HHsearch alignment for GI: 254780276 and conserved domain: TIGR01361
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=90.87 E-value=0.43 Score=28.60 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=86.8
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCC
Q ss_conf 234430036-74102789999753432102443200------12343343178899999998753023301210011111
Q gi|254780276|r 68 ASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTV 140 (292)
Q Consensus 68 ~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g 140 (292)
T Consensus 23 ~G~~~~iAGPCsvEs~eq~~~~A~~vk~~Ga~~LRGGAfKPRTSPYsFQGlg~~gl~~l~~A~~~~GL~~v-------TE 95 (262)
T TIGR01361 23 EGSPIVIAGPCSVESEEQIVETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADETGLPVV-------TE 95 (262)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE-------EE
T ss_conf 84789986487748879999999999866740430663488888841247418999999999986099489-------88
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH--HCCCCEEECCCC----CCCHH--HHHHHCC-CCCCCCCCCCC
Q ss_conf 211106899974320302331001221135899997--359840320132----21001--2432033-44552222321
Q gi|254780276|r 141 IEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRL--SCGFDFIQLSGE----DSSAL--GFNAHGG-VGCISVTANVV 211 (292)
Q Consensus 141 ~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~~--~~~~~~~v~~G~----~~~~~--~~~~~G~-~G~is~~~n~~ 211 (292)
T Consensus 96 v-md~~d~e~~~-~y--~D~lQiGARNmQNF~LL~~vG~~~KPVLLKRG~~aTi~EwL~AAEYIl~~GsN~~V-----iL 166 (262)
T TIGR01361 96 V-MDPRDVEIVA-EY--ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGATIEEWLEAAEYILSEGSNGNV-----IL 166 (262)
T ss_pred E-ECHHHHHHHH-HH--HHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCE-----EE
T ss_conf 6-3625677787-65--11342225412256999997223797553077215899999999999846889954-----89
Q ss_pred CCHHHHHHHHHCCC
Q ss_conf 10024444431178
Q gi|254780276|r 212 PRICAEFQQAMIRG 225 (292)
Q Consensus 212 P~~~~~l~~~~~~g 225 (292)
T Consensus 167 CERGIRTfE~~TR~ 180 (262)
T TIGR01361 167 CERGIRTFEKSTRN 180 (262)
T ss_pred EECCCCCCCCHHHH
T ss_conf 97585676300245