HHSEARCH alignment of GI: 254780275 and SCOP domain: d1p6va_

Alignment
>d1p6va_ b.111.1.1 (A:) Small protein B (SmpB) {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=351.13  Aligned_cols=124  Identities=48%  Similarity=0.777  Sum_probs=120.0

Q ss_pred             CEEEEEECCEEEEEEEEEEEECCEEEEEHHHHHHHH-CCCEEEEEEEEEECCEEEEEECCCCCHHCCCCCCCCCHHHHHH
Q ss_conf             428984123331025766562241775043666762-9820011158865660777403037200023321100013455
Q gi|254780275|r   11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKL   89 (159)
Q Consensus        11 ~~ii~~NkkA~~~Y~i~e~~eAGIvL~G~EVKSiR~-g~v~l~~sy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R~RKL   89 (159)
                      .-+|++||||+|||+|+|+|||||||+||||||||+ |++||.||||.+++||+||.||||+||.+++.++|||+|+|||
T Consensus         4 ~~~i~~NkkA~~~Y~i~d~~eAGivL~G~EVKSiR~~g~~~l~~sy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R~RKL   83 (128)
T d1p6va_           4 IIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPLRKRKL   83 (128)
T ss_dssp             EEEEEECSTTTTTSCEEEEEECCBCCCHHHHHHHHSCCCEECTTCCEECCSSCCEECCCEECCCSCC---CCCTTCCEEB
T ss_pred             EEEEEECCCCCCEEEEEEEEEEEEEEEEEEEHHHHHCCCCCEECCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             13522357251004774889987899101506268649541343589998792899825335642332236786405666


Q ss_pred             HCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEECCCCC
Q ss_conf             3038999999986303893399996378079819999987224321
Q gi|254780275|r   90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN  135 (159)
Q Consensus        90 LL~k~EI~kl~~~~~~kG~TiVPlkly~~~~g~~Kv~IalaKGKK~  135 (159)
                      ||||+||.+|.+.++++|+|+|||++||+ +|+|||+||||||||.
T Consensus        84 LLhk~EI~kl~~~~~~kG~TiVPl~ly~~-~~~iKv~IaLakGKKl  128 (128)
T d1p6va_          84 LLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKGKKL  128 (128)
T ss_dssp             CCCHHHHHHHHHHHHHHCCEEEEEEEEEE-SSCEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEEE-CCEEEEEEEEECCCCC
T ss_conf             65199999999898546924998875890-9868999998605669


SCOP domain information

class: All beta proteins
fold: Small protein B (SmpB)
superfamily: Small protein B (SmpB)
family: Small protein B (SmpB)
domain: Small protein B (SmpB)
species: Aquifex aeolicus [TaxId: 63363]