + PG G++G NGAGKTT F+MLTGD + SG V G+++ +S V Q+
Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014
Query: 390 DSLEAEKTVWEDISGGDDI---VKLNG---HEINSRAYCSAFNFKGGDQQQRI-GSLSGG 442
+ + ++G + + +L G EI A S + R+ G+ SGG
Sbjct: 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGG 2074
Query: 443 QRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVIISHDRM---- 496
+ ++ A L ++LLDEPT +D + L + + + G AV+++ M
Sbjct: 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134
Query: 497 -FLDRLATHIL-AFEGNGHVEWFEGNF 521
RLA + AF+ G ++ + F
Sbjct: 2135 ALCTRLAIMVKGAFQCLGTIQHLKSKF 2161
Score = 53.9 bits (129), Expect = 1e-07
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR 389
R +D L+ I +G NGAGKTT +LTG P SGT+ VG + +D R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 390 DSL---EAEKTVWEDISGGDDIV---KLNGH-------EINSRAYCSAFNFKGGDQQQRI 436
SL ++ ++ + I+ +L G E+ + + + K ++ Q
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-- 1060
Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISHDR 495
LSGG + ++ +A V++LDEPT+ +D + ++ D L + +G +I+S
Sbjct: 1061 -DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHH 1119
Query: 496 M 496
M
Sbjct: 1120 M 1120
Score = 53.5 bits (128), Expect = 1e-07
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 56/227 (24%)
Query: 6 IYHMAGLSKVFG--SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
I + L+KV+ S +D + + P G+LG NGAGK+T +++ G +G+A
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 64 WLA-----TGFT-----VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELM 108
+A T + +GY PQ +D T +E++ + GV ++ E +
Sbjct: 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEI------EKV 2050
Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168
N+S I S GL SL+ AD L T SGG KR+++
Sbjct: 2051 ANWS-------------IQSLGL------------SLY--ADRLAGT-YSGGNKRKLSTA 2082
Query: 169 KLLLSSPDLLLLDEPTNHLD--AETIAW--MEKYLREYSGAVLMVTH 211
L+ P L+LLDEPT +D A + W + +RE AV++ +H
Sbjct: 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSH 2128
Score = 49.2 bits (117), Expect = 3e-06
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 35/210 (16%)
Query: 12 LSKVF--GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69
L K+F + +D +N++FY + LG NGAGK+T L I+ G+ +G
Sbjct: 934 LVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV------ 987
Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY---NELMMNYSE---KTEEEIAKLQ 123
VG E LD V++++ G+ + IL + E ++ Y++ ++ EE
Sbjct: 988 LVGGKDIETNLD---AVRQSL--GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA---- 1038
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
LE E + LH + LSGG +R++++ + +++LDEP
Sbjct: 1039 ---------QLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088
Query: 184 TNHLDAETIAWMEKYLREY-SG-AVLMVTH 211
T+ +D + + L +Y SG ++M TH
Sbjct: 1089 TSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 55.6 bits (134), Expect = 3e-08
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 33/217 (15%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDK--EYNGEAW 64
+G L +++ + ++GP+G GKST LR + A ID E +G+
Sbjct: 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114
Query: 65 LATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
G VG + Q P K+++ENI G K ++ + + +
Sbjct: 115 YQDGVNLVELRKRVGMVFQSPN-PFPKSIRENISYG-PRKHGDINTGLLARLLGRDDKDA 172
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
E ++ + LWD EV ++ N LSGG+++R+ + + L P++
Sbjct: 173 EDELVERSLRQAALWD---EVNDRLDD--------NALGLSGGQQQRLCIARCLAVDPEV 221
Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
+L+DEP + LD + +E + E + V++VTH+
Sbjct: 222 ILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258
Score = 43.7 bits (103), Expect = 1e-04
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 44/208 (21%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRM--------------LTGDES 368
Y D + +S +P + +IGP+G GK+T L RM L G +
Sbjct: 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114
Query: 369 PDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGG----DDI-----VKLNGH----- 414
G V + V QS + K++ E+IS G DI +L G
Sbjct: 115 YQDGVNLVELRKRVGMVFQSPNPFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDA 172
Query: 415 --EINSRAYCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTND 468
E+ R+ A + + R+ LSGGQ+ R+ +A+ L VIL+DEP +
Sbjct: 173 EDELVERSLRQAALW--DEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASA 230
Query: 469 LDTETLSALEDALENFAG--CAVIISHD 494
LD S +ED +E A V+++H+
Sbjct: 231 LDPIATSKIEDLIEELAEEYTVVVVTHN 258
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 55.9 bits (135), Expect = 3e-08
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 51/224 (22%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA----GIDK-EYNGEAWLA 66
L +G K+ + I++ F + ++GP+G+GKST LR + ID G+
Sbjct: 26 LHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY- 84
Query: 67 TGFTV--------------GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112
G + G + Q P +K++ ENI A ++A + L
Sbjct: 85 RGIDINRKEINVYEMRKHIGMVFQRPN-PFAKSIYENIT--FALERAGVKDKKVLD---- 137
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
E E + + LWD QV + LH A +LSGG+++R+ + + +
Sbjct: 138 EIVETSLKQ-------AALWD-----QVK-DDLHKSA-----LTLSGGQQQRLCIARAIA 179
Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
PD+LL+DEP + LD + +E+ + E Y+ +++VTH+
Sbjct: 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTHN 221
Score = 39.3 bits (92), Expect = 0.003
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVIISH 493
+LSGGQ+ R+ +A+ + +++L+DEP + LD + LE+ + +N+ +I++H
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTH 220
Query: 494 DRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSG 538
+ R A+ AF G + ++ + KL ++ +SG
Sbjct: 221 NMQQAAR-ASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDYVSG 264
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
+ + K + Y + I + + I +IGP+G+GK+T R L
Sbjct: 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 55.5 bits (133), Expect = 3e-08
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386
+ R L D + ++ G +IG G+GK+TL + L G P G + VG+ V S
Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK 75
Query: 387 QSR---------------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGD 431
Q +S E+TV +D++ G + + A G
Sbjct: 76 QKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-AEKLEMVGLA 134
Query: 432 Q---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---LSALEDALENFA 485
++ LSGGQ RV +A IL V++LDEPT LD + + L +++
Sbjct: 135 DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194
Query: 486 GCAVIISH 493
V+++H
Sbjct: 195 QTVVLVTH 202
Score = 52.8 bits (126), Expect = 2e-07
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77
+ + L DI+L + ++G G+GKST+L+ + G+ + G+ +
Sbjct: 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG----------- 66
Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
+ +S T K+ I+ V K ++ ++ E S+ EE + L+D+ + + E
Sbjct: 67 -DIVVSSTSKQKEIKPVRKKVGVVFQFPE-----SQLFEETV--LKDVAFGPQNFGIPKE 118
Query: 138 VQVAIESLHCPADGLNIT-------SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
I + GL LSGG+ RRVA+ +L P++L+LDEPT LD +
Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
Query: 191 TIAWMEKY---LREYSGAVLMVTHDRYFLDNVTNW 222
M + + + V++VTH +D+V ++
Sbjct: 179 ARIEMMQLFESIHQSGQTVVLVTH---LMDDVADY 210
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 55.6 bits (134), Expect = 3e-08
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 52/223 (23%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGI----DKEYN 60
L +G + L INL ++GP+G GKST+LR ++ G+ +
Sbjct: 9 LDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMD 68
Query: 61 GEAWLAT------GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114
GE VG + Q+P ++ EN+ G+ Q I D+ K
Sbjct: 69 GEDIYGNIDVADLRIKVGMVFQKPN-PFPMSIYENVAYGL-RAQGIKDK----------K 116
Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
+E+ ++ + LWD EV+ + L A GL SGG+++R+ + + +
Sbjct: 117 VLDEV--VERSLRGAALWD---EVK---DRLKSHAFGL-----SGGQQQRLCIARTIAME 163
Query: 175 PDLLLLDEPTNHLDAETIA------WMEKYLREYSGAVLMVTH 211
PD++L+DEPT+ LD IA ME+ + Y+ +++VTH
Sbjct: 164 PDVILMDEPTSALDP--IATHKIEELMEELKKNYT--IVIVTH 202
Score = 46.4 bits (110), Expect = 2e-05
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 55/206 (26%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML------------TGDESPDS--- 371
Y + + +++ +P + +IGP+G GK+TL R L TG + D
Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72
Query: 372 -GTIHVGE-TVCLSYVDQSRDSLEAEKTVWEDISGG------------DDIVK--LNG-- 413
G I V + + + V Q + +++E+++ G D++V+ L G
Sbjct: 73 YGNIDVADLRIKVGMVFQKPNPFPM--SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA 130
Query: 414 --HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD- 470
E+ R AF LSGGQ+ R+ +A+ + +VIL+DEPT+ LD
Sbjct: 131 LWDEVKDRLKSHAF------------GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP 178
Query: 471 --TETLSALEDAL-ENFAGCAVIISH 493
T + L + L +N+ VI++H
Sbjct: 179 IATHKIEELMEELKKNYT--IVIVTH 202
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 55.0 bits (133), Expect = 5e-08
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 55/226 (24%)
Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKE--Y 59
L+ +G K+ L DI++ + +GP+G GKST+LR I+ E
Sbjct: 30 NLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89
Query: 60 NGEAWLATGF-------TVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNEL 107
+G+ VG + Q P K++ EN+ ++G+ ++ +LD
Sbjct: 90 DGQNIYDKKVDVAELRRRVGMVFQRPN-PFPKSIYENVVYGLRLQGINNR-RVLD----- 142
Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167
E E + LWD EV+ + LH A GL SGG+++R+ +
Sbjct: 143 -----EAVERSLR-------GAALWD---EVK---DRLHENAFGL-----SGGQQQRLVI 179
Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211
+ + P++LLLDEPT+ LD + +E+ + E +++VTH
Sbjct: 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
Score = 50.8 bits (122), Expect = 9e-07
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 56/218 (25%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPD 370
+E + ++ Y D+ + ++S ++P + IGP+G GK+TL R D
Sbjct: 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 371 SGTIHV-GETVCLSYVDQSRDSLEAE------------KTVWEDISGG------------ 405
G I + G+ + VD + L K+++E++ G
Sbjct: 84 EGEIRLDGQNIYDKKVDVA--ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141
Query: 406 DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459
D+ V+ L G E+ R + +AF LSGGQ+ R+ +A+ + V
Sbjct: 142 DEAVERSLRGAALWDEVKDRLHENAF------------GLSGGQQQRLVIARAIAIEPEV 189
Query: 460 ILLDEPTNDLD---TETLSALEDAL-ENFAGCAVIISH 493
+LLDEPT+ LD T + L L + VI++H
Sbjct: 190 LLLDEPTSALDPISTLKIEELITELKSKYT--IVIVTH 225
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 55.1 bits (132), Expect = 5e-08
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 45/214 (21%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID-----KEYNGEAWLATGFT-- 70
+K VL D+NL + +GP+G GKST LR + ++ + GE + T
Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153
Query: 71 -----------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
+G + Q+P ++ +N+ G I DR K E+I
Sbjct: 154 KKISSLELRTRIGMVFQKPT-PFEMSIFDNVAYG-PRNNGINDR----------KILEKI 201
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
++ + S LWD EV+ ++ +LSGG+++R+ + + + P++LL
Sbjct: 202 --VEKSLKSAALWD---EVKDDLDKAG--------NALSGGQQQRLCIARAIALEPEVLL 248
Query: 180 LDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211
+DEPT+ LD A +E+ + E ++++VTH
Sbjct: 249 MDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282
Score = 48.2 bits (114), Expect = 5e-06
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 26/218 (11%)
Query: 317 VIEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
V E + + Y +R ++ +L+ + + IGP+G GK+T R L GT
Sbjct: 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTS 139
Query: 375 HVGETVCLSYVDQSR--DSLEA--------------EKTVWEDISGGDDIVKLNGHEI-- 416
H GE L +S+ SLE E +++++++ G +N +I
Sbjct: 140 HEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE 199
Query: 417 ----NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
S + ++ D + +LSGGQ+ R+ +A+ + V+L+DEPT+ LD
Sbjct: 200 KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 473 TLSALEDALENFAG--CAVIISHDRMFLDRLATHILAF 508
+ +E+ + +I++H R++ + F
Sbjct: 260 ATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFF 297
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 54.6 bits (131), Expect = 6e-08
Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 62/285 (21%)
Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILR-------IMAGI 55
++ + G+ +G L D++L P KI +GP+G GKST+LR ++ G
Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKI-PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA 76
Query: 56 DKE----------YNGEA-WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY 104
E Y+ + + VG + Q P K++ ENI A R
Sbjct: 77 KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN-PFPKSIYENI--------AFAPRA 127
Query: 105 NELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164
N N E E+ + + +W+ EV+ ++ G T+LSGG+++R
Sbjct: 128 NGYKGNLDELVEDSLRR-------AAIWE---EVKDKLK-----EKG---TALSGGQQQR 169
Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTHDRYFLDNVTNW 222
+ + + + PD+LL+DEP + LD + +E+ E ++MVTH+ V +W
Sbjct: 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADW 229
Query: 223 I----LEVD-----RGKGIPYQGNYSAYLQMKAKRMAQENREEIS 258
E+D RGK + +S QM +E RE IS
Sbjct: 230 TAFFNTEIDEYGKRRGKLV----EFSPTEQMFGSPQTKEAREYIS 270
Score = 50.8 bits (121), Expect = 9e-07
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 315 HVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPDS- 371
H V E +G+ Y L + ++ K+P I+ IGP+G GK+TL R D P +
Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK 77
Query: 372 --GTIHVGETVCLSYVDQSRDSLEAE--------------KTVWEDISGGDDIVKLNGHE 415
G + + + D +S++ K+++E+I+ + NG++
Sbjct: 78 VEGRLLYRDR---NIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAP---RANGYK 131
Query: 416 IN-------SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468
N S + + +++ +LSGGQ+ R+ +A+ + +V+L+DEP +
Sbjct: 132 GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191
Query: 469 LDTETLSALED 479
LD + +E+
Sbjct: 192 LDPISTRQVEE 202
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 54.3 bits (131), Expect = 7e-08
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGIDKEYNGEAW 64
K LDD+NL + ILG NG+GKSTI + M G+D W
Sbjct: 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81
Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124
G + Q P + T+ E E VA N EE ++ +
Sbjct: 82 DIRN-KAGMVFQNPDNQIVATIVE---EDVAFGPE----------NLGIPPEEIRERVDE 127
Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
+ G+++ H P LSGG+K+RVA+ +L P+ ++ DEPT
Sbjct: 128 SLKKVGMYEYRR---------HAPH------LLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 185 NHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNV--TNWILEVDRGK 230
LD E + +++ ++Y ++++TH +++ + I+ +D GK
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITH---YMEEAVEADRIIVMDSGK 221
Score = 53.6 bits (129), Expect = 1e-07
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 41/209 (19%)
Query: 317 VIEAKGISKSYND------RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
+I+ K +S Y +L +D+++ ++ G + ++G NG+GK+T+ + + P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 371 SGTIHV-GETVCLS-----------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS 418
G ++V G V Q+ D+ V ED++ G + + + EI
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 419 RAYCSAFNFKGGDQQQRIGS----------LSGGQRGRVHLAKILKSGGNVILLDEPTND 468
R + +++G LSGGQ+ RV +A IL I+ DEPT
Sbjct: 124 RV---------DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
Query: 469 LD----TETLSALEDALENFAGCAVIISH 493
LD E ++ +++ + + ++I+H
Sbjct: 175 LDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 54.5 bits (131), Expect = 7e-08
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT----- 70
+ +L+ + P + +LGP+G+GKST+L +AG G + T
Sbjct: 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG---RIQGNNFTGTILANNRKP 134
Query: 71 -------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
G++ Q+ L TV+E ++ + L + S +E+I +
Sbjct: 135 TKQILKRTGFVTQDDILYPHLTVRETLV-----------FCSLLRLPKSLTKQEKILVAE 183
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
+I GL E + I +SGGE++RV++ +L +P LL+LDEP
Sbjct: 184 SVISELGLTKCENTI----------IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233
Query: 184 TNHLDA 189
T+ LDA
Sbjct: 234 TSGLDA 239
Score = 35.2 bits (81), Expect = 0.046
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 324 SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
++ +R +++ ++ PG I+ V+GP+G+GK+TL L G
Sbjct: 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
Score = 33.7 bits (77), Expect = 0.11
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471
I +SGG+R RV +A + ++++LDEPT+ LD
Sbjct: 204 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 54.3 bits (130), Expect = 8e-08
Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 45/221 (20%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71
LS + + K ++ I++ Y + I+GP+G GKST ++ + I + E + V
Sbjct: 13 LSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL---EGPVKVEGVV 69
Query: 72 GYLPQ---EPQLDLSKTVKE-------------NIIEGVAHKQAILDRYNELMMNYSEKT 115
+ Q +P++++++ ++ +I E VA+ I + + +
Sbjct: 70 DFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL------ 123
Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS--LSGGEKRRVALCKLLLS 173
+EI ++ + LW EV+ D LN ++ LSGG+++R+ + + L
Sbjct: 124 -DEI--VESALKGAALWQ---EVK----------DKLNKSALGLSGGQQQRLCIARALAI 167
Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
P +LL+DEP + LD +E+ + + +VTH+
Sbjct: 168 KPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
Score = 41.5 bits (97), Expect = 5e-04
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 28/203 (13%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
I+ K +S YN I+ +S + + +IGP+G GK+T + L S G + V
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVE 66
Query: 377 ------GETVCLSYVDQSRDSLEA----------EKTVWEDISGGDDIV----KLNGHEI 416
G+ + ++ +R + +++E+++ G I + + EI
Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEI 126
Query: 417 NSRAYCSAF---NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
A A K + +G LSGGQ+ R+ +A+ L V+L+DEP + LD
Sbjct: 127 VESALKGAALWQEVKDKLNKSALG-LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185
Query: 474 LSALEDALENFAG--CAVIISHD 494
+E+ + + I++H+
Sbjct: 186 TMKVEELIHSLRSELTIAIVTHN 208
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 54.0 bits (130), Expect = 9e-08
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 35/213 (16%)
Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
I+ +S +Y +D L++ N++ +P G V ++G G+GK+TL +L G G I +
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 377 -GETV-CLSY---------VDQS----RDSLEAEKTVWEDISGGD-----DIVKLNGHEI 416
G + LS+ V Q D+ A T+ DIS + V+L E+
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLA--EL 458
Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
+R+ G+Q +LS GQ+ + LA++L +++LDE T ++D+ T A
Sbjct: 459 -ARSLPDGLYTPLGEQGN---NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 477 LEDALENFAGCA--VIISHDRMFLDRLATHILA 507
++ AL V+I+H RL+T + A
Sbjct: 515 IQQALAAVREHTTLVVIAH------RLSTIVEA 541
Score = 48.6 bits (116), Expect = 4e-06
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 29/189 (15%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
VL +INLS + ++G G+GKST+ ++ G GE L P
Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI---------RLDGRP 404
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD-LETE 137
LS +V + V +L ++ + +DI + + +W LET
Sbjct: 405 LSSLSHSVLRQGVAMVQQDPVVL----------ADTFLANVTLGRDISEEQ-VWQALET- 452
Query: 138 VQVAIESLHCPADGLNI------TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191
VQ+A E DGL +LS G+K+ +AL ++L+ +P +L+LDE T ++D+ T
Sbjct: 453 VQLA-ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511
Query: 192 IAWMEKYLR 200
+++ L
Sbjct: 512 EQAIQQALA 520
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 53.9 bits (129), Expect = 1e-07
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 23/200 (11%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DESPDSG 372
I+ + ++ Y ++ + N+S ++P + +IGP+G GK+T R L G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 373 TIHV-GETVCLSYVD----QSRDSLEAEK------TVWEDISGGDDIVKLNGHEINS--- 418
+ + GE + VD + + +K +++++++ G I N +++
Sbjct: 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVE 132
Query: 419 RAYCSA--FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476
A SA ++ + SLSGGQ+ R+ +A+ L +IL DEPT+ LD + +
Sbjct: 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 477 LEDALENFAG--CAVIISHD 494
+ED + N VI++H+
Sbjct: 193 IEDLIMNLKKDYTIVIVTHN 212
Score = 50.4 bits (120), Expect = 1e-06
Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 20/204 (9%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI---MAGIDKEYNGEAWLATGFTVG 72
+G K+ L ++++ ++ ++GP+G GKST +R M + K E ++
Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81
Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDR--YNELMMNYSEKTEEEIAKLQDIIDSKG 130
Y P ++L K V + +I D Y + ++K + + +++ + S
Sbjct: 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV--VENALRSAA 139
Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
LWD ET + L PA SLSGG+++R+ + + L P ++L DEPT+ LD
Sbjct: 140 LWD-ETS-----DRLKSPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPI 188
Query: 191 TIAWMEKYLREYSG--AVLMVTHD 212
+ A +E + +++VTH+
Sbjct: 189 STARIEDLIMNLKKDYTIVIVTHN 212
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 53.7 bits (129), Expect = 1e-07
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDR 213
LSGG+KRRVA+ +L P++L+ DEPT LD + M + + + V ++TH
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 214 YFLDNVTNWILEVDRGK----GIPYQ 235
+ V + ++ +D+GK G PY+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYE 262
Score = 49.1 bits (117), Expect = 3e-06
Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 34/193 (17%)
Query: 314 GHVVIEAKGISKSYNDR-----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES 368
+++ K + ++++ + ++N+S+ I +IG +G+GK+TL G
Sbjct: 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77
Query: 369 PDSGTIHVGETVC---------------------------LSYVDQSRDSLEAEKTVWED 401
GTI VG+ +S V Q + + T+ +D
Sbjct: 78 SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137
Query: 402 ISGGDDIVKLNGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459
I G + + E A Y + ++ LSGGQ+ RV +A IL +
Sbjct: 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197
Query: 460 ILLDEPTNDLDTE 472
++ DEPT LD +
Sbjct: 198 LIFDEPTAGLDPK 210
Score = 33.7 bits (77), Expect = 0.14
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 6 IYHMAGLSKVFGSK-----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
I + L VF K L++I+ +F + I+G +G+GKST++ G+ K
Sbjct: 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80
Query: 61 GEAWL 65
G +
Sbjct: 81 GTIQV 85
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 53.3 bits (128), Expect = 1e-07
Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 47/217 (21%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKEYNGEAW-- 64
+G ++ LDD+++ + ++GP+G GKST LR + A ++ E
Sbjct: 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108
Query: 65 -------LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
+A +G + Q+P K++ +N+ G+ + + E+ EE
Sbjct: 109 YDADVDPVALRRRIGMVFQKPN-PFPKSIYDNVAYGL--------KIQGYDGDIDERVEE 159
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
+ + LWD EV+ ++S GL+ LSGG+++R+ + + + P++
Sbjct: 160 SLRR-------AALWD---EVKDQLDS-----SGLD---LSGGQQQRLCIARAIAPDPEV 201
Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
+L+DEP + LD + +E + E + V++VTH+
Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238
Score = 50.6 bits (121), Expect = 9e-07
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 50/217 (23%)
Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DES 368
G VIEA+ ++ Y D +D++S +P + +IGP+G GK+T R + D +
Sbjct: 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAA 95
Query: 369 PDSGTIHV-GETVCLSYVD------------QSRDSLEAEKTVWEDISGG---------- 405
G + G+ V + VD Q + K+++++++ G
Sbjct: 96 RVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF--PKSIYDNVAYGLKIQGYDGDI 153
Query: 406 DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459
D+ V+ L E+ + S + GG QQ R+ +A+ + V
Sbjct: 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ------------RLCIARAIAPDPEV 201
Query: 460 ILLDEPTNDLDTETLSALEDALENFAG--CAVIISHD 494
IL+DEP + LD S +ED +E A VI++H+
Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 53.3 bits (128), Expect = 2e-07
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 17/208 (8%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE- 77
