HHsearch alignment for GI: 254780276 and conserved domain: cd06285
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.39 E-value=1.4 Score=24.88 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654-----3110123443003674102789999753432
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYAH 93 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~ 93 (292)
T Consensus 39 ~~~~~e~~~i~~l~~~~vdGiIi~~~~-----~~~~~~~~l~~~~iPvV~~~~~~~~~---~~v~~dn~~~~~~~~~~Li 110 (265)
T cd06285 39 DNPDAQRRAIEMLLDRRVDGLILGDAR-----SDDHFLDELTRRGVPFVLVLRHAGTS---PAVTGDDVLGGRLATRHLL 110 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-----CCHHHHHHHHHCCCCEEEECCCCCCC---CEEEECHHHHHHHHHHHHH
T ss_conf 998999999999995699999976887-----99899999996799789985568999---9798777999999999999
Q ss_pred HCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 1024432001-23433431788999999987530233
Q gi|254780276|r 94 SIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 94 ~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
T Consensus 111 ~~G~~~i~~l~~~~~~~~~~-~R~~Gf~~a~~~~~~~ 146 (265)
T cd06285 111 DLGHRRIAVLAGPDYASTAR-DRLAGFRAALAEAGIE 146 (265)
T ss_pred HHCCCCEEECCCCCCCCHHH-HHHHHHHHHHHHCCCC
T ss_conf 83886587547887770599-9999999999986999