BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780273|ref|YP_003064686.1| putative ABC transporter
ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
(539 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/539 (100%), Positives = 539/539 (100%)
Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN
Sbjct: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60
Query: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120
GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA
Sbjct: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120
Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL
Sbjct: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180
Query: 181 DEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA 240
DEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA
Sbjct: 181 DEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA 240
Query: 241 YLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHP 300
YLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHP
Sbjct: 241 YLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHP 300
Query: 301 GNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360
GNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF
Sbjct: 301 GNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360
Query: 361 RMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420
RMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA
Sbjct: 361 RMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420
Query: 421 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480
YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA
Sbjct: 421 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480
Query: 481 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA 539
LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA
Sbjct: 481 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA 539
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 261 bits (668), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/513 (31%), Positives = 262/513 (51%), Gaps = 53/513 (10%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
I + +S G +L D+ LS P +I ++G NG+GKST+L+I AGI + +G +L
Sbjct: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
Query: 66 ATGFTVGYLPQEPQLDLSKTVKENI-------IEGVAHKQAILDRYNELMMNYSEKTEEE 118
+ +GYL Q P L T+ + I IE ++L ++N
Sbjct: 65 HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN------------- 111
Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
+ QD I +LS G+ R VAL K+L+S PD+L
Sbjct: 112 -LREQD----------------------------RIENLSVGQTRCVALMKMLISRPDIL 142
Query: 179 LLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238
+LDEPTNHLD TI WME+ L + + A++ V+HDR FL+ ++ + +DRG +
Sbjct: 143 ILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGF 202
Query: 239 SAYLQMKAKRMAQENREEISRQKAIERERDWI---VSSPKARQSKSKARIRSYEELVESA 295
+ + K + QE + +K E E++W+ V++ + R + + ++ ++
Sbjct: 203 AYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQ 262
Query: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAG 355
Q + + G +V+EA I+K Y+DRL++ + S ++ G +G++GPNGAG
Sbjct: 263 KKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAG 322
Query: 356 KTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGD-DIVKLNGH 414
KTTL ++LTG PD G I +G + ++ +DQ R+ ++ +K++ ++G D + + G
Sbjct: 323 KTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGE 382
Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474
+ Y F F + LSGG++ R +A++L N +++DEPTNDLD ETL
Sbjct: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
Query: 475 SALEDALENFAGCAVIISHDRMFLDRLATHILA 507
LE + G +I+SHDR FLDR T +A
Sbjct: 443 DFLERTITQLQGTILIVSHDRDFLDRTVTSTIA 475
Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 19/224 (8%)
Query: 312 RLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371
RL H+ GI L+ ++ + P + ++G NG+GK+TL ++ G P S
Sbjct: 7 RLDHISATIGGID-------LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
Query: 372 GTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC--SAFNFKG 429
G + + + L Y++Q+ D L T+ + I DD +K + E Y FN +
Sbjct: 60 GNVFLHSSSRLGYLEQNPD-LSHFSTISQYI---DDTIK-DTIEAPYSPYSLLKKFNLR- 113
Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAV 489
+Q RI +LS GQ V L K+L S ++++LDEPTN LD T+ +E L +
Sbjct: 114 --EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALI 171
Query: 490 IISHDRMFLDRLATHILAFEGNG--HVEWFEGNFEEYEKDKLSR 531