K +L +NL P I+GPNG+GKST+ +AG E + TG TV + ++
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG------REDYEVTGGTVEFKGKDL 67
Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137
+L E I + I N+ + + + Q+ +D +D +
Sbjct: 68 LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY-RGQEPLDR---FDFQDL 123
Query: 138 VQVAIESLHCPADGLNIT---SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---T 191
++ I L P D L + SGGEK+R + ++ + P+L +LDE + LD +
Sbjct: 124 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKI 183
Query: 192 IAWMEKYLREYSGAVLMVTHDRYFLDNV 219
+A LR+ + ++VTH + LD +
Sbjct: 184 VADGVNSLRDGKRSFIIVTHYQRILDYI 211
Score = 35.9 bits (83), Expect = 0.028
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367
++ K + S D+ ++ L+ ++ PG + ++GPNG+GK+TL L G E
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 53.1 bits (127), Expect = 2e-07
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75
+G+ + L I+L F ++GP+G GKST LR + ++ +
Sbjct: 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI---------------- 57
Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI---IDSKGLW 132
+ ++ +K K +++ E+ M + + T + ++ + G+
Sbjct: 58 --ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVK 115
Query: 133 DLETEVQVAIESLHCPA------DGL--NITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184
D E Q ESL A D L N + SGG+++R+ + + L P ++LLDEPT
Sbjct: 116 DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 185 NHLDAETIAWMEKYLRE--YSGAVLMVTHD 212
+ LD + + +E+ L E + +MVTH+
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHN 205
Score = 47.3 bits (112), Expect = 1e-05
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 31/212 (14%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371
+I AK + SY + + +S + +IGP+G GK+T R L D+ + +
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 372 GTIHV-GETVCLSYVDQSRDSLEAEK----------TVWEDISGGDDIVKLNGHEI---- 416
G I G+ + S +D E +V+++++ G I + E+
Sbjct: 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR 123
Query: 417 --NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
S + + + + + SGGQ+ R+ +A+ L V+LLDEPT+ LD +
Sbjct: 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
Query: 475 SALEDALENFAGCAVIISHDRMFLDRLATHIL 506
S +E+ L + H F+ + TH L
Sbjct: 184 SEIEETLME-------LKHQYTFI--MVTHNL 206
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 52.3 bits (125), Expect = 3e-07
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 52/233 (22%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID---------------KEYNGEAW 64
++ D+N + +G +G GKSTIL+++ + K+ N + W
Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458
Query: 65 LATGFTVGYLPQEPQLDLSKTVKENI---IEGVAHKQAILDRYNE--------------- 106
+ +G + Q+P L S ++K NI + + +A+ + YNE
Sbjct: 459 RSK---IGVVSQDPLL-FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSC 514
Query: 107 ---------LMMNYSEKTEE-EIAKLQDIIDSKGLWDLETEVQV-----AIESLHCPADG 151
M N ++ E E+ K I + D+ +V + A+ + G
Sbjct: 515 RAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574
Query: 152 LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG 204
N + LSGG+K+R+++ + ++ +P +L+LDE T+ LD ++ ++K + G
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627
Score = 47.3 bits (112), Expect = 1e-05
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197
SLSGG+K+R+A+ + LL P +LLLDE T+ LD+ + +EK
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399
Score = 38.1 bits (88), Expect = 0.007
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG----CAVIISHD 494
LSGGQ+ R+ +A+ + +++LDE T+ LD ++ ++ + N G +II+H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH- 638
Query: 495 RMFLDRLATHIL 506
R+ R A I
Sbjct: 639 RLSTIRYANTIF 650
Score = 36.9 bits (85), Expect = 0.012
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
SLSGGQ+ R+ +A+ L ++LLDE T+ LD+ + +E +
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401
Score = 30.0 bits (67), Expect = 1.5
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 310 GKRLGHVV-IEAKGISKSYNDRLLID---NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
GK+L + I+ K + Y+ R ++ +L+F L G +G +G GK+T+ +++
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 366 DESPDSGTIHVGET 379
P G I + ++
Sbjct: 434 LYDPTEGDIIINDS 447
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 52.2 bits (126), Expect = 3e-07
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 22/169 (13%)
Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ + + KSY +I + + G + ++GP+G GK+TL RM+ G E SG I +
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 377 GETVCLSYVDQ----SRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
G V V++ RD +L +V E+++ G I + EI R +A
Sbjct: 64 GGRV----VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119
Query: 425 FNFKGG---DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ D++ R LSGGQR RV + + + V L DEP ++LD
Sbjct: 120 RILELEPLLDRKPR--ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Score = 40.2 bits (95), Expect = 0.001
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 9 MAGLS-----KVFGSK-KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62
MAGL K + K +V+ I+L I ++GP+G GKST+LR++AG+++ +GE
Sbjct: 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 63 AWLA 66
W+
Sbjct: 61 IWIG 64
Score = 36.7 bits (86), Expect = 0.013
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWM----EKYLREYSGAVLMVTHD 212
LSGG+++RVA+ + ++ P + L DEP ++LDA+ M ++ R L VTHD
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 52.3 bits (125), Expect = 3e-07
Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 44/241 (18%)
Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69
+ L + + VL +NL F G++G NG GKST+ ++G+ + G
Sbjct: 5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV------ 58
Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAH-----KQAILDRYNELMMNYSEKT----EEEIA 120
L Q LD SK + + VA +Q I + + +S + E EI
Sbjct: 59 ----LWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEIT 114
Query: 121 KLQD----IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
+ D ++D++ H P I LS G+K+RVA+ L+
Sbjct: 115 RRVDEALTLVDAQHF-------------RHQP-----IQCLSHGQKKRVAIAGALVLQAR 156
Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGKGIP 233
LLLDEPT LD M +R V++ +HD + +++ + + +G+ +
Sbjct: 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216
Query: 234 Y 234
+
Sbjct: 217 H 217
Score = 50.0 bits (119), Expect = 1e-06
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386
Y D ++ L+ + G++G NG GK+TLF L+G P G + + + L Y
Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSK 69
Query: 387 QSRDSLEAE-KTVWED----ISGGD---DI------VKLNGHEINSR-----AYCSAFNF 427
+ +L + TV++D I D DI + + EI R A +F
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF 129
Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGC 487
+ Q I LS GQ+ RV +A L +LLDEPT LD + + +
Sbjct: 130 R----HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185
Query: 488 A---VIISHD 494
+I SHD
Sbjct: 186 GNHVIISSHD 195
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 52.1 bits (125), Expect = 4e-07
Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML--TGDESP---- 369
V+ + ++ Y L + N+ +P I IGP+G GK+T+ R D P
Sbjct: 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 370 DSGTIHVGETVCLSYVD----QSRDSLEAE------KTVWEDISGGDDIVKLNGH----- 414
+ G+ + VD + R + + K+++++I+ G ++NG+
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYG---ARINGYKGDMD 125
Query: 415 EINSRAYCSAFNF-KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
E+ R+ A + + D+ ++ G SLSGGQ+ R+ +A+ + VIL+DEP + LD
Sbjct: 126 ELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 473 TLSALEDALENFAG--CAVIISHD 494
+ +E+ + +I++H+
Sbjct: 186 STLRIEELMHELKEQYTIIIVTHN 209
Score = 49.0 bits (117), Expect = 3e-06
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 55/225 (24%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGIDKE----YN 60
L+ +GS + ++ L + +GP+G GKSTILR ++ G E ++
Sbjct: 16 LNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75
Query: 61 GEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE 113
G+ A +G + Q+P K++ +NI G R N + E
Sbjct: 76 GKNLYAPDVDPVEVRRRIGMVFQKPN-PFPKSIYDNIAYGA--------RINGYKGDMDE 126
Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNIT--SLSGGEKRRVALCKLL 171
E + + LWD EV+ D L + SLSGG+++R+ + + +
Sbjct: 127 LVERSLRQ-------AALWD---EVK----------DKLKQSGLSLSGGQQQRLCIARAI 166
Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
P+++L+DEP + LD + +E+ + E Y+ +++VTH+
Sbjct: 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT--IIIVTHN 209
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 52.0 bits (124), Expect = 4e-07
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 45/207 (21%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY------NGEAWLATGF-----T 70
L+ ++ S + I+G NG+GKST R++ G+ +E+ +GE A
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 71 VGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129
+G + Q P + TV++++ G M N EE I ++ + + +
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFG--------------MENQGIPREEMIKRVDEALLAV 128
Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD- 188
+ D +T PA LSGG+K+RVA+ ++ P++++LDE T+ LD
Sbjct: 129 NMLDFKTRE---------PA------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 189 ---AETIAWMEKYLREYSGAVLMVTHD 212
E + + + +Y VL +THD
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHD 200
Score = 48.2 bits (114), Expect = 5e-06
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC---------- 381
++ +SF + G V +IG NG+GK+T R++ G G + + GE +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR-IGSLS 440
+ V Q+ D+ TV +D++ G + + E+ R + D + R LS
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLS 142
Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494
GGQ+ RV +A I+ +I+LDE T+ LD E + + + E + + I+HD
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 51.9 bits (124), Expect = 4e-07
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 48/222 (21%)
Query: 12 LSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGIDKE----Y 59
L K+F G+ + D ++ + G +GP+G GKST+LR ++ G E +
Sbjct: 13 LDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72
Query: 60 NGEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112
G+ G +G + Q+P S ++ +N+ G+ R N +
Sbjct: 73 LGQDVYGKGVDPVVVRRYIGMVFQQPN-PFSMSIFDNVAFGL--------RLNRYKGDLG 123
Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172
++ + + LWD EV+ ++ GL SLSGG+++R+ + + +
Sbjct: 124 DRVKHALQG-------AALWD---EVKDKLK-----VSGL---SLSGGQQQRLCIARAIA 165
Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212
+ P++LLLDEP + LD +E+ + E + +VTH+
Sbjct: 166 TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207
Score = 34.6 bits (79), Expect = 0.062
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
SLSGGQ+ R+ +A+ + + V+LLDEP + LD
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 50.5 bits (120), Expect = 1e-06
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 46/171 (26%)
Query: 342 PGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWED 401
PG ++ ++GP G+GKTTL R L + P G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG----------------------------- 31
Query: 402 ISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVIL 461
++ ++G +I G ++ S SG R R+ LA K +V++
Sbjct: 32 -----GVIYIDGEDILEEVLDQLLLIIVGGKK---ASGSGELRLRLALALARKLKPDVLI 83
Query: 462 LDEPTNDLDTETLSALEDALENFAG---------CAVIISHDRMFLDRLAT 503
LDE T+ LD E + L E ++ ++D L
Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134
Score = 41.2 bits (96), Expect = 8e-04
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192
D E ++ ++ L G S SG + R+AL PD+L+LDE T+ LDAE
Sbjct: 37 DGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQE 96
Query: 193 A---------WMEKYLREYSGAVLMVTHDRYFLD 217
A + E + V++ T+D L
Sbjct: 97 ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Score = 34.3 bits (78), Expect = 0.075
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 31 PDAKIGILGPNGAGKSTILRIMAG 54
P I I+GP G+GK+T+ R +A
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAR 24
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 50.4 bits (120), Expect = 1e-06
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 317 VIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
+I + +S SY D ++N++ + G +G+IG NG+GK+TL L G P G +
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 376 V-GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
