RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780274|ref|YP_003064687.1| lysophospholipase protein
[Candidatus Liberibacter asiaticus str. psy62]
(317 letters)
>gnl|CDD|32448 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 54.7 bits (131), Expect = 3e-08
Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 20/236 (8%)
Query: 27 PRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYR---NTIKTTSDYLRDYPKNTSD 83
P+ +++ + E+ Y + + A VY R + + ++ +
Sbjct: 33 PKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSF------ 86
Query: 84 TTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEK 143
V D+ I+E V L G+S+G +IAL L +YP + G+ L +
Sbjct: 87 ADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSS--PALG- 143
Query: 144 YSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILD 203
L +L++ R+ L D + +D + + L
Sbjct: 144 ----LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLI 199
Query: 204 SNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLIGGGN--VSSKIEDLTQTYK 257
P+S W++ +A + + + + +P L+ GG+ V +E L + ++
Sbjct: 200 GVGGPVSRWVDLALLAGRVPAL--RDAPAIALPVLLLQGGDDRVVDNVEGLARFFE 253
>gnl|CDD|36668 KOG1455, KOG1455, KOG1455, Lysophospholipase [Lipid transport and
metabolism].
Length = 313
Score = 42.2 bits (99), Expect = 2e-04
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 21 NQTHKTPRAIILACQSI-EENIEDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPK 79
+ PR ++ C E + Y + A+ AVY Y + SD L Y
Sbjct: 47 PLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGR--SDGLHAYVP 104
Query: 80 NTSDTTIVCDVMKLRTLISEKHGNTSV--LLFGYSLGTIIALSTLLKYPQKFSGIAL 134
+ +V DV+ I E+ N + LFG S+G +AL LK P + G L
Sbjct: 105 SFDL--VVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAIL 159
>gnl|CDD|30749 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 37.6 bits (87), Expect = 0.005
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 106 VLLFGYSLGTIIALSTLLKYPQKFSGIAL 134
++L G+S G IALS L P F+G L
Sbjct: 101 IILIGFSQGANIALSLGLTLPGLFAGAIL 129
>gnl|CDD|30941 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 35.1 bits (78), Expect = 0.023
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 99 EKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWN 136
+ G V+L G+S+G +AL+ L++P + G+ L
Sbjct: 83 DALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120
>gnl|CDD|144228 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 225
Score = 34.8 bits (80), Expect = 0.030
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 99 EKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIAL 134
+ G V L G+S+G +IAL+ KYP + + L
Sbjct: 36 QALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVL 71
>gnl|CDD|145406 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 32.7 bits (75), Expect = 0.12
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 106 VLLFGYSLGTIIALSTLLKYPQKFSGI 132
++L G+S G +AL T L PQ +GI
Sbjct: 104 IILGGFSQGGAVALYTALTLPQPLAGI 130
>gnl|CDD|39380 KOG4178, KOG4178, KOG4178, Soluble epoxide hydrolase [Lipid
transport and metabolism].
Length = 322
Score = 31.8 bits (72), Expect = 0.24
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 76 DYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALW 135
D P + S+ TI V + L+ + G L G+ G I+A L YP++ G+
Sbjct: 86 DAPPHISEYTIDELVGDIVALL-DHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTL 144
Query: 136 N 136
N
Sbjct: 145 N 145
>gnl|CDD|34644 COG5039, COG5039, Exopolysaccharide biosynthesis protein
[Carbohydrate transport and metabolism / Cell envelope
biogenesis, outer membrane].