+SHDR FL+ L+T + + H++ FE ++K+ L +
Sbjct: 172 FVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQ 215
Score = 77.0 bits (188), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 35/250 (14%)
Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63
K + ++K + + V+ D +L + IGI+GPNGAGK+T+L+++ G K G
Sbjct: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123
L T + + Q+ +E+I + + + +M E + ++
Sbjct: 342 TLGTNLKIATIDQK---------REDIDPDKSLASYLTGSSGDSLMVRGE-SRHVAGYIK 391
Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP-DLLLLDE 182
D L P ++ G ++ A+ +L+ P + L++DE
Sbjct: 392 DF-------------------LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDE 432
Query: 183 PTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLD-NVTNWI----LEVDRGKGIPYQGN 237
PTN LD ET+ ++E+ + + G +L+V+HDR FLD VT+ I +E G I Y G
Sbjct: 433 PTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGG 492
Query: 238 YSAYLQMKAK 247
YS L + K
Sbjct: 493 YSDMLVQQKK 502
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 79.7 bits (195), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 40/221 (18%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79
K+L DIN + P+ + ++GPNG+GKSTI +++ GI K G VGY+PQ
Sbjct: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ--- 80
Query: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139
K EN + L R+ L M + +++ ++ D ++ G ++
Sbjct: 81 ----KVTIENTLP------LSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYNR----- 122
Query: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWME 196
NI LSGGE +R L K LL P+LL+LDEP +D ++ +
Sbjct: 123 -------------NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
Query: 197 KYLREYSGA-VLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236
+R+ +G +L+++H+ + + T+ ++ ++ I YQG
Sbjct: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLN--NRICYQG 208
Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS--- 388
++ +++F + P IV +IGPNG+GK+T+ +++TG P G++ + + YV Q
Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
Query: 389 RDSLEAEKTVWEDI---SGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRG 445
++L + + S DD++++ N G + I LSGG+
Sbjct: 85 ENTLPLSLMRFMTLSMPSSRDDVLQI----------LDRVNLI-GKYNRNIKDLSGGEFQ 133
Query: 446 RVHLAKILKSGGNVILLDEPTNDLDTE---TLSALEDALENFAGCAV-IISHD 494
R LAK L N+++LDEP +D +L L ++ GC + +ISH+
Sbjct: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 73.2 bits (178), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
++ A ++K YN ++ + + PG IVG++GPNGAGKTT F M+TG DSG+I +
Sbjct: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
Query: 377 -GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
G + +SY+ Q S+ TV E+I ++ + + + + +
Sbjct: 85 DGNDITKMPMYRRARLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
Query: 425 FNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
F + + LSGGQR R+ +A+ L S + ILLDEP +D +S + + +
Sbjct: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
Query: 484 FA--GCAVIIS 492
A G ++I+
Sbjct: 204 LASRGIGILIT 214
Score = 65.5 bits (158), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 50/235 (21%)
Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------- 62
L+K + S V+ ++L P +G+LGPNGAGK+T +M G+ +G
Sbjct: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
Query: 63 -----AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
+ + YLPQE + TV+ENI+ A+L+ Y E+
Sbjct: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENIL-------AVLEVY-----------EK 130
Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
+ K + +DS L E + + H A LSGG++RR+ + + L+S P
Sbjct: 131 DKKKRHEKLDS-----LLKEFNIT-KWRHVLA-----PLLSGGQRRRLEIARSLVSFPSY 179
Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRG 229
+LLDEP +D I+ + +R+ + +L+ H NV + +DR
Sbjct: 180 ILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH------NVHEILTLIDRA 228
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 62/218 (28%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT---------- 70
VL++++LS + ++ P+G GKSTIL I ++ G +A
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
Query: 71 -----VGYLPQEPQLDLSKTVKENII-----EGVAHKQAILDRYNELM--MNYSEKTEEE 118
+G++ QE +L + +V ENII G+ HK A Y M ++Y + ++
Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA----YQRAMDLLSYMDMSQYA 140
Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178
+ DI SGGE++RVA+C+ + + P ++
