HHsearch alignment for GI: 254780276 and conserved domain: PRK13125

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional.
Probab=92.83  E-value=0.96  Score=26.04  Aligned_cols=210  Identities=18%  Similarity=0.156  Sum_probs=106.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHCCCHH---------HHHHHHHHHHHCCCCCCCCCC-C
Q ss_conf             77389888689999999999997699899986723----250108999---------999986543110123443003-6
Q gi|254780276|r   11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESSTLSHE---------EHCRIIELCVKTVASRVPVMA-G   76 (292)
Q Consensus        11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~Ls~~---------Er~~~~~~~~~~~~~r~pii~-g   76 (292)
T Consensus         8 i~yitaG~P~~e~s~~~l~~l~~-~aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~~~i~~~~r~~--~~~pivlM~   84 (247)
T PRK13125          8 GVYLTAGWPNAETFLEAIDGLVG-LVDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDYWSLLEEVRKK--VGVPTYIMT   84 (247)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC--CCCCEEEHH
T ss_conf             88871837998999999999864-799999799889876660999999999987699899999985056--899889729


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf             741027899997534321024432001-2343343178899999998753023301210011111211106899974320
Q gi|254780276|r   77 IGSNNTRESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY  155 (292)
Q Consensus        77 v~~~~~~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~  155 (292)
T Consensus        85 Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~---~ee~-~~~~~~~~~~gl~~I~lvsPt-----t~~~ri~~i~~~s  155 (247)
T PRK13125         85 YLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDF---PDEL-EKYVELIRRYGLAPVFFTSPK-----FPDRLIRRLSKLS  155 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHHC
T ss_conf             889999769999999998599758833888754---6789-999999997698469995799-----8199999999868


Q ss_pred             CHHHHH--HCCCC-----CHH-HHHHHHHHCCCCEEECCCCCC----CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             302331--00122-----113-589999735984032013221----001243203344552222321100244444311
Q gi|254780276|r  156 PNIVGV--KDATG-----KIE-LVSEQRLSCGFDFIQLSGEDS----SALGFNAHGGVGCISVTANVVPRICAEFQQAMI  223 (292)
Q Consensus       156 pni~gi--K~~~~-----~~~-~~~~~~~~~~~~~~v~~G~~~----~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~  223 (292)
T Consensus       156 ~gFvY~~~~gvTG~~~~~~~~~~i~~ik~~~~-~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSai------Vk~---i~  225 (247)
T PRK13125        156 PLFIYLGLYPATGVELPVYVERNIKRVRELVG-DVYLVAGFAIDSPEDAAKALSAGADGVVVGTAF------IRR---LE  225 (247)
T ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH------HHH---HH
T ss_conf             97799994436788773259999999998569-998588328799999999985589999987899------999---99


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7882799999999999999984
Q gi|254780276|r  224 RGDYRQALLYQDKLMPLHQALF  245 (292)
Q Consensus       224 ~gd~~~A~~l~~~l~~l~~~~~  245 (292)
T Consensus       226 ~~~~~~~~~---~v~~l~~al~  244 (247)
T PRK13125        226 RNGVEEALS---LLKEIRGALD  244 (247)
T ss_pred             HCCHHHHHH---HHHHHHHHHH
T ss_conf             769899999---9999999985