HHsearch alignment for GI: 254780274 and conserved domain: TIGR03611
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.97 E-value=2.6e-29 Score=213.83 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=150.6
Q ss_pred EECCCCC--CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7348899--96799998868789888999999999869899995860208855367876665563999999999999999
Q gi|254780274|r 20 YNQTHKT--PRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLI 97 (317)
Q Consensus 20 ~~~~~~~--p~~~vl~~HG~~~~~~~~~~~~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (317)
T Consensus 3 y~~~g~~~~~~P~lvllHG~~~~~~~w~~~~~~L~~~-~rvi~~Dl~G~G~S~~~~~----~~ys~~~~a~dl~~~l~~l 77 (257)
T TIGR03611 3 YELHGPPDADAPTVVLSSGLGGSGSYWAPQLDVLTQR-FHVVTYDHRGTGRSPEELP----PGYSIAHMADDVLQLLDAL 77 (257)
T ss_pred EEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHC
T ss_conf 9995899999995999799866888999999998269-8699978999999999999----9999999999999999976
Q ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 98559955999933872289999999683232132022777775441015668887777530563210234333111110
Q gi|254780274|r 98 SEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLW 177 (317)
Q Consensus 98 ~~~~~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (317)
T Consensus 78 ----~~~~~~lvG~S~Gg~va~~~a~~~P~~V~~lil~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ 149 (257)
T TIGR03611 78 ----GIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIAL---LQHA-GPEAYVHAQALFLY 149 (257)
T ss_pred ----CCCCCEEEEECCCHHHHHHHHHHCHHHEEEEEEECCCCCCCHHHHHHHHHHHHH---HHHC-CHHHHHHHHHHHHC
T ss_conf ----998726998477289999999969565408889888666883566678999999---9832-77889987677516
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 01110012334457446888876421157897899999999985000233310356884799972688874675799999
Q gi|254780274|r 178 NRNNQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLIGGGNVSSKIEDLTQTYK 257 (317)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlli~G~~D~~~~~~~~~~~~ 257 (317)
T Consensus 150 ---~~~~~~~-~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~l~--~i~~P~Lii~G~~D~~~p~--~~~~~ 219 (257)
T TIGR03611 150 ---PADWISE-NAARLAAD-EAHALAHFP-GKANVLRRINALEAFDVSARLD--RIQHPVLLIANRDDMLVPY--TQSLR 219 (257)
T ss_pred ---CHHHHHH-HHHHHHHH-HHHHHHHCC-CHHHHHHHHHHHHCCCHHHHHH--HCCCCEEEEEECCCCCCCH--HHHHH
T ss_conf ---7454423-04677689-999987377-6889999999886258488885--4899779996268876899--99999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999857899828998259831656569898999999999998
Q gi|254780274|r 258 LTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIV 301 (317)
Q Consensus 258 ~~~~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~ 301 (317)
T Consensus 220 ~~~~-----ip~~~~~~i~~~GH~~~~--e~P~~~~~~l~~FLk 256 (257)
T TIGR03611 220 LAAA-----LPNAQLKLLPYGGHASNV--TDPETFNRALLDFLK 256 (257)
T ss_pred HHHH-----CCCCEEEEECCCCCCHHH--HCHHHHHHHHHHHHC
T ss_conf 9987-----899889998999971078--699999999999967