V G + V Q+ ++ +TV ED++ G + + L EI R +
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 424 AFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
+ R +LSGGQ V LA IL ++ DE T+ LD ++
Sbjct: 121 LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Score = 49.6 bits (118), Expect = 2e-06
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 48/226 (21%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF------------ 69
L++INL IGI+G NG+GKST+ + G+ + G+ L +G
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQGIR 76
Query: 70 -TVGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
VG + Q P+ + +TV+E++ G + L + EI K D
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPEN----------LCL-----PPIEIRKRVD--- 118
Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
+ L E+ + P +LSGG+ + VAL +L P+ L+ DE T+ L
Sbjct: 119 -RAL----AEIGLEKYRHRSP------KTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167
Query: 188 DAET-IAWME--KYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230
D ++ IA +E K L E ++ +TH+ L + + I+ +DRGK
Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGK 212
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 50.1 bits (120), Expect = 1e-06
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
SGG ++RV + LL P LL+ DEPT LD A+ + + + RE++ A++M+THD
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221
Score = 30.8 bits (70), Expect = 0.91
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494
SGG R RV +A L +++ DEPT LD + ++ L + F ++I+HD
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 50.2 bits (120), Expect = 1e-06
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 17/155 (10%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS--------- 383
I +++ + G ++G G+GK+TL + + P +GT+ V +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 384 ------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY--CSAFNFKGGDQQQR 435
V Q +S E TV +I G K+N E+ + A+ F Q
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+SGGQ ++ + IL ++I+LDEPT LD
Sbjct: 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Score = 47.9 bits (114), Expect = 7e-06
Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 31/218 (14%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78
+ + D+N F I+G G+GKST+++ + + K G
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV------------TVD 67
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL-WDLETE 137
+ ++ K+ I V + ++ ++ E + + + E EI I K +L+
Sbjct: 68 DITITHKTKDKYIRPVRKRIGMVFQFPESQL-FEDTVEREI-----IFGPKNFKMNLDEV 121
Query: 138 VQVAIESLHCPADGLNITSLS-----GGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET- 191
A L ++ S S GG+ R++A+ +L +PD+++LDEPT LD ++
Sbjct: 122 KNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181
Query: 192 ---IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEV 226
+ ++ + + +++V+HD ++ V + EV
Sbjct: 182 RQVMRLLKSLQTDENKTIILVSHD---MNEVARYADEV 216
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 50.1 bits (120), Expect = 1e-06
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81
L D+NL+ + +G G+GKSTI++++ G+ G V
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV------RVD------DTL 70
Query: 82 LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII---DSKGLWDLETEV 138
++ T K I+ + K ++ ++ E S+ EE + L+D+ + G+ E E
Sbjct: 71 ITSTSKNKDIKQIRKKVGLVFQFPE-----SQLFEETV--LKDVAFGPQNFGVSQEEAE- 122
Query: 139 QVAIESLHCP--ADGL---NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA---E 190
+A E L ++ L N LSGG+ RRVA+ +L P +L+LDEPT LD +
Sbjct: 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182
Query: 191 TIAWMEKYLREYSGAVLMVTHDRYFLDNVTN---WILEVDRGK 230
+ + K L + +++VTH +D+V N ++ +++GK
Sbjct: 183 ELMTLFKKLHQSGMTIVLVTH---LMDDVANYADFVYVLEKGK 222
Score = 48.6 bits (116), Expect = 4e-06
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS----------- 383
+++ + G IG G+GK+T+ ++L G P G++ V +T+ S
Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84
Query: 384 ----YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGS- 438
V Q +S E+TV +D++ G ++ E + A G + +
Sbjct: 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAR-EKLALVGISESLFEKNP 143
Query: 439 --LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
LSGGQ RV +A IL +++LDEPT LD
Sbjct: 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 49.8 bits (119), Expect = 2e-06
Identities = 46/176 (26%), Positives = 68/176 (38%), Gaps = 38/176 (21%)
Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD--ESPDSGTIHVGETVC-----L 382
R ++ +LS ++ PG + ++G NGAGK+TL + L GD V V L
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 383 SYVDQSRDSLEAEKTVWEDIS------GGDDIVKLN-----------GHEINSRAYCSAF 425
+ +D R L + V + +IV L H A+ A
Sbjct: 74 AAIDAPR--LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQ-AL 130
Query: 426 NFKGGDQQQR--IGSLSGGQRGRVHLAKIL---------KSGGNVILLDEPTNDLD 470
G + +LSGG+ RV A++L +LLDEPT LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Score = 42.5 bits (100), Expect = 3e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54
+ +L D++L P +LG NGAGKST+L+ +AG
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
Score = 42.1 bits (99), Expect = 3e-04
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 148 PADGLNITSLSGGEKRRVALCKLL---------LSSPDLLLLDEPTNHLDA----ETIAW 194
G ++T+LSGGE RV ++L P LLLDEPT LD +
Sbjct: 137 ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196
Query: 195 MEKYLREYSGAVLMVTHD 212
+ + R+++ VL + HD
Sbjct: 197 VRRLARDWNLGVLAIVHD 214
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 49.5 bits (118), Expect = 2e-06
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375
V++ +S Y + +S + G IV +IG NGAGKTTL L GD SG I
Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 376 V-GETV-----------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423
G+ + ++ V + R + TV E+++ G + + + +
Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVF-SRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
F + QR G++SGG++ + + + L S ++LLDEP+
Sbjct: 123 LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
Score = 40.6 bits (95), Expect = 9e-04
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 46/187 (24%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE--------- 62
+S +G + L +++L + ++G NGAGK+T+L + G + +G
Sbjct: 11 VSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDIT 70
Query: 63 AWLATGF---TVGYLPQEPQLDLSKTVKENIIEG--VAHKQAILDRYNELMMNYSEKTEE 117
W V +P+ ++ TV+EN+ G A + +R + E
Sbjct: 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI--------KWVYE 122
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
+L E +Q A ++SGGE++ +A+ + L+S P L
Sbjct: 123 LFPRLH-----------ERRIQRA-------------GTMSGGEQQMLAIGRALMSQPRL 158
Query: 178 LLLDEPT 184
LLLDEP+
Sbjct: 159 LLLDEPS 165
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 48.7 bits (116), Expect = 4e-06
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++N+SF++P G IVG+IG NG+GK+TL ++ G P+ GT+ +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83
Score = 30.6 bits (69), Expect = 0.99
Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Query: 26 NLSF-YPDAKI-GILGPNGAGKSTILRIMAGI 55
N+SF P+ +I GI+G NG+GKST+ ++AG+
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 48.2 bits (115), Expect = 5e-06
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 56/195 (28%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM------AGIDKEYNG--------EA 63
L+++N + P +GI GP G+GKST+L ++ + D ++ ++
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386
Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGV--AHKQAILDRYNELMMNYSEKTEEEIAK 121
W + V Q P L S TV NI G A +Q I E +A+
Sbjct: 387 WRSRLAVVS---QTPFL-FSDTVANNIALGRPDATQQEI----------------EHVAR 426
Query: 122 LQDIIDS-----KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176
L + D +G +TEV G LSGG+K+R+++ + LL + +
Sbjct: 427 LASVHDDILRLPQG---YDTEV------------GERGVMLSGGQKQRISIARALLLNAE 471
Query: 177 LLLLDEPTNHLDAET 191
+L+LD+ + +D T
Sbjct: 472 ILILDDALSAVDGRT 486
Score = 40.1 bits (94), Expect = 0.002
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 277 RQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNL 336
R S + +RIR+ ++ A G +P G+ G + + + + D ++N+
Sbjct: 282 RGSAAYSRIRA---MLAEAPVVKDG--SEPVPEGR--GELDVNIRQFTYPQTDHPALENV 334
Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRML 363
+F L PG ++G+ GP G+GK+TL ++
Sbjct: 335 NFTLKPGQMLGICGPTGSGKSTLLSLI 361
Score = 28.5 bits (64), Expect = 4.0
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISHDRMF 497
LSGGQ+ R+ +A+ L +++LD+ + +D T + L + G VIIS R+
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511
Query: 498 LDRLATHILAFEGNGHV 514
A+ IL + +GH+
Sbjct: 512 ALTEASEILVMQ-HGHI 527
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 48.1 bits (114), Expect = 6e-06
Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79
K L++ +L+F + ++G G+GKST++++ G+ G+ VG
Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT------IVGDYAIPAN 78
Query: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139
L K VK + + ++ ++ E + + E E++IA + + + +V
Sbjct: 79 LKKIKEVKR-----LRKEIGLVFQFPEYQL-FQETIEKDIA-FGPVNLGENKQEAYKKVP 131
Query: 140 VAIESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIA 193
++ + P D + + LSGG+KRRVAL ++ + L+LDEPT LD + I
Sbjct: 132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN 191
Query: 194 WMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232
E+ +EY ++MVTH+ + + + ++ + GK I
Sbjct: 192 LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230
Score = 43.8 bits (103), Expect = 1e-04
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392
++N S + VIG G+GK+T+ ++ G ++G VG+ + + + ++
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 393 EAEK----------------TVWEDISGGDDIVKLNGHEINSRA--YCSAFNFKGGDQQQ 434
K T+ +DI+ G + N E + ++
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKR 146
Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
LSGGQ+ RV LA I+ GN ++LDEPT LD
Sbjct: 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 47.0 bits (111), Expect = 1e-05
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 50/232 (21%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRM--LTGDESPDS 371
I+ +S Y+ + +++ +S ++ + +IGP+G GK+T L RM L + +
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67
Query: 372 GTIHVGETVCLSYVDQSRDSLEAEK----------TVWEDISGG------------DDIV 409
+ + V+ +R + +V+++++ G DDIV
Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127
Query: 410 KLN------GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463
+ EI + + SA + LSGGQ+ R+ +A+ L V+L+D
Sbjct: 128 ESALKDADLWDEIKHKIHKSALD------------LSGGQQQRLCIARALAVKPKVLLMD 175
Query: 464 EPTNDLDTETLSALEDALENFA----GCAVIISHDRMFLDRLATHILAFEGN 511
EP LD +E +++ VI+SH+ + RL+ F+GN
Sbjct: 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227
Score = 46.2 bits (109), Expect = 2e-05
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 49/198 (24%)
Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----------EYN 60
LS + ++K+L+ +++ Y I+GP+G GKST L+ + +++ E+
Sbjct: 13 LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFF 72
Query: 61 GEAWLATGFTVGYLPQEPQLDLSK------TVKENIIEGVAHKQAILDRYNELMMNYSEK 114
+ + L ++ + K +V +N+ GV ++ + K
Sbjct: 73 NQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK------------IVGWRPK 120
Query: 115 TEEEIAKLQDIIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170
E + DI++S LWD E++ +H A LSGG+++R+ + +
Sbjct: 121 LE-----IDDIVESALKDADLWD---EIK---HKIHKSA-----LDLSGGQQQRLCIARA 164
Query: 171 LLSSPDLLLLDEPTNHLD 188
L P +LL+DEP LD
Sbjct: 165 LAVKPKVLLMDEPCFGLD 182
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 46.7 bits (111), Expect = 2e-05
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 58/232 (25%)
Query: 12 LSKVFGSKKV----LDDINLSFYPDAKIGILGPNGAGKS-TILRIMAGIDK--------- 57
LS FG + +D I+ S +GI+G +G+GKS + L IM ID
Sbjct: 9 LSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL 68
Query: 58 EYNGEAWLA---------TGFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNE 106
E+NG+ G V + Q+P L+ TV I+E + Q
Sbjct: 69 EFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG------- 121
Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNIT--SLSGGEKRR 164
++KT + A ++ QV I PA L++ LSGG +R
Sbjct: 122 ----GNKKTRRQRA-------------IDLLNQVGIPD---PASRLDVYPHQLSGGMSQR 161