Length = 339
Score = 31.5 bits (71), Expect = 0.29
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 190 DHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLIGGGNVSSKI 249
DH++ + ++ + + + GGGN+
Sbjct: 45 DHAIAYAEKAFLKQHYGDKVYYEASVKDFSASELIEIKSDIPE--DIIFFTGGGNLG--- 99
Query: 250 EDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHN 286
DL Y+ F D ++ LP +++ D N
Sbjct: 100 -DLYPDYQNFREKIISTFPDYKIIILPQSIYFQDQKN 135
>gnl|CDD|32647 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 31.5 bits (71), Expect = 0.34
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 108 LFGYSLGTIIALSTLLKYPQKFSGIAL 134
+ G+SLG + L LL YP F L
Sbjct: 141 IIGHSLGGLFVLFALLTYPDCFGRYGL 167
>gnl|CDD|36667 KOG1454, KOG1454, KOG1454, Predicted hydrolase/acyltransferase
(alpha/beta hydrolase superfamily) [General function
prediction only].
Length = 326
Score = 30.4 bits (68), Expect = 0.59
Identities = 46/240 (19%), Positives = 73/240 (30%), Gaps = 30/240 (12%)
Query: 80 NTSDTTIVCDVMKLRTLIS---EKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWN 136
+ + + +L LI ++ V L G+SLG I+AL YP+ + L +
Sbjct: 101 SPLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLD 160
Query: 137 LDLCFEKY--SCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDHSVK 194
L L Y + L ++KF + L L + +
Sbjct: 161 L-LGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSE-GLLRCLKVVYTDPS 218
Query: 195 KNSQNYIL-----DSNHIPISVWLEFMSMATDISSRGSFNPLS-----RFIPFCLIGGGN 244
+ + + H L N LS P +I G
Sbjct: 219 RLLEKLLHLLSRPVKEHFHRDARLSLFL----ELLGFDENLLSLIKKIWKCPVLIIWGD- 273
Query: 245 VSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVNSY 304
+I L +L +L N E +I P H PH P LR++I
Sbjct: 274 -KDQIVPLELAEELKKKLPNAELVEI-----PGAGH--LPHLERPEEVAALLRSFIARLR 325
>gnl|CDD|35887 KOG0668, KOG0668, KOG0668, Casein kinase II, alpha subunit [Signal
transduction mechanisms, Cell cycle control, cell
division, chromosome partitioning, Transcription].
Length = 338
Score = 29.9 bits (67), Expect = 0.87
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 122 LLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMR 170
L+ Y + +W+L CML +++ + E FF G D +L++
Sbjct: 204 LVDYQMYDYSLDMWSL-------GCMLASMIFRKEPFFHGHDNYDQLVK 245
>gnl|CDD|144380 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 243
Score = 29.3 bits (66), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 108 LFGYSLGTIIALSTLLKYPQKFS 130
L G S+G + AL L YP +F
Sbjct: 115 LAGQSMGGLGALYLALHYPDRFG 137
>gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase
(CMS) and related proteins, N-terminal catalytic TIM
barrel domain. Citramalate synthase (CMS) catalyzes the
conversion of pyruvate and acetyl-CoA to (R)-citramalate
in the first dedicated step of the citramalate pathway.
Citramalate is only found in Leptospira interrogans and
a few other microorganisms. This family belongs to the
DRE-TIM metallolyase superfamily. DRE-TIM metallolyases
include 2-isopropylmalate synthase (IPMS),
alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 280
Score = 29.3 bits (66), Expect = 1.7
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 18 HSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEEN---VAVYIYSYRNTIKTTSDYL 74
H Q KTP EE+ D + EY A +N V +Y+ + N ++ + DY+
Sbjct: 101 HCTEQLRKTP----------EEHFADIREVIEY-AIKNGIEVNIYLEDWSNGMRDSPDYV 149
Query: 75 RDYPKNTSDTTI 86
SD I
Sbjct: 150 FQLVDFLSDLPI 161
>gnl|CDD|32528 COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic
ion transport and metabolism].
Length = 299
Score = 28.0 bits (62), Expect = 3.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 107 LLFGYSLGTIIALSTLLKYPQKFSGIA 133
+L G SLG +++L L++P++F +
Sbjct: 180 VLAGDSLGGLVSLYAGLRHPERFGHVL 206
>gnl|CDD|34934 COG5368, COG5368, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 451
Score = 27.7 bits (61), Expect = 3.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 145 SCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRNNQNW 184
+ +LM LL +F G D +R DL+ R + W
Sbjct: 126 TALLMAGLLCARAYFDGQDEDEIEIRQSAADLYERVDWAW 165
>gnl|CDD|35263 KOG0040, KOG0040, KOG0040, Ca2+-binding actin-bundling protein
(spectrin), alpha chain (EF-Hand protein superfamily)
[Cytoskeleton].
