HHsearch alignment for GI: 254780276 and conserved domain: COG0042
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].
Probab=95.63 E-value=0.19 Score=31.12 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC----------CCCCHHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 23443003674102789999753432102443200--12343----------34317889999999875302-3301210
Q gi|254780276|r 68 ASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY----------NKPNRRGLLAHFGEIATTVS-SPIYIYN 134 (292)
Q Consensus 68 ~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~----------~~~~~~~i~~~~~~i~~~~~-~pi~iYn 134 (292)
T Consensus 64 ~~e~p~~vQl~gsdp~~laeaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVK- 142 (323)
T COG0042 64 EEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVK- 142 (323)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEE-
T ss_conf 6678779997389989999999999866999898768999289808984477717989999999999985388874999-
Q ss_pred CHHHCCCCCC---HHHHHHHHHHCCHHHHHH---------C-CCCCHHHHHHHHHHCCCCEEECCCC--C-CCHHHHHH-
Q ss_conf 0111112111---068999743203023310---------0-1221135899997359840320132--2-10012432-
Q gi|254780276|r 135 NPSRTVIEMD---VDTMAELAATYPNIVGVK---------D-ATGKIELVSEQRLSCGFDFIQLSGE--D-SSALGFNA- 197 (292)
Q Consensus 135 ~P~~~g~~~~---~~~l~~L~~~~pni~giK---------~-~~~~~~~~~~~~~~~~~~~~v~~G~--~-~~~~~~~~- 197 (292)
T Consensus 143 --iRlG~d~~~~~~~~ia~~~~~~-G~~~ltVHgRtr~~~y~~~a~~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 143 --IRLGWDDDDILALEIARILEDA-GADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred --EECCCCCHHCCHHHHHHHHHHC-CCCEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf --8578780020099999999967-9878999556676468986487999999986799759857994999999999984
Q ss_pred HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHCC---CCHHHH-HHHHH-HCCCCCCCCCC
Q ss_conf 0334455222232-110024444431178827--9999999999999998426---893899-99999-86988998767
Q gi|254780276|r 198 HGGVGCISVTANV-VPRICAEFQQAMIRGDYR--QALLYQDKLMPLHQALFME---PAVCCV-KYALS-RLGRNVSLAVR 269 (292)
Q Consensus 198 ~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~--~A~~l~~~l~~l~~~~~~~---~~~~~~-K~~l~-~~G~~~~~~~R 269 (292)
T Consensus 220 tg~DgVMigRga~~nP~l~~~i-~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~rkh~~~~~~~~~~a~~~r 298 (323)
T COG0042 220 TGADGVMIGRGALGNPWLFRQI-DYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKGLPGARELR 298 (323)
T ss_pred HCCCEEEECHHHHCCCHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 1898799743531695575533-553068878877999999999999999986241069999999999986485379999
Q ss_pred C
Q ss_conf 8
Q gi|254780276|r 270 S 270 (292)
Q Consensus 270 ~ 270 (292)
T Consensus 299 ~ 299 (323)
T COG0042 299 R 299 (323)
T ss_pred H
T ss_conf 9