Sbjct: 141 NRRSSDI--------------------------------SGGEQQRVAICRAIANKPLII 168
Query: 179 LLDEPTNHLD---AETIAWMEKYLREYSG-AVLMVTHD 212
L DEPT +LD A+ + + KYL SG A L+ TH+
Sbjct: 169 LADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206
Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDS 391
+++N+ L G IV ++ P+G GK+T+ + E PD G + + +C D +
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
Query: 392 LEAEK--------------TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ--QQR 435
L K +V E+I I +N RA ++ Q +R
Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM-DLLSYMDMSQYANRR 143
Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
+SGG++ RV + + + + +IL DEPT +LD +T
Sbjct: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 27/177 (15%)
Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
+E K IS +Y N +++++ +P I +IG NGAGK+TLF+ + G D G+I +
Sbjct: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
Query: 377 -GETV-------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE-INSRAYCSAFNF 427
+TV ++Y+ Q+ E W +D+V + ++ +N R S ++
Sbjct: 72 FNQTVENALKADLIAYIPQT------ESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
Query: 428 K-----------GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
+ +Q++IG LS GQ+ RV LA+ L VI++DEP +D +T
Sbjct: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 40/205 (19%)
Query: 22 LDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--------VG 72
L+D+NL F P+ I ++G NGAGKST+ + + G+ G + +
Sbjct: 28 LEDVNL-FIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
Y+PQ +D + + ++E V ++ RY MN+ + S +
Sbjct: 87 YIPQTESIDWTFPI---LVEDV----VMMGRYKH--MNWRR------------VASNNDY 125
Query: 133 DLETEV--QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
+ TE V + S+ G LS G+++RV L + L ++++DEP +D +
Sbjct: 126 RIVTEALENVGMSSMRQRQIG----ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
Query: 191 T---IAWMEKYLREYSGAVLMVTHD 212
T + ++ K L +L+ TH+
Sbjct: 182 TEREMIFLLKSLLNEDIMILVSTHN 206
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 63.5 bits (153), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 56/233 (24%)
Query: 6 IYHMAG--LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE----- 58
IY M +S +G K+ L DINL ++ ++GP+G GKST LR + +++
Sbjct: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63
Query: 59 YNGEAWL-------------ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAI 100
+ GE L VG + Q P K++ +N+ I G+ + +A
Sbjct: 64 FTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKAD 122
Query: 101 LDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGG 160
+D+ E+ + + E +L H + + LSGG
Sbjct: 123 IDQIVEMSLKKASLFNEVKDRL----------------------FH------DASLLSGG 154
Query: 161 EKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTH 211
+++RV + + L +P+++L+DEP + LD A +E+ + E S +++VTH
Sbjct: 155 QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTH 207
Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDSGTIHV- 376
+S Y ++ + +++ K+P + +IGP+G GK+T R L T D +G I +
Sbjct: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
Query: 377 GETVCLSYVDQSRDSLEAE------------KTVWEDISGGDDIVKLNGHEIN------- 417
G+ + S VD R L A K+++++++ G I L ++ +
Sbjct: 72 GKNIYQSSVDVVR--LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
Query: 418 SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477
S S FN LSGGQ+ RV +A+ L VIL+DEP + LD +++
Sbjct: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
Query: 478 EDALENF--AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKL 529
E+ + + VI++H R++ F GH+ EE + DK+
Sbjct: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHL------VEEDDTDKM 236
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 62/243 (25%)
Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
I L K+ G+ VLD +N + +G+LG +G+GKST+LRI+AG+ +G+
Sbjct: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
Query: 66 ATGFTVGYLPQEPQLDLSK-----------TVKENIIEGVAHKQAILDRYNELMMNYSEK 114
G ++P D+S TV EN+ G+ K ++ E+
Sbjct: 77 K-----GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG----------IDKEER 121
Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
+ ++ + D+I G ES H T +SGG +RV + +
Sbjct: 122 RKRALSAI-DLIGLDGF-----------ESAHT-------TEISGGMLQRVGFARAFVVF 162
Query: 175 PDLLLLDEPTNHLDAETI---------AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILE 225
P LLL+DEP + LD T W+E L S +LMVTH N+ +L
