HHsearch alignment for GI: 254780274 and conserved domain: PRK05077
>PRK05077 frsA fermentation/respiration switch protein; Reviewed.
Probab=99.14 E-value=2.9e-08 Score=73.89 Aligned_cols=233 Identities=14% Similarity=0.133 Sum_probs=134.5
Q ss_pred CCCEEEEEEEEECCCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8937899999734889996799998868789-888999999999869899995860208855367876665563999999
Q gi|254780274|r 10 DETIHKSVHSYNQTHKTPRAIILACQSIEEN-IEDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVC 88 (317)
Q Consensus 10 ~~~~~~~~~~~~~~~~~p~~~vl~~HG~~~~-~~~~~~~~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~~~~~~ 88 (317)
T Consensus 178 G~~i~gfLHL--P~~~~p~PtViv~GgLDsLQ~D~~rLF~dylaP~giAMLTlDMPSvG~Ss~w~Lt---qDsS-----~ 247 (414)
T PRK05077 178 GKPITGFLHL--PKGDGPFPTVLMCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLT---QDSS-----L 247 (414)
T ss_pred CCEEEEEEEC--CCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC---CHHH-----H
T ss_conf 9657899846--9999988759995672477888999999852646733797037877653635444---3067-----9
Q ss_pred HHHHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999999999985--599559999338722899999996832321320227777754410156688877775305632102
Q gi|254780274|r 89 DVMKLRTLISEK--HGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPS 166 (317)
Q Consensus 89 d~~~~~~~~~~~--~~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (317)
T Consensus 248 LHQaVL~~L~~vPWVDh~Rv~~~GfRFG~NvAvRLayLEp~rlKavv~lG~~VH~~~~---------~~~~~~---~~P~ 315 (414)
T PRK05077 248 LHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHALLS---------DPDRQQ---QVPE 315 (414)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCEEEEEEECHHHHHHHC---------CHHHHH---HCCH
T ss_conf 9999998556898632303567764202069999986262001268872628888836---------888887---6878
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 34333111110011100123344574468888764211578978999999999850002333103568847999726888
Q gi|254780274|r 167 RLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLIGGGNVS 246 (317)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlli~G~~D~ 246 (317)
T Consensus 316 MylDvlASR--------------------------Lg~~~~~~~~L~~~l--~~~SLK~QGlLgRr~~vPmLa~~~k~Dp 367 (414)
T PRK05077 316 MYLDVLASR--------------------------LGMHDASDEALRVEL--NRYSLKVQGLLGRRCPTPMLSGYWKNDP 367 (414)
T ss_pred HHHHHHHHH--------------------------HCCCCCCHHHHHHHH--HHCCHHHHCCCCCCCCCCEEEECCCCCC
T ss_conf 999999987--------------------------464338889998776--3300765022568789762440258999
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7467579999999999857899828998259831656569898999999999998323
Q gi|254780274|r 247 SKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVNSY 304 (317)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~~~~ 304 (317)
T Consensus 368 ~sP~~d~---~Lia~sS----~~Gk~~~i~~~p----v-~~~~~~aL~~~~~Wl~~~l 413 (414)
T PRK05077 368 FSPEEDS---RLIASSS----ADGKLLEIPFKP----V-YRNFDKALQEIIDWLEDKL 413 (414)
T ss_pred CCCHHHH---HHHHHHC----CCCCEEECCCCC----H-HHHHHHHHHHHHHHHHHHC
T ss_conf 7986889---9999744----588456447863----4-6679999999999998643