HHsearch alignment for GI: 254780276 and conserved domain: TIGR03326
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.83 E-value=0.093 Score=33.39 Aligned_cols=122 Identities=14% Similarity=0.032 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCCCCC-CCCCCHH
Q ss_conf 12017738988868999999999999769989998672325010899999998654311012---3443003-6741027
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVPVMA-GIGSNNT 82 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~pii~-gv~~~~~ 82 (292)
T Consensus 145 PL~gtiiKPklGLs~~~~a~~~ye~~~GG~D~iKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~ 223 (412)
T TIGR03326 145 PLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITA-PV 223 (412)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CH
T ss_conf 60466556767899799999999998257773126645679887658999999999999999875874258864378-99
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 899997534321024432001234334317889999999875302330121
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
T Consensus 224 ~em~~ra~~a~e~G~~~vMv~~~~~-G~s---al~~lr~~~~d~~l~ihaH 270 (412)
T TIGR03326 224 REMERRAELVADLGGQYVMVDVVVC-GWS---ALQYIRELTEDLGLAIHAH 270 (412)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC-CCH---HHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999983998797436324-635---9999998622349779843