Sbjct: 163 PSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTH------NIEEAVLM 214
Query: 226 VDR 228
DR
Sbjct: 215 CDR 217
Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 317 VIEAKGISKSYN------DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
++E + I +S++ + L++D ++F + G IVG++G +G+GK+TL R++ G SP
Sbjct: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
Query: 371 SGTIHV-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
SG + G+ + +S V Q+ +L TV E++ G ++ E RA SA
Sbjct: 71 SGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-LSA 128
Query: 425 FNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
+ G G + +SGG RV A+ +++L+DEP + LD T
Sbjct: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 46/223 (20%)
Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAW-------LATG-----FT--VGYLPQEPQL 80
+G++G +G GKS ++R + G+ +GE LA G F+ +G L Q L
Sbjct: 42 LGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGAL 101
Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140
S TV+ENI S +E + D+I+ ++
Sbjct: 102 FSSMTVQENI---------------------SMPIKEHLNLPADLIEHI------VHTKI 134
Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD---AETIAWMEK 197
AI L L LSGG +RV+L + L PDLL LDEPT+ LD AE +
Sbjct: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
Query: 198 YLREYSG-AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYS 239
LR G +V M+THD L + N + + + KGI +G S
Sbjct: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQK-KGIMKEGTIS 236
Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQS------------R 389
G I+GVIG +G GK+ L R + G SG + V GE + L+ Q+
Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98
Query: 390 DSLEAEKTVWEDISG--------GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSG 441
+L + TV E+IS D+++ H ++++ + + LSG
Sbjct: 99 GALFSSMTVQENISMPIKEHLNLPADLIE---HIVHTKIAIVGLPPETANLMPF--QLSG 153
Query: 442 GQRGRVHLAKILKSGGNVILLDEPTNDLD---TETLSALEDALENFAGCAV-IISHD 494
G RV LA+ L +++ LDEPT+ LD E L L + G +V +I+HD
Sbjct: 154 GMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 42/192 (21%)
Query: 34 KIGILGPNGAGKSTILRIMAGIDKEYNGEAWL---------ATGFTVGYLPQEPQLDLSK 84
+I ILGP+GAGKST+L +MAG G +L + + L QE L
Sbjct: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86
Query: 85 TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIES 144
TV +NI G+A LD Y A+++ +++ L D
Sbjct: 87 TVWQNIALGIA-PNLRLDHYQH-------------AQVKQMLEKVFLEDFFNRFP----- 127
Query: 145 LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIAWMEKYLR 200
+ +SGG+++RVAL + L+ +LLLDEP D E + +++
Sbjct: 128 ----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCD 177
Query: 201 EYSGAVLMVTHD 212
E +LM++H+
Sbjct: 178 ERQLTLLMISHN 189
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG---------ETVCLSYVDQSRDSLEAEK 396
+ ++GP+GAGK+TL ++ G + P G+I + LS + Q ++L +
Sbjct: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE-NNLFSHL 86
Query: 397 TVWEDISGG-------DDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHL 449
TVW++I+ G D ++ + + F + Q +SGGQR RV L
Sbjct: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ------MSGGQRQRVAL 140
Query: 450 AKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAVIISHDRMFLDRLATHI 505
A+ L ++LLDEP D E L L+ + ++ISH+ ++AT
Sbjct: 141 ARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRF 200
Query: 506 LAFEG 510
+ G
Sbjct: 201 IVIAG 205
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 56.6 bits (135), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 308 PVGKRLGHVVIEAKGI--SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
P+ RL + I AK I RL+ NLSF +P G + GP+G GK+ + G
Sbjct: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380
Query: 366 DESPDSGTIHVGE-----------TVCLSYVDQ-----------------SRDSLEAEKT 397
+ + GTI G+ + + Y+ Q ++SL +
Sbjct: 381 LLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQK 440
Query: 398 VWEDISGGDDIVKL-NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456
+ + +DI+ L NG++ YCS + ++ L++I+ +
Sbjct: 441 TAKIVGCHEDILSLKNGYQ---TTYCS-------------DEIPYNIVQKIRLSRIIANN 484
Query: 457 GNVILLDEPTNDLDTETLSALEDALENF---AGCAVIISHD 494
++L+DEP LD E + L+ F VIISHD
Sbjct: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
Score = 40.8 bits (94), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 15 VFGSKKVLDDI--NLSF-YPDAKIGIL-GPNGAGKSTILRIMAGI-----------DKEY 59
VF KK I NLSF P+ I+ GP+G GKS L M G+ D++