Query: 165 VALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
V + + P LL+ DEPT LD A+ I + + ++ + A++++THD
Sbjct: 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Score = 32.4 bits (74), Expect = 0.27
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL------ENFAGCAVIIS 492
LSGG RV +A + +++ DEPT LD + + + L EN A V+I+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMA--LVLIT 211
Query: 493 HDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523
HD + A I+ VE G +
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVE--TGKAHD 240
Score = 28.2 bits (63), Expect = 6.2
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKT 357
+D +S+ + G +VG++G +G+GK+
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKS 47
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 46.3 bits (110), Expect = 2e-05
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 38/209 (18%)
Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD--- 370
++I + ++ SY + N+ +P G + +IGP+G GK+T+ R L D
Sbjct: 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 371 SGTIHVGETVCLSYVDQSRDSLEAE--------------KTVWEDISGGDDIVKLNGH-- 414
G + T D D +E K+++E+I+ G I G
Sbjct: 72 KGRVLFDGT---DLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMD 128
Query: 415 EINSRAYCSAFNF-KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD-- 470
E+ R+ A + + D+ G SLSGGQ+ R+ +A+ + VIL+DEP + LD
Sbjct: 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPI 188
Query: 471 -----TETLSALEDALENFAGCAVIISHD 494
ET+ L+ +NF VI++H+
Sbjct: 189 STLKIEETMHELK---KNFT--IVIVTHN 212
Score = 42.9 bits (101), Expect = 2e-04
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 51/198 (25%)
Query: 37 ILGPNGAGKSTILR------------------IMAGIDKEYNGEAWLATGFTVGYLPQEP 78
++GP+G GKST+LR + G D + +G + Q+P
Sbjct: 44 LIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103
Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV 138
K++ ENI G R N + E E + K +WD
Sbjct: 104 N-PFPKSIYENIAFGA--------RINGYTGDMDELVERSLRK-------AAVWD----- 142
Query: 139 QVAIESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196
C D LN + SLSGG+++R+ + + + P+++L+DEP + LD + +E
Sbjct: 143 -------EC-KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIE 194
Query: 197 KYLREY--SGAVLMVTHD 212
+ + E + +++VTH+
Sbjct: 195 ETMHELKKNFTIVIVTHN 212
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 46.2 bits (110), Expect = 2e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDR 495
LSGGQR R+ +A+ L +++LDE T+ LDTE+ A++ AL+ +++I+H
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH-- 537
Query: 496 MFLDRLAT 503
RL+T
Sbjct: 538 ----RLST 541
Score = 41.9 bits (99), Expect = 5e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191
G N LSGG+++R+A+ + LL +L+LDE T+ LD E+
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Score = 37.7 bits (88), Expect = 0.008
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
IE + ++ +Y + + N++FK+P G V ++G +G+GK+T+ +LT D G I
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 45.6 bits (108), Expect = 3e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 317 VIEAKGISKSYNDRL---------LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367
++E + +SK++ R + LSF L G + +IG NG+GK+TL +ML G
Sbjct: 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 368 SPDSGTI 374
P SG +
Sbjct: 64 EPTSGEL 70
Score = 29.8 bits (67), Expect = 1.7
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGE 62
+ I+G NG+GKST+ +++AG+ + +GE
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGE 69
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 45.7 bits (108), Expect = 3e-05
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 154 ITSLSGGEKR------RVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWMEKY-LREYS 203
I SLSGGEK RVA+ + L + LL++DEPT LD + + + +Y L++ S
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 204 G--AVLMVTHDRYFLDNVTNWILEVDRGKG 231
V+M++H R L +V + EV + G
Sbjct: 859 DIPQVIMISHHRELL-SVADVAYEVKKSSG 887
Score = 36.8 bits (85), Expect = 0.016
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 434 QRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482
+ I SLSGG++ RV +A+ L + +++++DEPT LD + + L+D +E
Sbjct: 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 45.2 bits (107), Expect = 5e-05
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 51/201 (25%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG------IDKEYNGEAWLATGFT--- 70
++L ++ +F P ++G +GAGK+T++ ++AG I+ + +GF
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-----ISGFPKKQ 948
Query: 71 ------VGYLPQ----EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120
GY Q PQ+ TV+E++I Y+ + E ++EE
Sbjct: 949 ETFARISGYCEQNDIHSPQV----TVRESLI------------YSAFLRLPKEVSKEEKM 992
Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGL-NITSLSGGEKRRVALCKLLLSSPDLLL 179
D E V +++L GL +T LS +++R+ + L+++P ++
Sbjct: 993 MFVD----------EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042
Query: 180 LDEPTNHLDAETIAWMEKYLR 200
+DEPT+ LDA A + + +R
Sbjct: 1043 MDEPTSGLDARAAAIVMRTVR 1063
Score = 31.4 bits (71), Expect = 0.69
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 23/203 (11%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG-IDKE--------YNGEAW--LATGF 69
+L D + P +LGP +GK+T+L +AG +D YNG
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY---NELMMNYSEK---TEEEIAKLQ 123
T Y+ Q TVKE + + A Q + RY +EL + E E+
Sbjct: 240 TSAYISQNDVHVGVMTVKETL-DFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFM 298
Query: 124 DIIDSKGL-WDLETEVQVAIESLHCPADGL----NITSLSGGEKRRVALCKLLLSSPDLL 178
+G+ L T+ + I L D + I +SGG+K+RV ++++ L
Sbjct: 299 KATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTL 358
Query: 179 LLDEPTNHLDAETIAWMEKYLRE 201
+DE + LD+ T + K L++
Sbjct: 359 FMDEISTGLDSSTTYQIVKCLQQ 381
Score = 30.2 bits (68), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470
+ LS QR R+ +A L + ++I +DEPT+ LD
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Score = 30.2 bits (68), Expect = 1.5
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 329 DRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
DRL L+ ++ PG + ++G +GAGKTTL +L G
Sbjct: 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Score = 27.9 bits (62), Expect = 7.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
GD+ R +SGGQ+ RV +++ + +DE + LD+ T
Sbjct: 330 GDEMIR--GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 44.7 bits (106), Expect = 6e-05
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 52/211 (24%)
Query: 6 IYHMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTIL-----RIMAGI- 55
I+H L+ KK +L++++ P ++G +GAGK+T+L R+ G+
Sbjct: 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI 818
Query: 56 ---DKEYNGEAWLATGF--TVGYLPQEPQLDL---SKTVKENIIEGVAHKQAILDRYNEL 107
D+ NG L + F ++GY+ Q+ DL + TV+E++ A L + +
Sbjct: 819 TGGDRLVNGRP-LDSSFQRSIGYVQQQ---DLHLPTSTVRESLR-----FSAYLRQPKSV 869
Query: 108 MMNYSEKTE--EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR-R 164
SEK E EE+ KL LE E A + P +GLN+ E+R R
Sbjct: 870 SK--SEKMEYVEEVIKL-----------LEME-SYADAVVGVPGEGLNV------EQRKR 909
Query: 165 VALCKLLLSSPDLLL-LDEPTNHLDAETIAW 194
+ + L++ P LLL LDEPT+ LD++T AW
Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQT-AW 939
Score = 38.2 bits (89), Expect = 0.006
Identities = 59/277 (21%), Positives = 97/277 (35%), Gaps = 66/277 (23%)
Query: 230 KGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYE 289
KG +G + + KR + E S + E ++ S
Sbjct: 694 KGAKQKGEILVFRRGSLKRA--KKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDM 751
Query: 290 ELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVI 349
E H N + + K R++++N+ + PG + ++
Sbjct: 752 EKESGEDIFHWRNLTYEVKIKK----------------EKRVILNNVDGWVKPGTLTALM 795
Query: 350 GPNGAGKTTLFRMLTGDESPDSGTIHVGETVC------------LSYVDQS--------- 388
G +GAGKTTL +L E +G I G+ + + YV Q
Sbjct: 796 GASGAGKTTLLNVLA--ERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853
Query: 389 RDSLE--------AEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLS 440
R+SL + E + ++++KL E +Y A G G L+
Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME----SYADAVVGVPG-----EG-LN 903
Query: 441 GGQRGR----VHLAKILKSGGNVILLDEPTNDLDTET 473
QR R V L K ++ LDEPT+ LD++T
Sbjct: 904 VEQRKRLTIGVELVAKPKL---LLFLDEPTSGLDSQT 937
Score = 35.9 bits (83), Expect = 0.026
Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 41/170 (24%)
Query: 342 PGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWED 401
PG + V+G G+G +TL + + ++ H+G ++Y + + ++
Sbjct: 86 PGELTVVLGRPGSGCSTLLKTIAS----NTDGFHIGVEGVITYDGITPEEIKKHYRGDVV 141
Query: 402 ISGGDDI-------------------VKLNGHEINSRAYCS--------------AFNFK 428
+ D+ + ++ Y N K
Sbjct: 142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201
Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478
G+ R +SGG+R RV +A+ G + D T LD+ T ALE
Sbjct: 202 VGNDFVR--GVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT--ALE 247
Score = 35.5 bits (82), Expect = 0.032
Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 62/185 (33%)
Query: 37 ILGPNGAGKSTILRIMAG----------------------IDKEYNGEAWLATGFTVGYL 74
+LG G+G ST+L+ +A I K Y G+ V Y
Sbjct: 92 VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGD--------VVYN 143
Query: 75 PQE----PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130
+ P L TV E + + A + +R + + + EE AK
Sbjct: 144 AETDVHFPHL----TVGETL-DFAARCKTPQNRPDGV-------SREEYAKH-------- 183
Query: 131 LWDLETEVQVAIESL-HCPADGLN---ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186
+V +A L H + + +SGGE++RV++ + L + D T
Sbjct: 184 ----IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRG 239
Query: 187 LDAET 191
LD+ T
Sbjct: 240 LDSAT 244
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 44.6 bits (106), Expect = 6e-05
Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 41/211 (19%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPP-------GGIVGVIGPNGAGKTTLFRMLTGDESPD 370
+E + ++ +Y D F + P G ++ +IG NG+GK+TL +LTG P
Sbjct: 323 LELRNVTFAYQDN------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376
Query: 371 SGTIHV-GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF-- 427
SG I + G+ V + R A V+ D D ++ G N
Sbjct: 377 SGEILLDGKPVTAEQPEDYRKLFSA---VFTDFHLFDQLLGPEGKPANPALVEKWLERLK 433
Query: 428 ---KGGDQQQRIG--SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD--------TETL 474
K + RI LS GQ+ R+ L L +++LLDE D D L
Sbjct: 434 MAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493
Query: 475 SALEDALENFAGCAVI-ISHDRMFL---DRL 501
L++ G + ISHD + DRL
Sbjct: 494 PLLQE-----MGKTIFAISHDDHYFIHADRL 519
Score = 34.2 bits (79), Expect = 0.098
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 155 TSLSGGEKRRVALCKLLLSSPDLLLLDE 182
LS G+K+R+AL L D+LLLDE
Sbjct: 448 LKLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 44.3 bits (105), Expect = 7e-05
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 153 NITSLSGGEK------RRVALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREY 202
+T LSGGE+ R+AL L + LL+LDEPT LD E + ME+YLR+
Sbjct: 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI 844
Query: 203 SGAVLMVTHD 212
V++V+HD
Sbjct: 845 P-QVIIVSHD 853
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 44.4 bits (105), Expect = 8e-05
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG----C 487
++ G LSGG + RV LA+ +++L+DEP + LD + L+D L
Sbjct: 158 ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKT 217
Query: 488 AVIISHDRMFLD---RLATHILAFEG 510
+ +SHD LD ++ I EG
Sbjct: 218 IIFVSHD---LDEALKIGNRIAIMEG 240
Score = 34.8 bits (80), Expect = 0.056
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
LSGG ++RV L + D+LL+DEP + LD ++ L + + ++ V+HD
Sbjct: 165 LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 44.2 bits (105), Expect = 9e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 314 GHVVIEAKGISKSYN--------DRLL--IDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
+++A + K Y +RL+ +D +SF L G + V+G +G GK+TL R+L
Sbjct: 2 QQPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLL 61
Query: 364 TGDESPDSGTI 374
T E+P G +
Sbjct: 62 TMIETPTGGEL 72
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
SGG+++R+A+ + L+ PD+++ DEP + LD A+ + M +E + + ++HD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214
Score = 38.0 bits (89), Expect = 0.006
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494
