HHsearch alignment for GI: 254780276 and conserved domain: cd04739
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.39 E-value=0.067 Score=34.44 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE---ECCCCCC----CCHHHHHHHHHHH
Q ss_conf 08999999986543110123443003674102789999753432102443200---1234334----3178899999998
Q gi|254780276|r 50 TLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV---VIPYYNK----PNRRGLLAHFGEI 122 (292)
Q Consensus 50 ~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v---~~P~~~~----~~~~~i~~~~~~i 122 (292)
T Consensus 81 n~g~e~~l~~i~~~~~~~--~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~~~~iv~~V 158 (325)
T cd04739 81 NLGPEEYLELIRRAKRAV--SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAV 158 (325)
T ss_pred CCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 758999999999987535--987598716899899999999997649987999656678885544210688999999999
Q ss_pred HHHHCCCCEEEECHH
Q ss_conf 753023301210011
Q gi|254780276|r 123 ATTVSSPIYIYNNPS 137 (292)
Q Consensus 123 ~~~~~~pi~iYn~P~ 137 (292)
T Consensus 159 k~~~~~Pv~vKLsP~ 173 (325)
T cd04739 159 KSAVTIPVAVKLSPF 173 (325)
T ss_pred HHCCCCCEEEECCCC
T ss_conf 860788669953998