HHsearch alignment for GI: 254780276 and conserved domain: cd01537

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=95.51  E-value=0.15  Score=31.87  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8868999999999999769989998672325010899999998654-----31101234430036741027899997534
Q gi|254780276|r   17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQY   91 (292)
Q Consensus        17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~   91 (292)
T Consensus        37 ~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~----~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~  112 (264)
T cd01537          37 SQNDAEKQLSALENLIARGVDGIIIAPSDLTAP----TIVKLARKAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEH  112 (264)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH----HHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf             999989999999999976999999967988868----9999999759979998566788888719997779999999999


Q ss_pred             HHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf             3210244320012-343343178899999998753023301210011111211106899974320302331001221
Q gi|254780276|r   92 AHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGK  167 (292)
Q Consensus        92 a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~  167 (292)
T Consensus       113 l~~~g~~~i~~i~~~~~~~~~~-~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dai-~~~~d  187 (264)
T cd01537         113 LAEKGHRRIALLAGPLGSSTAR-ERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAI-FAAND  187 (264)
T ss_pred             HHHCCCCCEEECCCCCCCCHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE-EECCH
T ss_conf             9862986245304887770699-999999999997799985379957999899999999998508997699-98986