Sbjct: 337 VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI 396
Query: 60 NGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
+ + +GYL Q L ++ ENII ++H Q N L + ++KT + +
Sbjct: 397 SRDFIEKFSAQIGYLSQHCSL-FPISITENII--LSHDQ------NSLHI--AQKTAKIV 445
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179
+DI+ K + ++ +C + + +++ L +++ ++P +LL
Sbjct: 446 GCHEDILSLKNGY----------QTTYCSDE------IPYNIVQKIRLSRIIANNPAILL 489
Query: 180 LDEPTNHLDAET---IAWMEKYLREYSGAVLMVTHD 212
+DEP HLD E + K +E +++++HD
Sbjct: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC----------LS 383
NL FK G + ++GP+G+GK+T+ +L P SG+I + G + +S
Sbjct: 373 NLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430
Query: 384 YVDQSRDSLEAEKTVWEDISGG------DDIVKL----NGHEINSRAYCSAFNFKGGDQQ 433
YV Q D TV +I G ++++++ N H+ + ++ G+
Sbjct: 431 YVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF-IMSLPQGYDTYVGENG 487
Query: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-GCAVIIS 492
+LSGGQ+ R+ +A+ + G++++LDE T+ LDT T + + AL G I+
Sbjct: 488 ---SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI 544
Query: 493 HDRMFLDRLATHILAFE 509
R+ A HI+ E
Sbjct: 545 AHRISTIIEADHIIFIE 561
Score = 51.6 bits (122), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 46/195 (23%)
Query: 15 VFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYNGEAW 64
VF S K VL INL F ++GP+G+GKSTI+ ++ + E +G
Sbjct: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417
Query: 65 LATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119
F+ + Y+ Q+ L S TV+ NI+ G TEEE+
Sbjct: 418 RDITFSSLRERISYVGQDVFL-FSNTVRYNILIG-----------------RPMATEEEM 459
Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPAD---GLNITSLSGGEKRRVALCKLLLSSPD 176
+I S D I SL D G N ++LSGG+K+R+A+ + +L
Sbjct: 460 I---EIAKSANAHDF-------IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509
Query: 177 LLLLDEPTNHLDAET 191
+L+LDE T+ LD T
Sbjct: 510 ILVLDEATSALDTHT 524
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 48/244 (19%)
Query: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64
F + L+K +G+ L DINL+ ++ I GP+G+GKST++R + I+K GE
Sbjct: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74
Query: 65 LATGFT--------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR-YNELMM 109
+ G VG + Q L + +V EN G + + + EL M
Sbjct: 75 IINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
Query: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169
+Y K V++A +S + + LSGGE +R A+ +
Sbjct: 135 HYLNK-----------------------VKIADKSHR------SSSLLSGGESQRAAIAR 165
Query: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEV 226
L P ++L DEPT+ LD E + + + E + ++ VTH+ F V + ++ +
Sbjct: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM 225
Query: 227 DRGK 230
D+G+
Sbjct: 226 DQGQ 229
Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 29/240 (12%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
+E K ++K Y + + +++ + G V + GP+G+GK+TL R + E +G I +
Sbjct: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
Query: 378 ETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIV-KLNGHEINSRAY 421
+ D R+ E + +V E+ + G V K+ + A
Sbjct: 78 G---IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
Query: 422 CSAFNFKGGDQQQRIGSLSGGQRG-RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480
K D+ R SL G R +A+ L ++L DEPT+ LD E + + D
Sbjct: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
Query: 481 LENFAG---CAVIISHDRMFLDRLATHILAF------EGNGHVEWFEGNFEEYEKDKLSR 531
+ A V ++H+ F ++A ++ E N E+F E + LS+
Sbjct: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQ 254
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 50.8 bits (120), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 27/248 (10%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79
+++ +NL P + I+GPNG+GKST+ +++G K+Y T G + + +
Sbjct: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYE--------ITAGDILYKGE 67
Query: 80 LDLSKTVKENIIEG--------VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID-SKG 130
L ++ E +G V I+ ++ ++ +N K E L I D ++
Sbjct: 68 SILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRK 125
Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
+ + E+ + ++ L P LN+ SGGEK+ + ++ L P L +LDE + LD +
Sbjct: 126 VRKITAELGINMDMLKRP---LNL-GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
Query: 191 TI---AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK 247
+ A LR + L++TH + L+ + + V I G+YS L ++
