HHsearch alignment for GI: 254780276 and conserved domain: PRK13111
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional.
Probab=94.94 E-value=0.27 Score=30.02 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
T Consensus 13 ~y~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~--~~~pivl 90 (256)
T PRK13111 13 PYITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAK--PTIPIVL 90 (256)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCCEEE
T ss_conf 88707089989999999999965999999788878876657999999999997799699999999998606--8998899
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 67410278--9999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNTR--ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~~--~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
T Consensus 91 M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipD-----LP~eE~-~~~~~~~~~~gi~~I~lvaPt-----t~~~Ri~~i~~ 159 (256)
T PRK13111 91 MTYYNPIFQYGVEAFAADAAEAGVDGLIIPD-----LPPEEA-EEFRAAAKKHGIDLIFLVAPT-----TTDERLKKIAS 159 (256)
T ss_pred EEECCHHHHHCHHHHHHHHHHCCCCEEEECC-----CCHHHH-HHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHHH
T ss_conf 8503089870999999999975997798169-----997888-999999997598089996999-----98899999996
Q ss_pred HCCHHHHH---------HCC-CCCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 20302331---------001-2211-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIVGV---------KDA-TGKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~gi---------K~~-~~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
T Consensus 160 ~s~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGIs~~e~v~~~~~~aDGvIVGSa 226 (256)
T PRK13111 160 HASGFVYYVSRAGVTGARSADAADVADLLARLKAHTDLPVAVGFGISTPEQAAAIAEGADGVIVGSA 226 (256)
T ss_pred HCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 2698599985677678876662889999999987068975885288999999999745999998689