HHsearch results for GI: 254780275 and protein with PDBid: 1p6v_A
>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA complex, RNA binding protein/RNA complex; 3.20A {Aquifex aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A 1zc8_K
Probab=100.00 E-value=0 Score=420.66 Aligned_cols=148 Identities=44% Similarity=0.728 Sum_probs=143.9
Q ss_pred CCEEEEEECCEEEEEEEEEEEECCEEEEEHHHHHHHH-CCCEEEEEEEEEECCEEEEEECCCCCHHCCCCCCCCCHHHHH
Q ss_conf 8428984123331025766562241775043666762-982001115886566077740303720002332110001345
Q gi|254780275|r 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRK 88 (159)
Q Consensus 10 ~~~ii~~NkkA~~~Y~i~e~~eAGIvL~G~EVKSiR~-g~v~l~~sy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R~RK 88 (159)
+..+|++||||+|||+|+|+|||||||+||||||||+ |+|||+||||.+++||+||+||||+||.+++.++|||+|+||
T Consensus 5 ~~~~I~~NkKA~~~Y~i~e~~eAGivL~G~EVKSiR~~gkv~l~dsy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R~RK 84 (156)
T 1p6v_A 5 KIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPLRKRK 84 (156)
T ss_dssp CEEEEEECSTTTTTSCEEEEEECCBCCCHHHHHHHHSCCCEECTTCCEECCSSCCEECCCEECCCSCC---CCCTTCCEE
T ss_pred CCCCCEECCCCCCCEEEEEEEEEEEEEECHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 64265246633443358377998789812625978861862300028999999999980610354446556689762567
Q ss_pred HHCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5303899999998630389339999637807981999998722432110079898727888899887644
Q gi|254780275|r 89 LLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 (159)
Q Consensus 89 LLL~k~EI~kl~~~~~~kG~TiVPlkly~~~~g~~Kv~IalaKGKK~~DKR~~iK~rd~~re~~R~~K~~ 158 (159)
|||||+||.+|.+.++++|+|||||++||+ +|+|||+||||+|||+|||||+||+|||+||++|+||++
T Consensus 85 LLL~K~EI~kl~~~~~~kG~TiVPl~ly~k-~g~iKveIalakGKK~~DKR~~iK~rd~~re~~R~~K~~ 153 (156)
T 1p6v_A 85 LLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGK 153 (156)
T ss_dssp BCCCHHHHHHHHHHHHHHCCEEEEEEEEEE-SSCEEEEEEEECCCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 777599999999898548974256899990-987999999861881230567898889999999998750