HHsearch alignment for GI: 254780276 and conserved domain: PRK13125
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional.
Probab=92.83 E-value=0.96 Score=26.04 Aligned_cols=210 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHCCCHH---------HHHHHHHHHHHCCCCCCCCCC-C
Q ss_conf 77389888689999999999997699899986723----250108999---------999986543110123443003-6
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESSTLSHE---------EHCRIIELCVKTVASRVPVMA-G 76 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~Ls~~---------Er~~~~~~~~~~~~~r~pii~-g 76 (292)
T Consensus 8 i~yitaG~P~~e~s~~~l~~l~~-~aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~~~i~~~~r~~--~~~pivlM~ 84 (247)
T PRK13125 8 GVYLTAGWPNAETFLEAIDGLVG-LVDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDYWSLLEEVRKK--VGVPTYIMT 84 (247)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC--CCCCEEEHH
T ss_conf 88871837998999999999864-799999799889876660999999999987699899999985056--899889729
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf 741027899997534321024432001-2343343178899999998753023301210011111211106899974320
Q gi|254780276|r 77 IGSNNTRESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY 155 (292)
Q Consensus 77 v~~~~~~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~ 155 (292)
T Consensus 85 Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~---~ee~-~~~~~~~~~~gl~~I~lvsPt-----t~~~ri~~i~~~s 155 (247)
T PRK13125 85 YLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDF---PDEL-EKYVELIRRYGLAPVFFTSPK-----FPDRLIRRLSKLS 155 (247)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHHC
T ss_conf 889999769999999998599758833888754---6789-999999997698469995799-----8199999999868
Q ss_pred CHHHHH--HCCCC-----CHH-HHHHHHHHCCCCEEECCCCCC----CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 302331--00122-----113-589999735984032013221----001243203344552222321100244444311
Q gi|254780276|r 156 PNIVGV--KDATG-----KIE-LVSEQRLSCGFDFIQLSGEDS----SALGFNAHGGVGCISVTANVVPRICAEFQQAMI 223 (292)
Q Consensus 156 pni~gi--K~~~~-----~~~-~~~~~~~~~~~~~~v~~G~~~----~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~ 223 (292)
T Consensus 156 ~gFvY~~~~gvTG~~~~~~~~~~i~~ik~~~~-~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSai------Vk~---i~ 225 (247)
T PRK13125 156 PLFIYLGLYPATGVELPVYVERNIKRVRELVG-DVYLVAGFAIDSPEDAAKALSAGADGVVVGTAF------IRR---LE 225 (247)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH------HHH---HH
T ss_conf 97799994436788773259999999998569-998588328799999999985589999987899------999---99
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7882799999999999999984
Q gi|254780276|r 224 RGDYRQALLYQDKLMPLHQALF 245 (292)
Q Consensus 224 ~gd~~~A~~l~~~l~~l~~~~~ 245 (292)
T Consensus 226 ~~~~~~~~~---~v~~l~~al~ 244 (247)
T PRK13125 226 RNGVEEALS---LLKEIRGALD 244 (247)
T ss_pred HCCHHHHHH---HHHHHHHHHH
T ss_conf 769899999---9999999985