HHsearch alignment for GI: 254780276 and conserved domain: cd06323
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=93.22 E-value=0.85 Score=26.42 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999999769989998672325010899999998654-----31101234430036741027899997534321
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~ 94 (292)
T Consensus 40 ~~~~e~~~i~~l~~~~vdgiI~~p~~~~~~---~~~i~~~~~~~iPvV~id~~~~~~~~~~~V~~d~~~~g~~a~~~l~~ 116 (268)
T cd06323 40 DAAKQLNDIEDLITRGVDAIIINPTDSDAV---VPAVKAANEAGIPVFTIDREANGGEVVSQIASDNVAGGKMAAEYLVK 116 (268)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCC---HHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 999999999999964999899756542124---69999999769968996366678886618985379999999999999
Q ss_pred C--CCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHH-
Q ss_conf 0--244320012-3433431788999999987530-2330121001111121110689997432030233100122113-
Q gi|254780276|r 95 I--GADALLVVI-PYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIE- 169 (292)
Q Consensus 95 ~--Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~- 169 (292)
T Consensus 117 ~~~~~~~i~~~~g~~~~~~~-~~R~~gf~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lL~~~~~~~aI-~~~nD~~A 193 (268)
T cd06323 117 LLGGKGKVVELQGIPGASAA-RERGKGFHEVVDKYPGLKVVASQPADF-DRAKGLNVMENILQAHPDIKGV-FAQNDEMA 193 (268)
T ss_pred HCCCCCEEEEECCCCCCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCCCCEE-EECCCHHH
T ss_conf 72898269996389998589-999999999998779955887722420-2799999999998629888589-97783999
Q ss_pred --HHHHHHHHCCCCEEECCCCC
Q ss_conf --58999973598403201322
Q gi|254780276|r 170 --LVSEQRLSCGFDFIQLSGED 189 (292)
Q Consensus 170 --~~~~~~~~~~~~~~v~~G~~ 189 (292)
T Consensus 194 ~ga~~al~~~g~~di~v-iGfD 214 (268)
T cd06323 194 LGAIEALKAAGKDDVKV-VGFD 214 (268)
T ss_pred HHHHHHHHHHCCCCEEE-EEEC
T ss_conf 99999999709998299-9888