HHsearch alignment for GI: 254780276 and conserved domain: PRK09485
>PRK09485 mmuM homocysteine methyltransferase; Provisional.
Probab=94.66 E-value=0.47 Score=28.30 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCH-----HCCCHHHHHHHHHHHHHCCC------------CCCCCCCCCCCC---
Q ss_conf 9999999999997699899986723250-----10899999998654311012------------344300367410---
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGES-----STLSHEEHCRIIELCVKTVA------------SRVPVMAGIGSN--- 80 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~-----~~Ls~~Er~~~~~~~~~~~~------------~r~pii~gv~~~--- 80 (292)
T Consensus 45 Pd~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~VaGslgP~g~ 124 (308)
T PRK09485 45 PELIYQVHLDYFRAGADIAITASYQATFQGFAARGLSEAEAEALIRRSVELAKEARDDVWAEKPQRPYLLVAGSVGPYGA 124 (308)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 29999999999980878787245503789898749999999999999999999999997541368887069841575444
Q ss_pred --------------HHHHHHH----HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf --------------2789999----753432102443200123433431788999999987530233012
Q gi|254780276|r 81 --------------NTRESVE----LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 81 --------------~~~~~i~----~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
T Consensus 125 ~l~~g~ey~g~~~~~~~~~~~~~~~qi~~l~~~gvD~il~ET----~~~~~E~~~~~~~~~~~~~~pv~~ 190 (308)
T PRK09485 125 YLADGSEYRGDYGLSVEELQDFHRPRIEALLDAGADLLALET----IPNLDEAEALVELLKEFPQVPAWL 190 (308)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 237886667878999999999999999999727898899960----399999999999998557996899