HHsearch alignment for GI: 254780276 and conserved domain: PRK05437
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional.
Probab=96.10 E-value=0.053 Score=35.18 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=86.3
Q ss_pred ECCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-H
Q ss_conf 1120177389888689999-9999999976998999867232501089999999865431101234430036741027-8
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAF-VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT-R 83 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~-~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~-~ 83 (292)
T Consensus 61 ~P~~I~aMTG-G~~~~~~IN~~LA~~A~~~gi~--m~vGS--qr~al~~~~~~~sf~vvR~~~p-~~~l~aNiGa~~~~~ 134 (351)
T PRK05437 61 APFLINAMTG-GSEKAKEINRKLAEAAEELGIA--MGVGS--QRAALKDPELADSFSVVRKVAP-DGLLFANIGAVQLYG 134 (351)
T ss_pred CCEEEECCCC-CCHHHHHHHHHHHHHHHHCCCC--EEECC--HHHHHCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCC
T ss_conf 8768865346-8754628999999999983987--77331--7888539145656999998688-873886127210143
Q ss_pred HHHHHHHHH-HHCCCCCCCEECCCC----CCC---CHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf 999975343-210244320012343----343---178899999998753023301210011111211106899974320
Q gi|254780276|r 84 ESVELAQYA-HSIGADALLVVIPYY----NKP---NRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY 155 (292)
Q Consensus 84 ~~i~~a~~a-~~~Gad~i~v~~P~~----~~~---~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~ 155 (292)
T Consensus 135 ~~~~~~~~av~~i~AdAl~iHlN~~QEl~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKe----VG~Gis~e~a~~l~-~~ 209 (351)
T PRK05437 135 YGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDRIAEIVSALPVPVIVKE----VGFGISKETAKRLA-DA 209 (351)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHH-HC
T ss_conf 58999999999716781575246245402888897788999999999986799889852----15788999999999-67
Q ss_pred CHHHHHH
Q ss_conf 3023310
Q gi|254780276|r 156 PNIVGVK 162 (292)
Q Consensus 156 pni~giK 162 (292)
T Consensus 210 G-v~~Id 215 (351)
T PRK05437 210 G-VKAID 215 (351)
T ss_pred C-CCEEE
T ss_conf 9-99999