HHsearch alignment for GI: 254780276 and conserved domain: TIGR02151
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=95.72 E-value=0.044 Score=35.74 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=107.4
Q ss_pred ECCCCCCCCCCCCCC-HHHHH-HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 112017738988868-99999-9999999769989998672325010899999998654311012344300367410278
Q gi|254780276|r 6 IPALITPFTKGNLID-EDAFV-EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTR 83 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD-~~~~~-~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~ 83 (292)
T Consensus 57 ~P~~I~aMT-GG~~~~a~~IN~~LA~aA~e~gi-~---mgvGSqraal~~P~~~~tF~~vR~~aP-~~~l~AN~GA~q~~ 130 (349)
T TIGR02151 57 APFLINAMT-GGSEEKAGKINRKLARAAEELGI-P---MGVGSQRAALKDPEVAETFEVVREEAP-NGPLIANIGAPQLV 130 (349)
T ss_pred CCEEEECCC-CCCHHHHHHHHHHHHHHHHHHCC-C---EEECHHHHHHCCCHHHHHHHHHHHHCC-CCCEEECCCHHHHH
T ss_conf 676761455-77367888998999999998198-1---543002221127124666999997679-83378717878874
Q ss_pred HH-----HHHHHHHH-HCCCCCCCEECCCCCC-------CCH-HHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHH
Q ss_conf 99-----99753432-1024432001234334-------317-8899999998753023301210011111211106899
Q gi|254780276|r 84 ES-----VELAQYAH-SIGADALLVVIPYYNK-------PNR-RGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMA 149 (292)
Q Consensus 84 ~~-----i~~a~~a~-~~Gad~i~v~~P~~~~-------~~~-~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~ 149 (292)
T Consensus 131 ~~~~~~g~~~~~~aid~i~AdAL~iHlN~~QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKE----vG~G~S~e~a~ 206 (349)
T TIGR02151 131 EGGKKYGVEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKE----VGFGISKEVAK 206 (349)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHH
T ss_conf 06534488999999987510133554323302557999701565389999999965289879982----15799889999
Q ss_pred HHHHHCCHHHHHHCCCC----CHHHHHHHHHHCC
Q ss_conf 97432030233100122----1135899997359
Q gi|254780276|r 150 ELAATYPNIVGVKDATG----KIELVSEQRLSCG 179 (292)
Q Consensus 150 ~L~~~~pni~giK~~~~----~~~~~~~~~~~~~ 179 (292)
T Consensus 207 ~L~-~~G-v~ai-Dv~G~GGTswa~vE~~Rr~~~ 237 (349)
T TIGR02151 207 LLA-DAG-VKAI-DVSGAGGTSWAAVENYRRAKE 237 (349)
T ss_pred HHH-HCC-EEEE-EECCCCCCCHHHHHHHHHHCC
T ss_conf 998-789-0088-707876755999998875157