Sbjct: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
Query: 248 RMAQENRE 255
A+ +E
Sbjct: 242 GYAELIKE 249
Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
D +I L+ K+ P +V ++GPNG+GK+TL +L+G
Sbjct: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 45.8 bits (107), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 33/202 (16%)
Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG------------------- 377
+ ++ G I+ ++G +GAGK+TL R + G G + V
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
Query: 378 --ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAFNF-KGGDQ 432
TV + + + +L +TV ++ G + + + E SR + N K D
Sbjct: 109 RMHTVSMVF---QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165
Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCA 488
+I LSGG + RV A+ +G ++L+DEP + LD L+D L
Sbjct: 166 --KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
Query: 489 VIISHDRMFLDRLATHILAFEG 510
V +SHD RL I EG
Sbjct: 224 VFVSHDINEAFRLGNRIAIMEG 245
Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 36/191 (18%)
Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLAT--GFTVGYLPQEPQLDLSKTVKENIIEGV 94
++G +GAGKST+LR + G+ GE + T GF P ++ + ++ + + V
Sbjct: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN---PYAADANVLRKLRMHTVSMV 116
Query: 95 AHKQAILD-----RYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVA----IESL 145
+ A+L R EL + + + + D+E + +VA I +L
Sbjct: 117 FQQFALLPWRTVARNVELGLEFLD-----------------IPDVERKSRVAEHLEIVNL 159
Query: 146 HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----RE 201
AD I LSGG K+RV + + +LL+DEP + LD ++ L R+
Sbjct: 160 TKWAD-CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
Query: 202 YSGAVLMVTHD 212
++ V+HD
Sbjct: 219 LKKTIVFVSHD 229
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
+ I+ P K ++G +G GKST+ +++ + Y+ + G + + Q
Sbjct: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLY---RLYDIKG--------GIITIDGQ- 419
Query: 81 DLSKTVKENIIE--GVAHKQAILD----RYNELMMNYSEKTEE-----EIAKLQDIIDSK 129
D+ K KE++ + G+ + IL RYN L N + +E E+A+L+ I
Sbjct: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI--- 476
Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
+ + + + G LSGGEK+RV++ + +L +P +++ DE T+ LD
Sbjct: 477 ----------MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
Query: 190 ET 191
T
Sbjct: 527 IT 528
Score = 43.5 bits (101), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)
Query: 314 GHVVIEAKGISKSYNDR-LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
GH+V +S SYN + +SF++ P +IG +G GK+T+ ++L G
Sbjct: 355 GHIVFN--NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
Query: 373 TIHV-GETVCLSYVDQSRDSL-EAEKTVWEDISGGDDIVKLNGHEINSRA----YCSA-- 424
I + G+ + +++SL + + +D +D ++ N N A C+A
Sbjct: 413 IITIDGQDIK----KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVE 468
Query: 425 ------FNFK---GGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
F K G D +R LSGG++ RV +A+ + +I+ DE T+ LD T
Sbjct: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
Query: 474 LSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVE 515
++ AL + ++I+H R+ A +I+ F+ VE
Sbjct: 529 ERHIQTALATLSKNRTTLVIAH-RLSTITDADNIIVFDQGTVVE 571
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 44.3 bits (103), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVD 386
+ R ++ N++F + PG + ++G +GAGKT++F ++ P SG++ + G + L ++
Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
Query: 387 QSR--------DSLEAEKTVWEDISGGDDIVKLNGHEI-NSRAYCSAFNFKG-------- 429
+ R + +V+++I+ G EI N+ A F G
Sbjct: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGYDT 418
Query: 430 --GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472
GD LS GQ R+ +A+ + ++LLDE + LD E
Sbjct: 419 ILGDGAVH---LSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460
Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 36/194 (18%)
Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-----------T 67
+ +L ++N + P I ++G +GAGK++I ++ +G +
Sbjct: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362
Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127
+ ++PQ P + ++ +V +NI G H T +EI
Sbjct: 363 RRFIAWVPQHPIM-IAASVYDNIAIGCPHA-----------------TRKEI-------Q 397
Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187
+ + E +E+ + G LS G+ +R+A+ + +L +LLLDE + L
Sbjct: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457
