HHsearch alignment for GI: 254780276 and conserved domain: PRK10415
>PRK10415 tRNA-dihydrouridine synthase B; Provisional.
Probab=96.03 E-value=0.13 Score=32.23 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999976998999867232501089999999865431101234430036741027899997534321024432
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i 100 (292)
T Consensus 22 d~~FR~l~~~~---Ga~l~~TEmv~a~~~-~~~~~~~~~-~~--~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~I 94 (321)
T PRK10415 22 DRPFRTLCYEM---GAGLTVSEMMSSNPQ-VWESDKSRL-RM--VHVDEPGIRTVQIAGSDPKEMADAARINVESGAQII 94 (321)
T ss_pred CHHHHHHHHHH---CCCEEEECCEEECHH-HHCCHHHHH-HH--CCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 89999999998---839999875871277-733848898-63--046788980599726999999999998876499989
Q ss_pred CE--ECCCC----------CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHH---HHHHHHHCCHHHHHH---
Q ss_conf 00--12343----------3431788999999987530233012100111112111068---999743203023310---
Q gi|254780276|r 101 LV--VIPYY----------NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDT---MAELAATYPNIVGVK--- 162 (292)
Q Consensus 101 ~v--~~P~~----------~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~---l~~L~~~~pni~giK--- 162 (292)
T Consensus 95 DiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvK---iRlG~~~~~~~~~~~~~~~e~a-G~~~itvHg 170 (321)
T PRK10415 95 DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLK---IRTGWAPEHRNCEEIAQLAEDC-GIQALTIHG 170 (321)
T ss_pred EEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEE---EECCCCCCHHHHHHHHHHHHHC-CCCEEEEEH
T ss_conf 431899989970798365063398999999999973448746999---8468885224399999999856-988999972
Q ss_pred -------CCCCCHHHHHHHHHHCCCCEEECCCCCCCH---HHHHH-HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCC---
Q ss_conf -------012211358999973598403201322100---12432-0334455222232-11002444443117882---
Q gi|254780276|r 163 -------DATGKIELVSEQRLSCGFDFIQLSGEDSSA---LGFNA-HGGVGCISVTANV-VPRICAEFQQAMIRGDY--- 227 (292)
Q Consensus 163 -------~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~---~~~~~-~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~--- 227 (292)
T Consensus 171 RT~~q~y~g~adw~~i~~vk~~~~iPv-i~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g~~~~~ 249 (321)
T PRK10415 171 RTRACLFNGEAEYDSIRAVKQKVSIPV-IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 (321)
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCE-EECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 213443169987799999985479978-9658919999999999862999999756653698779999999816997999
Q ss_pred ---HHHHHHH-HHHHHHHHHHHCCCCHHH-HHHHH-HHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHH
Q ss_conf ---7999999-999999999842689389-99999-986988998767888898798-999999999985
Q gi|254780276|r 228 ---RQALLYQ-DKLMPLHQALFMEPAVCC-VKYAL-SRLGRNVSLAVRSPMVSTLEK-DTMIAIDQALER 290 (292)
Q Consensus 228 ---~~A~~l~-~~l~~l~~~~~~~~~~~~-~K~~l-~~~G~~~~~~~R~Pl~~~~~~-e~~~~i~~~l~~ 290 (292)
T Consensus 250 ~~~~e~~~~~~~h~~~~~~~~g~~~~~~~~Rkh~~~Y~kg~~g~~~~R~~~~~~~~~~ev~~~l~~~~e~ 319 (321)
T PRK10415 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFEN 319 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 6999999999999999999869075699999789999588987699999997489999999999999984