RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780275|ref|YP_003064688.1| SsrA-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>d1wjxa_ b.111.1.1 (A:) Small protein B (SmpB) {Thermus thermophilus
           [TaxId: 274]}
          Length = 120

 Score =  150 bits (381), Expect = 5e-38
 Identities = 64/120 (53%), Positives = 86/120 (71%)

Query: 14  VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
           V +NR+AR++Y I+ ++EAGI L GTEVKSLR  KV+ + S+A FE+ E++L N YI  Y
Sbjct: 1   VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 60

Query: 74  LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
            + +  N  PRR RKLLL K E+ RL   V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 61  EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 120


>d1p6va_ b.111.1.1 (A:) Small protein B (SmpB) {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 128

 Score =  138 bits (350), Expect = 2e-34
 Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 2/125 (1%)

Query: 11  KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLR-VSKVNISDSYATFENDEIWLTNSY 69
              +++N++A+  Y I+ ++EAGIVL G+EVKSLR    V+  DS+   EN E WL N Y
Sbjct: 4   IIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLY 63

Query: 70  IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
           I  Y  A   NH P R RKLLL KREI RLY  V+  G T++P+K+Y+      K+ +AL
Sbjct: 64  IAPYKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIAL 122

Query: 130 AQGKK 134
           A+GKK
Sbjct: 123 AKGKK 127


>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli
           [TaxId: 562]}
          Length = 115

 Score = 24.3 bits (53), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 84  RRNRKLLLSKREIHRLYAAVRRDGMTL 110
           RR RK    +  I R+ AA R++G++ 
Sbjct: 48  RRQRKRQFRQLWIARINAAARQNGISY 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 589,403
Number of extensions: 25604
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 16
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)