HHsearch alignment for GI: 254780276 and conserved domain: cd01537
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=95.51 E-value=0.15 Score=31.87 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8868999999999999769989998672325010899999998654-----31101234430036741027899997534
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQY 91 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~ 91 (292)
T Consensus 37 ~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~----~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~ 112 (264)
T cd01537 37 SQNDAEKQLSALENLIARGVDGIIIAPSDLTAP----TIVKLARKAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEH 112 (264)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH----HHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 999989999999999976999999967988868----9999999759979998566788888719997779999999999
Q ss_pred HHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 3210244320012-343343178899999998753023301210011111211106899974320302331001221
Q gi|254780276|r 92 AHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGK 167 (292)
Q Consensus 92 a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~ 167 (292)
T Consensus 113 l~~~g~~~i~~i~~~~~~~~~~-~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dai-~~~~d 187 (264)
T cd01537 113 LAEKGHRRIALLAGPLGSSTAR-ERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAI-FAAND 187 (264)
T ss_pred HHHCCCCCEEECCCCCCCCHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE-EECCH
T ss_conf 9862986245304887770699-999999999997799985379957999899999999998508997699-98986