HHsearch alignment for GI: 254780276 and conserved domain: COG0329
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=506.17 Aligned_cols=289 Identities=46% Similarity=0.679 Sum_probs=276.9
Q ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 93001112017738988868999999999999769989998672325010899999998654311012344300367410
Q gi|254780276|r 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 1 ~~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
T Consensus 4 ~~~Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 4 KFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 66874012038998999839999999999999849988997986657221699999999999999968977789862877
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 27899997534321024432001234334317889999999875302330121001111121110689997432030233
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~-~~nivg 162 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNIVG 162 (299)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHC-CCCEEE
T ss_conf 7999999999999709999998489788989799999999999851899899978752489999999999827-898899
Q ss_pred HHCCCCCHHHHHHHHHHCCC-CEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 10012211358999973598-40320132210012432033445522223211002444443117882799999999999
Q gi|254780276|r 161 VKDATGKIELVSEQRLSCGF-DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 161 iK~~~~~~~~~~~~~~~~~~-~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
T Consensus 163 iKd~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~~ 242 (299)
T COG0329 163 VKDSSGDLDRLEEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLLP 242 (299)
T ss_pred EEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEECCCHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98478899999999986487662898266588889986779858841001279999999999987899999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHC
Q ss_conf 99998426893899999998698899876788889879899999-99999855
Q gi|254780276|r 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIA-IDQALERL 291 (292)
Q Consensus 240 l~~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~-i~~~l~~l 291 (292)
T Consensus 243 l~~~~~~~~~~~~iK~~l~~~G~~~~~~~R~Pl~~l~~~-~~~~~~~~~~~~~ 294 (299)
T COG0329 243 LIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEE-EREKVLEAALAAL 294 (299)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHH
T ss_conf 999986257848999999976998898778999999989-9999999999875