HHsearch alignment for GI: 254780276 and conserved domain: PRK10550
>PRK10550 tRNA-dihydrouridine synthase C; Provisional.
Probab=96.13 E-value=0.072 Score=34.20 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC----------CCCCHHHHHHHHHHHHHHH--CCCCEEE
Q ss_conf 23443003674102789999753432102443200--12343----------3431788999999987530--2330121
Q gi|254780276|r 68 ASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY----------NKPNRRGLLAHFGEIATTV--SSPIYIY 133 (292)
Q Consensus 68 ~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~----------~~~~~~~i~~~~~~i~~~~--~~pi~iY 133 (292)
T Consensus 60 ~~~~Pv~vQl~G~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK 139 (312)
T PRK10550 60 PSGTLVRIQLLGQYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVK 139 (312)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 77883688842788899999999999769996625479997896689926853289779999999999745878995477
Q ss_pred ECHHHCCCCCCHH--HHHHHHHHCCHHHHH---------HCCC--CCHHHHHHHHHHCCCCEEECCCCCCCH---HHH-H
Q ss_conf 0011111211106--899974320302331---------0012--211358999973598403201322100---124-3
Q gi|254780276|r 134 NNPSRTVIEMDVD--TMAELAATYPNIVGV---------KDAT--GKIELVSEQRLSCGFDFIQLSGEDSSA---LGF-N 196 (292)
Q Consensus 134 n~P~~~g~~~~~~--~l~~L~~~~pni~gi---------K~~~--~~~~~~~~~~~~~~~~~~v~~G~~~~~---~~~-~ 196 (292)
T Consensus 140 ---~RlG~~~~~~~~e~~~~~~~~G-~~~ltvH~RT~~q~y~~~~~dw~~i~~~~~~~~iP-vi~NGdI~s~~d~~~~~~ 214 (312)
T PRK10550 140 ---VRLGWDSGDRKFEIADAVQQAG-ATELVVHGRTKEQGYRAEHIDWQAIGEIRQRLTIP-VIANGEIWDWQSAQQCMA 214 (312)
T ss_pred ---EECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCHHHCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHH
T ss_conf ---5358998631999999999739-98799905526535899834899999999748998-997079599999999987
Q ss_pred HHCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH--HCCCCCCCCCCCC
Q ss_conf 20334455222232-11002444443117882799999999999999984268--9389999999--8698899876788
Q gi|254780276|r 197 AHGGVGCISVTANV-VPRICAEFQQAMIRGDYRQALLYQDKLMPLHQALFMEP--AVCCVKYALS--RLGRNVSLAVRSP 271 (292)
Q Consensus 197 ~~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~~~~~--~~~~~K~~l~--~~G~~~~~~~R~P 271 (292)
T Consensus 215 ~tg~dgvMiGRgal~nP~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~rmKk~~~~~~~~~p~a~~lr~~ 293 (312)
T PRK10550 215 ISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQ-GDTGLYHVARIKQWLGYLRKEYDEATELFQE 293 (312)
T ss_pred HHCCCEEEECHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 148999996585530977999861379999989999999999999863-3103668999999999998609969999999
Q ss_pred CCCCCCHHHHHHHHHHHHHC
Q ss_conf 88987989999999999855
Q gi|254780276|r 272 MVSTLEKDTMIAIDQALERL 291 (292)
Q Consensus 272 l~~~~~~e~~~~i~~~l~~l 291 (292)
T Consensus 294 i~~~~~---~~e~~~~l~~l 310 (312)
T PRK10550 294 IRALNN---SPDIARAIQAI 310 (312)
T ss_pred HHHCCC---HHHHHHHHHHH
T ss_conf 984399---99999999863