RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780275|ref|YP_003064688.1| SsrA-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>1j1h_A Small protein B; SMPB, SSRA associated protein, OB fold,
           riken structural genomics/proteomics initiative, RSGI,
           structural genomics; NMR {Thermus thermophilus} (A:)
          Length = 144

 Score =  200 bits (511), Expect = 7e-53
 Identities = 71/143 (49%), Positives = 96/143 (67%)

Query: 12  KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
             V +NR+AR++Y I+ ++EAGI L GTEVKSLR  KV+ + S+A FE+ E++L N YI 
Sbjct: 2   APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIA 61

Query: 72  EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
            Y + +  N  PRR RKLLL K E+ RL   V + G+TLVP+KIYFN +G AK+ L LA+
Sbjct: 62  PYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLAR 121

Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154
           GKK Y+KR  +KK    R    +
Sbjct: 122 GKKAYEKRREDKKEAVRRALEEL 144


>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation,
           protein-RNA complex, RNA binding protein/RNA complex;
           3.20A {Aquifex aeolicus} (A:)
          Length = 156

 Score =  197 bits (502), Expect = 7e-52
 Identities = 65/153 (42%), Positives = 92/153 (60%), Gaps = 2/153 (1%)

Query: 8   NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLR-VSKVNISDSYATFENDEIWLT 66
           +     +++N++A+  Y I+ ++EAGIVL G+EVKSLR    V+  DS+   EN E WL 
Sbjct: 3   SDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLY 62

Query: 67  NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
           N YI  Y  A   NH P R RKLLL KREI RLY  V+  G T++P+K+Y+      K+ 
Sbjct: 63  NLYIAPYKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVL 121

Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
           +ALA+GKK YD+R   K++   R+  R  +   
Sbjct: 122 IALAKGKKLYDRRRELKEKAMKRELEREFKGKI 154


>1wjx_A Small protein B, SSRA-binding protein; RNA binding protein,
           structural genomics, riken structural
           genomics/proteomics initiative, RSGI; 1.70A {Thermus
           thermophilus} (A:)
          Length = 122

 Score =  177 bits (452), Expect = 5e-46
 Identities = 64/120 (53%), Positives = 86/120 (71%)

Query: 14  VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
           V +NR+AR++Y I+ ++EAGI L GTEVKSLR  KV+ + S+A FE+ E++L N YI  Y
Sbjct: 3   VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 62

Query: 74  LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
            + +  N  PRR RKLLL K E+ RL   V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 63  EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 122


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,199,235
Number of extensions: 50314
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 18
Length of query: 159
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 77
Effective length of database: 2,184,039
Effective search space: 168171003
Effective search space used: 168171003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)