Query: 188 DAETIAWMEKYLRE 201
D E + K LRE
Sbjct: 458 DIENEQKIWKVLRE 471
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENFA--GCA 488
Q +LSGG+ RV LAK L +G + +LDEPT L ++ L + L G +
Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
Query: 489 VIISHDRMFLDRLATHILAF 508
+I+ + + + A IL F
Sbjct: 901 IIVIEHNLEVIKTADWILDF 920
Score = 34.3 bits (77), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 151 GLNITSLSGGEKRRVALCKLL---LSSPDLLLLDEPTNHLDAETIAWMEKYLR---EYSG 204
G + +LSGGE +RV L K L + L +LDEPT L IA + L +
Sbjct: 840 GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN 899
Query: 205 AVLMVTHDRYFLDNVTNWILE 225
+++++ H+ + +WIL+
Sbjct: 900 SIIVIEHNLEVI-KTADWILD 919
Score = 23.9 bits (50), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTL 359
+ N+S +LP ++ + G +G+GK++L
Sbjct: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISG 404
++ V+G NG GKTT+ L+ S G V L+ D R + + +W D +
Sbjct: 113 VILVVGVNGVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
Query: 405 GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456
D + EI S A A+ Q +++ L GR+H IL +G
Sbjct: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 511
Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMM 109
Q PQ D+ + NIIE +++ D Y L+M
Sbjct: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 340 LPPGGIVGVIGPNGAGKTTL 359
P G IV + GP +GKTTL
Sbjct: 64 FPKGRIVEIYGPESSGKTTL 83
>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 293
Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS----LSGGEKRRVA 166
+SE + + +QD++DS W V++ ES + P D + S +G E ++V
Sbjct: 167 FSEVNPKAVQMMQDVVDSSYHW----FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222
Query: 167 LCKLL 171
L ++
Sbjct: 223 LIDVV 227
>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 367
Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDES------------PDSGTIHVGETVC--LSYVDQS 388
G G+IG GK+TLF LT S P+SG + V + L+ + +S
Sbjct: 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAES 61
Query: 389 RDSLEAEKTVWEDISG 404
+D L + + DI+G
Sbjct: 62 KD-LVPTRMSFVDIAG 76
>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 354
Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDE----PTNDLDTETLSALED---ALENF 484
+++ IG + GGQ R+ + G ++LD P N + + ++A D AL F
Sbjct: 2 KKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTF 61
Query: 485 A 485
A
Sbjct: 62 A 62
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 331 LLIDNLSFKLPPGGI---VGVIGPNGAGKTTLFRMLTGD 366
L D FK G I V ++GP G GKT L R + G+
Sbjct: 166 FLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 222
Score = 24.6 bits (52), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96
I P+G GKSTI R + D+ + + T + + N ++G +
Sbjct: 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTT----------------RVRRPNEVDGKDY 63
Query: 97 KQAILDRYNEL 107
L R+NEL
Sbjct: 64 YFLSLSRFNEL 74
>gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 281
Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGD 406
+ +C S +DSL K +W+ +SGG+
Sbjct: 82 QDLCFSI----KDSLRISKMIWQLVSGGN 106
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 24.6 bits (52), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 345 IVGVIGPNGAGKTTLFRMLTGDESP 369
I+G+ G G GKTT+ L ++ P
Sbjct: 3 IIGLTGSIGTGKTTVAEFLKKEKIP 27
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRML 363
+L +L P I+ ++GP G GKT + R L
Sbjct: 46 DLRDELMPKNIL-LVGPTGVGKTAISRRL 73
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 21 VLDDINLSFYPDAKIGIL----GPNGAGKSTILR 50
+ +D +LS D G L GPN GKST LR
Sbjct: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKST-ILRIMAGIDKEYNGEAWLA 66
KV+D I+ + KIG+ G G GK+ I+ ++ + K + G + A
Sbjct: 138 KVIDLIS-PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 23.5 bits (49), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 34 KIGILGPNGAGKSTILRIMAGID 56
+IG+ +G GKST+L + A D
Sbjct: 163 RIGVFAGSGIGKSTLLSMFARSD 185
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,460
Number of Sequences: 1233
Number of extensions: 15710
Number of successful extensions: 143
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 78
length of query: 539
length of database: 328,796
effective HSP length: 78
effective length of query: 461
effective length of database: 232,622
effective search space: 107238742
effective search space used: 107238742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 41 (20.4 bits)