HHsearch alignment for GI: 254780274 and conserved domain: TIGR03343
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.97 E-value=2.7e-29 Score=213.65 Aligned_cols=263 Identities=13% Similarity=0.075 Sum_probs=148.3
Q ss_pred EECCCE-EEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHH---HHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHH
Q ss_conf 508937-899999734889996799998868789888999999---9998698999958602088553678766655639
Q gi|254780274|r 8 TEDETI-HKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFRE---YFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSD 83 (317)
Q Consensus 8 ~~~~~~-~~~~~~~~~~~~~p~~~vl~~HG~~~~~~~~~~~~~---~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~ 83 (317)
T Consensus 12 v~~~~v~~~ri~-Y~~~G~G~-p-vvllHG~~~~~~~W~~~~~~l~~~~~~~yrVIa~Dl~G~G~S~~~~~~~~----~~ 84 (282)
T TIGR03343 12 INEKGLSNFRIH-YNEAGNGE-A-VIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQ----RG 84 (282)
T ss_pred ECCCCCCCEEEE-EEEECCCC-E-EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC----CH
T ss_conf 558873878999-99974688-1-89883999874278999997799997898599971899888998765553----24
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCC-HHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999985599559999338722899999996832321320227777754410-15668887777530563
Q gi|254780274|r 84 TTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYS-CMLMTLLLKIEKFFKGS 162 (317)
Q Consensus 84 ~~~~~d~~~~~~~~~~~~~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 162 (317)
T Consensus 85 ~~~a~~~~~lld~L----~i~~~~lvG~S~GG~iA~~~A~~~P~rV~~LvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (282)
T TIGR03343 85 LVNARAVKGLMDAL----DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAE- 159 (282)
T ss_pred HHHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC-
T ss_conf 79999999999974----9983799973737999999999786862478998887666212465708899999997515-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HH-HHHHHCCCCCCCEEE
Q ss_conf 210234333111110011100123344574468888764211578978999999999850--00-233310356884799
Q gi|254780274|r 163 DTPSRLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDI--SS-RGSFNPLSRFIPFCL 239 (317)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~Pvll 239 (317)
T Consensus 160 ~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PtLv 228 (282)
T TIGR03343 160 PSYETLKQMLNVFLFD---------QS-LITEELLQGRWENIQ-RQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLV 228 (282)
T ss_pred CCHHHHHHHHHHHCCC---------HH-HCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEE
T ss_conf 7899999999985348---------00-068999999999987-297889999999764012023447887218987799
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 972688874675799999999998578998289982598316565698989999999999983
Q gi|254780274|r 240 IGGGNVSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVN 302 (317)
Q Consensus 240 i~G~~D~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~~ 302 (317)
T Consensus 229 i~G~~D~~~p~--~~~~~l~~~-----ip~a~l~~i~~aGH--~~~~E~P~~fn~~l~~FLk~ 282 (282)
T TIGR03343 229 TWGRDDRFVPL--DHGLKLLWN-----MPDAQLHVFSRCGH--WAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred EEECCCCCCCH--HHHHHHHHH-----CCCCEEEEECCCCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 98378874589--999999986-----89988999899999--54886499999999998486