SGGQR R+ +A+ L +V++ DEP + LD + L+ + D + V ISHD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 43.5 bits (103), Expect = 1e-04
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212
LSGG +RV + LL P L+ DEPT LD A + K LRE + +L++THD
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Score = 38.1 bits (89), Expect = 0.006
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAVIISHD 494
LSGG RV +A L ++ DEPT DLD L L + + F ++I+HD
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Query: 495 RMFLDRLA 502
+ R+A
Sbjct: 186 LGVVARIA 193
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 42.6 bits (100), Expect = 3e-04
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 28/187 (14%)
Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLEA 394
+ ++ G IV ++G NG GK+TL ++ G P G I + G V D RD
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS- 419
Query: 395 EKTVWEDISGGDDIVKLNGHE----INSRAYCSAFNFKGGDQQQRIG-----SLSGGQRG 445
++ D DD++ + E N++ Y + + G +LS GQ+
Sbjct: 420 --AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 446 RVHLAKILKSGGNVILLDEPTNDLD--------TETLSALEDALENFAGCAVIISHDRMF 497
R+ L ++L DE D D E L L+ + +IISHD +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTI----IIISHDDQY 533
Query: 498 L---DRL 501
D++
Sbjct: 534 FELADQI 540
Score = 41.5 bits (97), Expect = 6e-04
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 47/209 (22%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81
L I+L + I+G NG GKST+ ++ G+ Y+PQE ++
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------------YIPQEGEI- 399
Query: 82 LSKTVKENIIEGVAHKQAILDRYNELMM----------NYSEKTEEEIAKLQDIIDSKGL 131
+++G A D Y +L + E E A L + + L
Sbjct: 400 --------LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNA--QQYL 449
Query: 132 WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA-- 189
LE +V IE T+LS G+++R+AL L +LL DE D
Sbjct: 450 QRLEIADKVKIEDGGFS----TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505
Query: 190 ETIAWMEKY--LREYSGAVLMVTH-DRYF 215
+ + E L+ +++++H D+YF
Sbjct: 506 KRFFYEELLPDLKRQGKTIIIISHDDQYF 534
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 41.7 bits (98), Expect = 5e-04
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+D++S K G ++G++G NG+GK+TL ++ G SP G +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81
Score = 35.2 bits (81), Expect = 0.044
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62
LDDI+L Y IG++G NG+GKST+ I+ G G+
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 40.4 bits (94), Expect = 0.001
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 44/226 (19%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++E G+S L + + S + G I ++G +G+GK+T+ R+L P G + +
Sbjct: 34 ILEKTGLS------LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87
Query: 377 GETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSRAYC 422
D + +K TV ++ + G ++ +N E +A
Sbjct: 88 DGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKAL- 146
Query: 423 SAFNFKGGDQQQRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
D +++G LSGG R RV LA+ L +++L+DE + LD
Sbjct: 147 --------DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198
Query: 473 TLSALEDALENFAG----CAVIISHDRMFLDRLATHILAFEGNGHV 514
+ ++D L V ISHD R+ I A NG V
Sbjct: 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI-AIMQNGEV 243
Score = 40.4 bits (94), Expect = 0.001
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 3 RKFIYHMAGLSKVFGSKKVLDDINLSF-YPDAKIGI--------LGPNGAGKSTILRIMA 53
R F Y GLSK +++L+ LS DA + I +G +G+GKST++R++
Sbjct: 20 RAFKYIEQGLSK----EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN 75
Query: 54 GIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVA--HKQAILDRYNELMMNY 111
+ + G+ L G + + ++ + + + A +LD M
Sbjct: 76 RLIEPTRGQV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134
Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
EE K D + GL + H D LSGG ++RV L + L
Sbjct: 135 GINAEERREKALDALRQVGLENYA----------HSYPD-----ELSGGMRQRVGLARAL 179
Query: 172 LSSPDLLLLDEPTNHLDAETIAWME----KYLREYSGAVLMVTHD 212
+PD+LL+DE + LD M+ K ++ ++ ++HD
Sbjct: 180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 40.1 bits (94), Expect = 0.001
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 58/219 (26%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGFT-------- 70
K +D + L Y +G++G +G GKST R + G+ K +GE AWL
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWR 94
Query: 71 -----VGYLPQEP--QLDLSKTVKENIIEGVA------HKQAILDRYNELMMNYSEKTEE 117
+ + Q+P L+ T+ E I E + +Q + DR +M+
Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMML-------- 146
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
++ L ++I+ P + SGG+ +R+ + + L+ P L
Sbjct: 147 KVGLLPNLINRY------------------PHE------FSGGQCQRIGIARALILEPKL 182
Query: 178 LLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
++ DEP + LD A+ + +++ RE +++ + HD
Sbjct: 183 IICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221
Score = 32.4 bits (74), Expect = 0.30
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
+D ++ +L G +GV+G +G GK+T R + G
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIG 69
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 39.8 bits (93), Expect = 0.002
Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 73/235 (31%)
Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT--------- 67
G K +D ++++ G++G +G+GKS I + + G+ K+ W T
Sbjct: 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD----NWRVTADRMRFDDI 73
Query: 68 --------------GFTVGYLPQEPQ--LDLSKTVKENIIE---GVAHKQAILDRYNELM 108
G V + QEPQ LD S+ V +++ G +K R+
Sbjct: 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFG--- 130
Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPA--DGLNITS-----LSGGE 161
W AIE LH D + L+ GE
Sbjct: 131 -----------------------WRKRR----AIELLHRVGIKDHKDAMRSFPYELTEGE 163
Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212
++V + L + P LL+ DEPTN ++ T A + + L + + +L+++HD
Sbjct: 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 38.5 bits (90), Expect = 0.004
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212
+SGG +R+ + LL ++ DEPT LD A + +E +++ + +L+VTHD
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Score = 37.0 bits (86), Expect = 0.012
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494
+SGG R+ +A L I+ DEPT DLD L LE ++ A ++++HD
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Query: 495 RMFLDRLATHILAFEGNGHVE 515
+ RLA + VE
Sbjct: 201 MGVVARLADDVAVMSHGRIVE 221
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 38.3 bits (89), Expect = 0.005
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 29/189 (15%)
Query: 154 ITSLSGGEKRRVALCKLLLS--SPDLLLLDEPTNHL---DAETIAWMEKYLREYSGAVLM 208
+ +LSGGE+ R AL K L + +LDEP+ L D + + K LR+ VL+
Sbjct: 474 LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533
Query: 209 VTHDRYFLDNVTNWILEVDRGKGI-----PYQGNYSAYLQMKAKRMAQENREEISRQKAI 263
V HD + ++ + I+++ G GI + G+ +L A+ R+E++
Sbjct: 534 VEHDEQMI-SLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQELTIPIPE 592
Query: 264 ERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGI 323
+R + SKA + ++L I +P+G+ + G
Sbjct: 593 KRTN------SLGTLTLSKATKHNLKDLT------------ISLPLGRLTVVTGVSGSGK 634
Query: 324 SKSYNDRLL 332
S ND L+
Sbjct: 635 SSLINDTLV 643
Score = 37.5 bits (87), Expect = 0.009
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 151 GLNITSLSGGEKRRVAL-CKLLLSS--PDLLLLDEPTNHLDAETIAWMEKYLRE--YSG- 204
G ++SLSGGE +R+ L +LL S P L +LDEPT L I + L+ + G
Sbjct: 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863
Query: 205 AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYL 242
V+++ H+ + + V +++LE+ P GN YL
Sbjct: 864 TVVIIEHNMHVV-KVADYVLELG-----PEGGNLGGYL 895
Score = 37.1 bits (86), Expect = 0.012
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 151 GLNITSLSGGEKRRVALCKLLL---SSPDLLLLDEPTNHLDAETIAWMEKYLREY--SG- 204
G N++SLS EK + + K L P L LLDE LD + + + LR G
Sbjct: 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGH 1753
Query: 205 AVLMVTHDRYFLDNVTNWILEVDRGKG 231
+V+ + HD L I E+ G G
Sbjct: 1754 SVIYIDHDPALLKQADYLI-EMGPGSG 1779
Score = 33.3 bits (76), Expect = 0.17
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 438 SLSGGQRGRVHLAKILKSGG---NVILLDEPTNDLDTETLSALEDALENFA--GCAVIIS 492
SLSGG+ R+ LA L + + +LDEPT L T + AL L++ G V+I
Sbjct: 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII 868
Query: 493 HDRMFLDRLATHIL 506
M + ++A ++L
Sbjct: 869 EHNMHVVKVADYVL 882
Score = 32.9 bits (75), Expect = 0.25
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 436 IGSLSGGQRGRVHLAKILKS--GGNVILLDEPTNDL---DTETLSALEDALENFAGCAVI 490
+ +LSGG++ R LAK L + G +LDEP+ L DT L + L + ++
Sbjct: 474 LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533
Query: 491 ISHD-RM--FLDRL 501
+ HD +M DR+
Sbjct: 534 VEHDEQMISLADRI 547
Score = 31.7 bits (72), Expect = 0.53
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSG-GNVI-LLDEPTNDL---DTETLSAL 477
G +Q +LS G+ R+HLAK + S ++I LL++P + L D TL L
Sbjct: 1382 GQEQD---TLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQL 1431
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle.
Length = 1179
Score = 37.3 bits (87), Expect = 0.009
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357
+E G KS+ D I+ F GI G++GPNG GK+
Sbjct: 5 LELAGF-KSFADPTTIN---F---DKGITGIVGPNGCGKS 37
Score = 29.3 bits (66), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49
++ G K D ++F GI+GPNG GKS I+
Sbjct: 6 ELAGFKSFADPTTINF-DKGITGIVGPNGCGKSNIV 40
Score = 27.3 bits (61), Expect = 9.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 153 NITSLSGGEKRRVALCKLLLS------SPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV 206
N++ LSGGEK AL LL + +P +LDE LD + L+E+S
Sbjct: 1086 NLSLLSGGEKALTAL-ALLFAIFKVKPAP-FCILDEVDAPLDDANVERFANLLKEFSKNT 1143
Query: 207 --LMVTHDR 213
+++TH++
Sbjct: 1144 QFIVITHNK 1152
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 36.5 bits (85), Expect = 0.015
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 151 GLNITSLSGGEKRRVALCKLLL---SSPDLLLLDEPTNHLDAETIA 193
G T+LSGGE +R+ L K L + L +LDEPT L + I
Sbjct: 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 868
Score = 35.8 bits (83), Expect = 0.031
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 435 RIGSLSGGQRGRVHLAKILKSG--GNVILLDEPTNDL---DTETLSALEDALENFAGCAV 489
G+LSGG+ R+ LA + SG G + +LDEP+ L D E L L + +
Sbjct: 484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVI 543
Query: 490 IISHDRMFLDRLATHIL-----AFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSG 538
++ HD + R A +++ A G V G EE + S + + LSG
Sbjct: 544 VVEHDEETI-RAADYVIDIGPGAGIHGGEVV-ASGTPEEILANPDSLTGQYLSG 595
Score = 34.2 bits (79), Expect = 0.084
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 59/215 (27%)
Query: 154 ITSLSGGEKRRVALCKLLLS--SPDLLLLDEPT-------NHLDAETIAWMEKYLREYSG 204
+LSGGE +R+ L + S + L +LDEP+ N T+ K LR+
Sbjct: 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTL----KRLRDLGN 540
Query: 205 AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIE 264
V++V HD + +++ +D G P G + + +A EEI
Sbjct: 541 TVIVVEHDEETI-RAADYV--IDIG---PGAGIHGGEV------VASGTPEEI------- 581
Query: 265 RERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGIS 324
A + S ++ +E R PGN + + G +
Sbjct: 582 ----------LANPDSLTGQYLSGKKKIEVPKERRPGNGKFLTLKG-------------A 618
Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359
+ N + N++ +P G + G +G+GK+TL
Sbjct: 619 RENN----LKNITVSIPLGLFTCITGVSGSGKSTL 649
Score = 34.2 bits (79), Expect = 0.095
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 438 SLSGGQRGRVHLAKIL--KSGGNVI-LLDEPTNDLDTETLSALEDALENFAG---CAVII 491
+LSGG+ R+ LAK L +S G + +LDEPT L + + L + L+ V+I
Sbjct: 828 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887
Query: 492 SH 493
H
Sbjct: 888 EH 889
Score = 28.1 bits (63), Expect = 6.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTI 48
L +I++ D + I G +G+GKS++
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 34.7 bits (79), Expect = 0.061
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 331 LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
+++D F + +G++ G+GKTTL R+L G ++PD G
Sbjct: 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42
Score = 31.2 bits (70), Expect = 0.63
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62
VLD + IGIL G+GK+T+ R++ G+D G+
Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University).