Length = 2399
Score = 27.7 bits (61), Expect = 4.9
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 1 MSQKTFLTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYI 60
+ + F ED + + S NQ ++ +A +++ED ++Y A+ N A
Sbjct: 851 VEEGHFAAED--VRSRLKSLNQNWESLKA---KASQRRQDLEDSLQAQQYLADANEAESW 905
Query: 61 YSYRNTIKTTSDYLRD 76
+ I ++DY +D
Sbjct: 906 MREKEPIVGSTDYGKD 921
>gnl|CDD|39592 KOG4391, KOG4391, KOG4391, Predicted alpha/beta hydrolase BEM46
[General function prediction only].
Length = 300
Score = 27.3 bits (60), Expect = 5.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 55 NVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLFGYSLG 114
+ V I SYR K+ + K S+ + D + R + + T ++LFG SLG
Sbjct: 106 KMNVLIVSYRGYGKSEGSPSEEGLKLDSEAVL--DYLMTRPDLDK----TKIVLFGRSLG 159
Query: 115 TIIALSTLLKYPQKFSGIALWN 136
+A+ K + S I + N
Sbjct: 160 GAVAIHLASKNSDRISAIIVEN 181
>gnl|CDD|114026 pfam05277, DUF726, Protein of unknown function (DUF726). This
family consists of several uncharacterized eukaryotic
proteins.
Length = 343
Score = 27.4 bits (61), Expect = 5.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 95 TLISEKHGNTSVLLFGYSLGTIIALSTLLK-YPQKFSGI 132
LIS G V L G+SLG + LL+ +K G+
Sbjct: 209 ALISRNLGVRPVTLIGFSLGARVIFYCLLELAKRKAYGL 247
>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily. Rab4 has been implicated in
numerous functions within the cell. It helps regulate
endocytosis through the sorting, recycling, and
degradation of early endosomes. Mammalian Rab4 is
involved in the regulation of many surface proteins
including G-protein-coupled receptors, transferrin
receptor, integrins, and surfactant protein A.
Experimental data implicate Rab4 in regulation of the
recycling of internalized receptors back to the plasma
membrane. It is also believed to influence
receptor-mediated antigen processing in B-lymphocytes,
in calcium-dependent exocytosis in platelets, in
alpha-amylase secretion in pancreatic cells, and in
insulin-induced translocation of Glut4 from internal
vesicles to the cell surface. Rab4 is known to share
effector proteins with Rab5 and Rab11. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated
sequences in this CD, the lipid modification site is not
available for annotation.
Length = 161
Score = 27.2 bits (61), Expect = 5.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 221 DISSRGSFNPLSRFI 235
DI++R SF L ++
Sbjct: 81 DITNRTSFEALPTWL 95
>gnl|CDD|36343 KOG1128, KOG1128, KOG1128, Uncharacterized conserved protein,
contains TPR repeats [General function prediction only].
Length = 777
Score = 27.3 bits (60), Expect = 5.9
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 150 TLLLKIEKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDH-SVKKNSQNYILD----- 203
L++EK R +T + N + W N + +KK + +
Sbjct: 527 CAALQLEKEQAAVKA---FHRCVTLEPDNA--EAWNNLSTAYIRLKKKKRAFRKLKEALK 581
Query: 204 SNHIPISVWLEFMSMATDIS 223
N+ +W +M ++ D+
Sbjct: 582 CNYQHWQIWENYMLVSVDVG 601
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,938,869
Number of extensions: 203094
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 29
Length of query: 317
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,232,491
Effective search space: 943845493
Effective search space used: 943845493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)