HHsearch alignment for GI: 254780274 and conserved domain: TIGR03343

>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.97  E-value=2.7e-29  Score=213.65  Aligned_cols=263  Identities=13%  Similarity=0.075  Sum_probs=148.3

Q ss_pred             EECCCE-EEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHH---HHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHH
Q ss_conf             508937-899999734889996799998868789888999999---9998698999958602088553678766655639
Q gi|254780274|r    8 TEDETI-HKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFRE---YFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSD   83 (317)
Q Consensus         8 ~~~~~~-~~~~~~~~~~~~~p~~~vl~~HG~~~~~~~~~~~~~---~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~   83 (317)
T Consensus        12 v~~~~v~~~ri~-Y~~~G~G~-p-vvllHG~~~~~~~W~~~~~~l~~~~~~~yrVIa~Dl~G~G~S~~~~~~~~----~~   84 (282)
T TIGR03343        12 INEKGLSNFRIH-YNEAGNGE-A-VIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQ----RG   84 (282)
T ss_pred             ECCCCCCCEEEE-EEEECCCC-E-EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC----CH
T ss_conf             558873878999-99974688-1-89883999874278999997799997898599971899888998765553----24


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCC-HHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999985599559999338722899999996832321320227777754410-15668887777530563
Q gi|254780274|r   84 TTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYS-CMLMTLLLKIEKFFKGS  162 (317)
Q Consensus        84 ~~~~~d~~~~~~~~~~~~~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  162 (317)
T Consensus        85 ~~~a~~~~~lld~L----~i~~~~lvG~S~GG~iA~~~A~~~P~rV~~LvL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (282)
T TIGR03343        85 LVNARAVKGLMDAL----DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAE-  159 (282)
T ss_pred             HHHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHHHHHCHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC-
T ss_conf             79999999999974----9983799973737999999999786862478998887666212465708899999997515-


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HH-HHHHHCCCCCCCEEE
Q ss_conf             210234333111110011100123344574468888764211578978999999999850--00-233310356884799
Q gi|254780274|r  163 DTPSRLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDI--SS-RGSFNPLSRFIPFCL  239 (317)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~Pvll  239 (317)
T Consensus       160 ~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PtLv  228 (282)
T TIGR03343       160 PSYETLKQMLNVFLFD---------QS-LITEELLQGRWENIQ-RQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLV  228 (282)
T ss_pred             CCHHHHHHHHHHHCCC---------HH-HCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEE
T ss_conf             7899999999985348---------00-068999999999987-297889999999764012023447887218987799


Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             972688874675799999999998578998289982598316565698989999999999983
Q gi|254780274|r  240 IGGGNVSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVN  302 (317)
Q Consensus       240 i~G~~D~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~~  302 (317)
T Consensus       229 i~G~~D~~~p~--~~~~~l~~~-----ip~a~l~~i~~aGH--~~~~E~P~~fn~~l~~FLk~  282 (282)
T TIGR03343       229 TWGRDDRFVPL--DHGLKLLWN-----MPDAQLHVFSRCGH--WAQWEHADAFNRLVIDFLRN  282 (282)
T ss_pred             EEECCCCCCCH--HHHHHHHHH-----CCCCEEEEECCCCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf             98378874589--999999986-----89988999899999--54886499999999998486