HHsearch alignment for GI: 254780276 and conserved domain: cd02940
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.96 E-value=0.22 Score=30.63 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCE--ECCCCCC---------CCHHHHHHHHHHH
Q ss_conf 999986543110123443003674-102789999753432102443200--1234334---------3178899999998
Q gi|254780276|r 55 EHCRIIELCVKTVASRVPVMAGIG-SNNTRESVELAQYAHSIGADALLV--VIPYYNK---------PNRRGLLAHFGEI 122 (292)
Q Consensus 55 Er~~~~~~~~~~~~~r~pii~gv~-~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~~~---------~~~~~i~~~~~~i 122 (292)
T Consensus 85 ~~~~~~~~~~~~~-~~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v 163 (299)
T cd02940 85 YWLKEIRELKKDF-PDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999987527-997379885178987899999999987188889982678898761234555244999999999999
Q ss_pred HHHHCCCCEEEECHH
Q ss_conf 753023301210011
Q gi|254780276|r 123 ATTVSSPIYIYNNPS 137 (292)
Q Consensus 123 ~~~~~~pi~iYn~P~ 137 (292)
T Consensus 164 ~~~~~~Pi~vKLsP~ 178 (299)
T cd02940 164 REAVKIPVIAKLTPN 178 (299)
T ss_pred HHHCCCCEEEECCCC
T ss_conf 862478648962887