HHsearch alignment for GI: 254780276 and conserved domain: cd04728

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.10  E-value=0.56  Score=27.71  Aligned_cols=172  Identities=14%  Similarity=-0.024  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC-CCC
Q ss_conf             99999999999769989998672325010899999998654311012344300367-4102789999753432102-443
Q gi|254780276|r   22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG-ADA   99 (292)
Q Consensus        22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G-ad~   99 (292)
T Consensus        20 ~s~~~~~~ai~aSgaeivTVAlR---R~~~~~~~~~~~l~~i~~---~~~~~LPNTAGc~ta~EAvr~A~laRE~~~t~~   93 (248)
T cd04728          20 PSPAIMKEAIEASGAEIVTVALR---RVNIGDPGGESFLDLLDK---SGYTLLPNTAGCRTAEEAVRTARLAREALGTDW   93 (248)
T ss_pred             CCHHHHHHHHHHHCCCEEEEEEE---ECCCCCCCCHHHHHHHHH---CCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             99999999999968976999986---305788885268987523---386687654011679999999999999848986


Q ss_pred             CCE---ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCC--------CCH
Q ss_conf             200---123433431788999999987530233012100111112111068999743203023310012--------211
Q gi|254780276|r  100 LLV---VIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDAT--------GKI  168 (292)
Q Consensus       100 i~v---~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~--------~~~  168 (292)
T Consensus        94 IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~G-F~VlpY~~~-------D~v~akrLe-~~Gc~avMPlgsPIGSg~Gl~n~  164 (248)
T cd04728          94 IKLEVIGDDKTLLPDPIETLKAAEILVKEG-FTVLPYCTD-------DPVLAKRLE-DAGCAAVMPLGSPIGSGQGLLNP  164 (248)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHHHCC-CEEEEECCC-------CHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCH
T ss_conf             999981797677988689999999999889-989786788-------999999999-74953452045643479887999


Q ss_pred             HHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf             35899997359840320132--21001243203344552222
Q gi|254780276|r  169 ELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA  208 (292)
Q Consensus       169 ~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~  208 (292)
T Consensus       165 ~~l~~i~e~~~vPvIVDAGiG~pS~Aa~aMElG~daVL~NTA  206 (248)
T cd04728         165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA  206 (248)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHH
T ss_conf             999999984799889847999756789998726553345468