Length = 1311
Score = 33.9 bits (77), Expect = 0.11
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 428 KGGDQQQRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481
KG G S GQ+ R+ LA+ +I LDEPT +LD E + +L AL
Sbjct: 1189 KGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHAL 1248
Query: 482 ----------ENFAGCAVIISHDRMFLDRL 501
NF ++I+HD F++ L
Sbjct: 1249 VEIIKSRSQQRNFQ--LLVITHDEDFVELL 1276
Score = 31.6 bits (71), Expect = 0.50
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL--------REYSGAVLMVTHDRYF 215
R+AL + + ++ LDEPT +LD E I + L ++ + +L++THD F
Sbjct: 1213 RLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272
Query: 216 LDNVT 220
++ +
Sbjct: 1273 VELLG 1277
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 32.6 bits (75), Expect = 0.24
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 346 VGVIGPNGAGKTTLF-RML-TGDESPDSGTIHVGETVCLSYVDQSRD 390
+G++ AGKTTL R+L + G + G TV ++ Q ++
Sbjct: 11 IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVT-DWMPQEQE 56
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 32.7 bits (74), Expect = 0.25
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 8/36 (22%)
Query: 331 LLIDNLSFKLP--------PGGIVGVIGPNGAGKTT 358
L++ LS +LP GG++ ++GP GAGKTT
Sbjct: 330 LMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTT 365
>gnl|CDD|180056 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 32.4 bits (75), Expect = 0.31
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 9/39 (23%)
Query: 24 DINLSFYPDAKIGIL-GPNGAGKSTILR------IMAGI 55
D +L + ++ ++ GPN AGKST +R ++A I
Sbjct: 600 DCDLD--EERRLLLITGPNMAGKSTYMRQVALIVLLAQI 636
>gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 32.4 bits (74), Expect = 0.31
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 346 VGVIGPNGAGKTTLFRMLTG 365
+G+IG +GKTTLF LTG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTG 25
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 31.5 bits (71), Expect = 0.51
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 341 PPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWE 400
G I + G GAGKTTL +T E + + S A + E
Sbjct: 24 ALGPIFLICGKTGAGKTTLLDAITYALYGKLPRR--SEVIRSLNSLYAAPSEAAFAEL-E 80
Query: 401 DISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK 451
G K+ R + + +Q +++ RGR+ AK
Sbjct: 81 FSLGT----KIYR---VHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAK 124
Score = 27.6 bits (61), Expect = 7.4
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 431 DQQQR-IGSLSGGQRGRVH------LAKILKSGGNVIL----LDEPTNDLDTETLSALED 479
R +LSGG+ LA +L + G +L +DE LD ++L
Sbjct: 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG 1001
Query: 480 ALE--NFAGCAV-IISHDRMFLDRLATHIL 506
L+ + IISH F +R+ IL
Sbjct: 1002 ILDAIREGSKMIGIISHVPEFRERIPHRIL 1031
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 31.7 bits (72), Expect = 0.57
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 341 PPGGIVGVIGPNGAGKTTL 359
P G+ V+G N AGKT L
Sbjct: 21 FPPGVTAVVGENAAGKTNL 39
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 31.2 bits (72), Expect = 0.63
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 439 LSGGQRGRVHLAKIL--KSGGNVI-LLDEPT 466
LSGG+ RV LAK L +S G + +LDEPT
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861
Score = 31.2 bits (72), Expect = 0.71
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 151 GLNITSLSGGEKRRVALCKLLLSSPD---LLLLDEPT 184
G T+LSGGE +RV L K L L +LDEPT
Sbjct: 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861
>gnl|CDD|130430 TIGR01363, strep_his_triad, streptococcal histidine triad protein.
This model represents the N-terminal half of a family of
Streptococcal proteins that contain a signal peptide and
then up to five repeats of a region that includes a
His-X-X-His-X-His (histidine triad) motif. Three repeats
are found in the seed alignment. Members of this family
from Streptococcus pneumoniae are suggested to cleave
human C3, and the member PhpA has been shown in vaccine
studies to be a protective antigen in mice.
Length = 348
Score = 31.1 bits (70), Expect = 0.68
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKAR 284
E+ G I G Y YL+ A +EEI+RQK E ++ S + + ++AR
Sbjct: 120 EIKGGYVIKVNGKYYVYLKDAAHADNIRTKEEIARQKQ-EGSKEAKEKSKREDAAVAEAR 178
>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 31.3 bits (72), Expect = 0.76
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 349 IGPNGAGKTTLF-RML--TGDESPDSGTIHVGETVCLSYVDQSRDSLEAEK 396
+G +GAGKTTL +L TG G + G T D + E+
Sbjct: 1 VGHSGAGKTTLTEAILFYTG-AIHRIGEVEDGTTTM--------DFMPEER 42
>gnl|CDD|179652 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 401
Score = 31.1 bits (71), Expect = 0.81
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 513 HVEWFEGNFEEYEKDKLS 530
H+ W G+FE Y K KL
Sbjct: 165 HLSW-HGSFENYVKAKLK 181
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 30.9 bits (70), Expect = 0.89
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 438 SLSGGQRGRVHLAKIL--------KSGGNVILLDEPTNDLDTETLSALEDALE--NFAGC 487
+LSGG+ V LA L K+ + + LDE LD+ETL DAL+ N +G
Sbjct: 949 TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGK 1008
Query: 488 AV-IISHDRMFLDRLATHILAFEGNG 512
+ +ISH +R+ I + NG
Sbjct: 1009 TIGVISHVEAMKERIPVQIKVKKING 1034
Score = 27.5 bits (61), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 344 GIVGVIGPNGAGKTTL 359
G+ + GP GAGKTTL
Sbjct: 31 GLFAITGPTGAGKTTL 46
>gnl|CDD|132639 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family,
HK022 subfamily. Members of this family are phage (or
prophage-region) homologs of the bacterial homohexameric
replicative helicase DnaB. Some phage may rely on host
DnaB, while others encode their own verions. This model
describes the largest phage-specific clade among the
close homologs of DnaB, but there are, or course, other
DnaB homologs from phage that fall outside the scope of
this model.
Length = 421
Score = 30.8 bits (70), Expect = 0.96
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 230 KGIPYQGNYSAYL-QMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSY 288
P N S+Y ++ K R+ I+ + I + S + ++ K +
Sbjct: 82 NNTPSAANISSYARIVREKAKE---RKLIAACQRIID----LACSDGGQTAEQK--VEEA 132
Query: 289 EELVESAAHRHPGNAQIIIPVGKRLGHVVIEAK----------GISKSYNDRLLIDNLSF 338
+ + + G + + G+ L VV + G+S +D L+
Sbjct: 133 QAALLALTGMSDGQERGFVTFGEVLEDVVRDLDKRFNPKGELTGLSTGLPK---LDRLTN 189
Query: 339 KLPPGGIVGVIGPNGAGKTTL 359
L G ++ + GKTTL
Sbjct: 190 GLVKGDLIVIGARPSMGKTTL 210
>gnl|CDD|180329 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 30.6 bits (70), Expect = 0.97
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 436 IGSLSGGQRGRVH------LAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--C 487
IG++S G RG +H L + + P + + TL ALE LE AG
Sbjct: 149 IGTMSVGDRGGMHALYTPLLFE-------QVTAPFPPDGYEQATLDALEALLEKHAGEIA 201
Query: 488 AVII 491
A I+
Sbjct: 202 AFIV 205
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 30.7 bits (70), Expect = 0.98
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 330 RLLIDNLSFK------LPPGGIVGVIGPNGAGKTT 358
L L K L GG++ ++GP G GKTT
Sbjct: 175 EALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTT 209
>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 30.7 bits (70), Expect = 1.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
Query: 28 SFYPDA-----KIGIL-GPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYL 74
S Y +I IL G G GKST+++ + GE +L G+ V +L
Sbjct: 20 SLYDSIIDGANRIFILKGGPGTGKSTLMKKI--------GEEFLEKGYDVEFL 64
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model
recognizes a large number of small GTP-binding proteins
and related domains in larger proteins. Note that the
alpha chains of heterotrimeric G proteins are larger
proteins in which the NKXD motif is separated from the
GxxxxGK[ST] motif (P-loop) by a long insert and are not
easily detected by this model.
Length = 161
Score = 30.8 bits (70), Expect = 1.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS 388
+ ++G GK+TL L G++ +YV
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKFITE----YKPGTTRNYVTTV 42
>gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This
family describes GspE, the E protein of the type II
secretion system, also called the main terminal branch
of the general secretion pathway. This model separates
GspE from the PilB protein of type IV pilin
biosynthesis.
Length = 486
Score = 30.4 bits (69), Expect = 1.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 342 PGGIVGVIGPNGAGK-TTLFRMLTGDESPDSGTIHV 376
P GI+ V GP G+GK TTL+ L+ +P+ + V
Sbjct: 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV 276
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 30.3 bits (69), Expect = 1.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374
+D L+ L G V ++G +G GK+TL L G+E +G +
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226
>gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 30.2 bits (69), Expect = 1.4
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 37 ILGPNGAGKSTILR------IMAGI 55
I GPN GKST LR IMA I
Sbjct: 4 ITGPNMGGKSTYLRQVGLIVIMAQI 28
>gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 29.9 bits (68), Expect = 1.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 37 ILGPNGAGKSTILRIMA 53
++GP GAGKS +L +MA
Sbjct: 446 VVGPTGAGKSVLLALMA 462
>gnl|CDD|184924 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 30.0 bits (67), Expect = 1.8
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139
LD+S + + I H+ A+L EL + YSE+ +I +L +I ++ DL+ Q
Sbjct: 275 LDVSLVLDQLI--STLHELALLQYLPELGLKYSEEINAKILQLSKLISAQ---DLQLYYQ 329
Query: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKL-LLS----SPDLLLLDEPT 184
+A + G + L+ +++ +C L LL+ +P+ +L+ EP
Sbjct: 330 IACK-------GRSDLQLAVTQEQGFEMCVLRLLAFRPLAPNEILVSEPV 372
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance
of chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. It is
found in a single copy and is homodimeric in
prokaryotes, but six paralogs (excluded from this
family) are found in eukarotes, where SMC proteins are
heterodimeric. This family represents the SMC protein
of archaea and a few bacteria (Aquifex, Synechocystis,
etc); the SMC of other bacteria is described by
TIGR02168. The N- and C-terminal domains of this
protein are well conserved, but the central hinge
region is skewed in composition and highly divergent.
Length = 1164
Score = 29.7 bits (67), Expect = 1.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49
K FG KKV+ F I GPNG+GKS I
Sbjct: 11 KSFGKKKVI-----PFSKGF-TVISGPNGSGKSNIG 40
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.9 bits (68), Expect = 1.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 340 LPPGGIVGVIGPNGAGKTT 358
L GG+V ++GP G GKTT
Sbjct: 218 LKQGGVVALVGPTGVGKTT 236
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 29.9 bits (68), Expect = 2.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 35 IGILGPNGAGKSTILRIMA 53
I I GP GAGKST+ R +A
Sbjct: 287 IAIDGPAGAGKSTVTRAVA 305
Score = 28.3 bits (64), Expect = 5.6
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 332 LIDN--LSFKLPPGGIVGVIGPNGAGKTTLFR 361
LIDN L + P I+ + GP GAGK+T+ R
Sbjct: 274 LIDNVFLMKRQP---IIAIDGPAGAGKSTVTR 302
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 29.8 bits (67), Expect = 2.1
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG-----FTVGYLPQ----EPQLDLSKT 85
+ I GP G GKS++ R +A +Y G A+L TG L Q + +L +
Sbjct: 4 VAIDGPAGVGKSSVSRALA----QYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQV 59
Query: 86 VKENIIE 92
V E + E
Sbjct: 60 VTEAVGE 66
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 29.3 bits (66), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 35 IGILGPNGAGKSTILRIMA 53
I I GP+GAGKST+ + +A
Sbjct: 5 IAIDGPSGAGKSTVAKAVA 23
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme ethanolamine
ammonia lyase. The function of this gene is unknown,
although the presence of an N-terminal GxxGxGK motif
implies a GTP-binding site.
Length = 142
Score = 29.3 bits (66), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 348 VIGPNGAGKTTLFRMLTGDE 367
IG G GKTTL + L G+E
Sbjct: 5 FIGSVGCGKTTLTQALQGEE 24
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 29.3 bits (67), Expect = 2.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 35 IGILGPNGAGKSTILRIMA 53
I I GP G+GK T+ +I+A
Sbjct: 7 IAIDGPAGSGKGTVAKILA 25
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 29.2 bits (66), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 345 IVGVIGPNGAGKTTLFRMLT 364
++GV G +G GKTT R L
Sbjct: 10 LLGVAGDSGCGKTTFLRGLA 29
Score = 28.1 bits (63), Expect = 6.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 35 IGILGPNGAGKSTILR 50
+G+ G +G GK+T LR
Sbjct: 11 LGVAGDSGCGKTTFLR 26
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 29.2 bits (66), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 336 LSFKLPPGGIVG---VIGPNGAGKTTLFRML 363
+F + ++G + GP G+GKTTL L
Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLNFL 454
>gnl|CDD|181981 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 29.3 bits (67), Expect = 2.8
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 344 GIVGVIGPNGAGKTTLFRMLTG 365
GIVG+ PN GK+TLF LT
Sbjct: 6 GIVGL--PN-VGKSTLFNALTK 24
>gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 28.8 bits (65), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 346 VGVIGPNGAGKTTLFRMLTGD 366
+ +IG GAGK+TL RML
Sbjct: 136 IALIGLRGAGKSTLGRMLAAR 156
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 28.7 bits (65), Expect = 3.6
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 345 IVGVIGPNGAGKTTL 359
IVG+ GP GAGK+TL
Sbjct: 35 IVGIAGPPGAGKSTL 49
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 28.8 bits (65), Expect = 3.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 348 VIGPNGAGKTTLFR 361
VIGP G+GKTTL +
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 28.8 bits (65), Expect = 3.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 25 INLSFYPDAKIGILGPNGAGKSTIL 49
I + K I G NGAGKST+L
Sbjct: 20 IEIQLDKVKKTLITGKNGAGKSTML 44
>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 28.9 bits (65), Expect = 3.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 350 GPNGAGKTTLFRML 363
GP G GKTTL R++
Sbjct: 59 GPPGVGKTTLARII 72
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 28.8 bits (65), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 343 GGIVGVIGPNGAGKTT 358
GG+ ++GP G GKTT
Sbjct: 256 GGVFALMGPTGVGKTT 271
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 28.6 bits (64), Expect = 4.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 345 IVGVIGPNGAGKTTLFRMLTGDES 368
V + G +G+GKTTL L
Sbjct: 17 TVLIDGRSGSGKTTLAGALAARTG 40
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 28.7 bits (64), Expect = 4.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 37 ILGPNGAGKSTILRIMAGIDKEYNG 61
I GP G+GKST+L ++A + Y G
Sbjct: 461 IFGPTGSGKSTLLALIAAQFRRYAG 485
>gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 28.4 bits (64), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 34 KIGILGPNGAGKSTILRIMAGID 56
+IGI +G GKST+L ++A D
Sbjct: 167 RIGIFAGSGVGKSTLLAMLARAD 189
>gnl|CDD|131611 TIGR02560, HrpB4, type III secretion protein HrpB4. This family of
genes are always found in type III secretion operons in
a limited number of species including Burkholderia,
Xanthomonas and Ralstonia.
Length = 210
Score = 28.3 bits (63), Expect = 4.5
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHDRYFLDNV 219
RV L S P L L E N L A + + LR + DR L +
Sbjct: 53 RVIQAWLGWSGPSLSALLERANRLAVLPPALLLRVLRMRALFSRRTAVRRCIDRARLSRL 112
Query: 220 TNWI 223
W+
Sbjct: 113 EAWV 116
>gnl|CDD|148992 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 28.5 bits (64), Expect = 4.9
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
+++ L+ +L+ PG ++G+ G G+GKT+ +L + H+
Sbjct: 2 GKYAENLAKLLVEPSLA----PGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHI 53
>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
Length = 469
Score = 28.5 bits (64), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 39 GPNGAGKSTILRIMAGIDKEY 59
G G GKS L ++AGI +Y
Sbjct: 212 GGGGNGKSVFLNVLAGILGDY 232
>gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below.
Length = 207
Score = 28.5 bits (64), Expect = 4.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 341 PPGGIVGVIGPNGAGKTTLFRML 363
P G I+G+ G +G+GKTT+ R +
Sbjct: 4 PKGIIIGIGGGSGSGKTTVARKI 26
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 28.2 bits (64), Expect = 5.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 341 PPGGIVGVIGPNGAGKTTL 359
G+ ++G NG GKT L
Sbjct: 21 LSPGVNVLVGENGQGKTNL 39
>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 28.2 bits (63), Expect = 5.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 343 GGIVGVIGPNGAGKTT 358
GG++ ++GP G GKTT
Sbjct: 185 GGVLALVGPTGVGKTT 200
>gnl|CDD|115150 pfam06474, MLTD_N, MLTD_N.
Length = 93
Score = 28.1 bits (63), Expect = 5.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 248 RMAQENREEISRQKAIERERDWIVSSPKA 276
R+ Q + I ++ +RDW + +P
Sbjct: 63 RIRQGFQLGIPDNPRVDYQRDWYLKNPSF 91
>gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 28.3 bits (64), Expect = 5.8
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 26/118 (22%)
Query: 34 KIGILGPNGAGKSTIL---RIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENI 90
K+ +LG +GKSTIL RI+ G GF+ QE + + + NI
Sbjct: 23 KLLLLGAGESGKSTILKQMRILHG------------DGFS-----QEERREYRPLIYSNI 65
Query: 91 IEGVAHKQAILDRYNELMMNYS-EKTEEEIAKLQDIIDSKGLWD--LETEVQVAIESL 145
+E + +A++D EL + + ++ +I + + + + L E+ AI++L
Sbjct: 66 LESM---KALVDAMEELNIPFEDPESILDIRIITEQFNKTDETENVLPKEIAKAIKAL 120
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 28.0 bits (62), Expect = 5.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 346 VGVIGPNGAGKTTLFRMLTGDES 368
+ +G GAGKTTLF L G+ +
Sbjct: 4 IAFVGAVGAGKTTLFNALQGNYT 26
>gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 28.2 bits (63), Expect = 5.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 341 PPGGIVGVIGPNGAGKTTLFRMLT 364
P ++G+ P G GKTTL L
Sbjct: 98 IPPLVIGISAPQGCGKTTLVFALV 121
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in E.
coli shows considerable homology to guanylate kinases
(EC 2.7.4.8), and has actually been shown to act as a
ribose 1,5-bisphosphokinase (PRPP forming). This
suggests an analogous kinase reaction for phosphonate
metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 28.1 bits (63), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 343 GGIVGVIGPNGAGKTTL 359
G ++ V+GP+GAGK TL
Sbjct: 1 GRLIYVVGPSGAGKDTL 17
>gnl|CDD|163162 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like).
Length = 351
Score = 27.8 bits (63), Expect = 6.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 345 IVGVIGPNGAGKTTLFRMLTGDE 367
V ++G AGK+TLF LTG +
Sbjct: 191 TVALVGYTNAGKSTLFNALTGAD 213
>gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1 and Miro-2), are atypical Rho GTPases. They have
a unique domain organisation, with tandem GTP-binding
domains and two EF hand domains (pfam00036), that may
bind calcium. They are also larger than classical small
GTPases. It has been proposed that they are involved in
mitochondrial homeostasis and apoptosis.
Length = 118
Score = 27.8 bits (62), Expect = 6.7
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 346 VGVIGPNGAGKTTLFRMLTGDESPD---SGTIHVGETVCLSYVDQSRDSLE 393
V VIG G+GK++L L G E P V VD + L
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLH 52
>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. There are two conserved sequence
motifs: GKT and YLP.
Length = 1192
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 340 LPPGGIVGVIGPNGAGKTTLFRML 363
L G + G N AGKTTL R++
Sbjct: 14 LDLDGHTNICGTNAAGKTTLQRLI 37
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 28.0 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 340 LPPGGIVGVIGPNGAGKTT 358
+ GG+ +IGP G GKTT
Sbjct: 188 IEQGGVYALIGPTGVGKTT 206
>gnl|CDD|148770 pfam07350, DUF1479, Protein of unknown function (DUF1479). This
family consists of several hypothetical Enterobacterial
proteins, of around 420 residues in length. Members of
this family are often known as YbiU. The function of
this family is unknown.
Length = 408
Score = 27.6 bits (62), Expect = 7.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 352 NGAGKTTLFRMLTG-----DESPDSGTIHV 376
NG G ++FR G D P GT+ V
Sbjct: 226 NGPGACSMFRTFQGWLALSDTGPGEGTLRV 255
>gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 27.8 bits (62), Expect = 7.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 35 IGILGPNGAGKSTILRIMA 53
I ++GP GAGKSTI R +A
Sbjct: 7 IFLVGPMGAGKSTIGRQLA 25
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 27.6 bits (62), Expect = 7.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 348 VIGPNGAGKTTLFRMLTGDE 367
+IG +G GKTTL + L G+E
Sbjct: 6 LIGRSGCGKTTLTQALNGEE 25
>gnl|CDD|184339 PRK13807, PRK13807, maltose phosphorylase; Provisional.
Length = 756
Score = 27.9 bits (63), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 101 LDRYNELMMNYSEK---TEEEIAKLQDIID 127
L+ +++ + TEEE+AK QDI+D
Sbjct: 508 LENLDKVKKEAPARLNVTEEELAKWQDIVD 537
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 27.6 bits (61), Expect = 7.6
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 34 KIG----ILGPNGAGKSTILRIMA 53
KIG GP G GK+TI RI+A
Sbjct: 38 KIGHAYIFFGPRGVGKTTIARILA 61
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 27.9 bits (62), Expect = 7.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 345 IVGVIGPNGAGKT 357
+VGV GP+GAGKT
Sbjct: 67 LVGVAGPSGAGKT 79
>gnl|CDD|163364 TIGR03631, bact_S13, 30S ribosomal protein S13. This model
describes bacterial ribosomal protein S13, to the
exclusion of the homologous archaeal S13P and eukaryotic
ribosomal protein S18. This model identifies some (but
not all) instances of chloroplast and mitochondrial S13,
which is of bacterial type.
Length = 113
Score = 27.5 bits (62), Expect = 8.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 112 SEKTEEEIAKLQDIIDSK----GLWDLETEVQVAIESL 145
+ TEEE+ +++ I++K G DL EV + I+ L
Sbjct: 44 KDLTEEELNAIREEIEAKYKVEG--DLRREVSLNIKRL 79
>gnl|CDD|179955 PRK05179, rpsM, 30S ribosomal protein S13; Validated.
Length = 122
Score = 27.4 bits (62), Expect = 8.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 115 TEEEIAKLQDIIDSK----GLWDLETEVQVAIESL 145
T+EE+ K+++ ID G DL EV + I+ L
Sbjct: 49 TDEELDKIREEIDKNYKVEG--DLRREVSMNIKRL 81
>gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 27.4 bits (62), Expect = 9.1
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 3/14 (21%)
Query: 345 IVGVIGPNGAGKTT 358
+VGV NG GKTT
Sbjct: 119 VVGV---NGVGKTT 129
>gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA. This model describes
orthologs of the recA protein. RecA promotes
hybridization of homolgous regions of DNA. A segment of
ssDNA can be hybridized to another ssDNA region, or to a
dsDNA region. ATP is hydrolyzed in the process. Part of
the SOS respones, it is regulated by LexA via
autocatalytic cleavage.
Length = 321
Score = 27.3 bits (61), Expect = 9.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 340 LPPGGIVGVIGPNGAGKTTL 359
LP G I+ + GP +GKTTL
Sbjct: 52 LPRGRIIEIYGPESSGKTTL 71
>gnl|CDD|172354 PRK13826, PRK13826, Dtr system oriT relaxase; Provisional.
Length = 1102
Score = 27.4 bits (61), Expect = 9.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 342 PGGIVGVIGPNGAGKTTLFR 361
P I V+G GAGKTT+ +
Sbjct: 396 PARIAAVVGRAGAGKTTMMK 415
>gnl|CDD|179671 PRK03906, PRK03906, mannonate dehydratase; Provisional.
Length = 385
Score = 27.5 bits (62), Expect = 9.9
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145
EEI + I++ G LE V +ES+
Sbjct: 41 PVEEILARKAEIEAAG---LEWSV---VESV 65
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.135 0.391
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,998,246
Number of extensions: 606862
Number of successful extensions: 2941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 872
Length of query: 539
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 441
Effective length of database: 3,876,889
Effective search space: 1709708049
Effective search space used: 1709708049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)