RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62] (292 letters) >gnl|CDD|29943 cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.. Length = 284 Score = 339 bits (872), Expect = 4e-94 Identities = 141/287 (49%), Positives = 181/287 (63%), Gaps = 3/287 (1%) Query: 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIE 61 F GSI AL+TPF +D DA IE+QI G+ GLV GTTGES TLS EEH +IE Sbjct: 1 FGGSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIE 60 Query: 62 LCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGE 121 V+ V RVPV+AG GSNNT E++EL + A GADA LVV PYYNKP++ GL AHF Sbjct: 61 AVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKA 120 Query: 122 IATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFD 181 IA P+ +YN P RT + ++ +T+ LA +PNIVG+K+ATG ++ VSE C D Sbjct: 121 IAEATDLPVILYNVPGRTGVNIEPETVLRLAE-HPNIVGIKEATGDLDRVSELIALCPDD 179 Query: 182 FIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLH 241 F LSG+D+ L F A GGVG ISV ANV P++ AE +A + GD +A KL+PL Sbjct: 180 FAVLSGDDALTLPFLALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLI 239 Query: 242 QALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL 288 +ALF EP VK AL+ LG +S +R P+V L ++ + AL Sbjct: 240 KALFAEPNPIPVKAALALLGL-ISGELRLPLV-PLSEELRAKLRAAL 284 >gnl|CDD|30677 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 299 Score = 315 bits (809), Expect = 8e-87 Identities = 134/293 (45%), Positives = 183/293 (62%), Gaps = 2/293 (0%) Query: 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII 60 F+G IPAL+TPF + +DE+A +E+ I G GLV GTTGES TL+ EE ++ Sbjct: 4 KFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVL 63 Query: 61 ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG 120 E V+ V RVPV+AG+GSN+T E++ELA++A +GAD +LVV PYYNKP++ GL AHF Sbjct: 64 EAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFK 123 Query: 121 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG- 179 IA V P+ +YN PSRT +++ +T+A LA +PNIVGVKD++G ++ + E + G Sbjct: 124 AIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNIVGVKDSSGDLDRLEEIIAALGD 182 Query: 180 FDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 DFI LSG+D AL G G ISVTANV P + E +A GD +A QD+L+P Sbjct: 183 RDFIVLSGDDELALPALLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLLP 242 Query: 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 L + LF E +K AL LG VR P+V E++ ++ AL LG Sbjct: 243 LIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEEEREKVLEAALAALG 295 >gnl|CDD|144341 pfam00701, DHDPS, Dihydrodipicolinate synthetase family. This family has a TIM barrel structure. Length = 289 Score = 297 bits (762), Expect = 3e-81 Identities = 131/293 (44%), Positives = 180/293 (61%), Gaps = 5/293 (1%) Query: 1 MFRGSIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRI 59 F G I AL+TPF T G +DE+A + IE+ I +G+ GL GTTGES TLS EEH ++ Sbjct: 1 KFEGLITALVTPFDTDGR-LDEEALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQL 59 Query: 60 IELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHF 119 IE+ V R+PV+AG GSN+TRE++ LAQ A + GAD +L V PYYNKP++ GL HF Sbjct: 60 IEITVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHF 119 Query: 120 GEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG 179 IA P+ +YN PSRT ++ +T+ L A PN+VGVKDA G +E + R G Sbjct: 120 KAIAAATDLPVILYNVPSRTGQDLTPETIERL-AECPNVVGVKDAVGDLERMENIRKRAG 178 Query: 180 FDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 DF LSG+D +AL + + G G ISVT+N+ P++ + +A+ GD+ A L +KL+P Sbjct: 179 PDFTILSGDDETALSYLSLGADGVISVTSNIAPKLMRDIYRALKNGDFATAALLNEKLLP 238 Query: 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 L + LF EP VK AL LG +V R P+ L ++ +D L+ LG Sbjct: 239 LMKILFAEPNPIPVKTALQLLGLDVG-PCRLPLT-PLSEEEREELDALLKALG 289 >gnl|CDD|29936 cd00408, DHDPS-like, Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.. Length = 281 Score = 289 bits (740), Expect = 9e-79 Identities = 123/283 (43%), Positives = 175/283 (61%), Gaps = 3/283 (1%) Query: 6 IPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVK 65 IPAL+TPFT +D DA +E+ I G GLV GTTGE+ TL+ EE +IE V+ Sbjct: 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVE 61 Query: 66 TVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT 125 VA RVPV+AG+G+N+TRE++ELA++A GAD +LVV PYYNKP++ G++AHF +A Sbjct: 62 AVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA 121 Query: 126 VSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFDFIQL 185 P+ +YN P RT +++ +T+A LA +PNIVG+KD++G ++ ++ G DF L Sbjct: 122 SDLPVILYNIPGRTGVDLSPETIARLAE-HPNIVGIKDSSGDLDRLTRLIALLGPDFAVL 180 Query: 186 SGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQALF 245 SG+D L A G G IS ANV P++ +A GD +A QD+L+PL +ALF Sbjct: 181 SGDDDLLLPALALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEALF 240 Query: 246 MEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL 288 E VK AL+ LG + VR P+V L ++ ++ L Sbjct: 241 KEGNPAPVKAALALLGLDAG-PVRLPLV-PLSEEERAKLEALL 281 >gnl|CDD|29947 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.. Length = 288 Score = 152 bits (386), Expect = 1e-37 Identities = 84/283 (29%), Positives = 134/283 (47%), Gaps = 4/283 (1%) Query: 3 RGSIPALITPFTKGNLIDEDAFVEHIEWQI-TEGSGGLVPAGTTGESSTLSHEEHCRIIE 61 +G I AL+TPF + I+ED +++ I +G GL G+TGE LS EE +I E Sbjct: 2 KGLIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAE 61 Query: 62 LCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGE 121 + + +V ++A +GS N +ES ELA++A +G DA+ + P+Y K + + ++ E Sbjct: 62 IVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYRE 121 Query: 122 I-ATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF 180 I A S P+ IY+ P+ T + + ++ EL PN++GVK + + R + Sbjct: 122 IIAAAASLPMIIYHIPALTGVNLTLEQFLEL-FEIPNVIGVKFTATDLYDLERIRAASPE 180 Query: 181 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 D + L+G D L A G G I T NV + + +A GD A Q + + Sbjct: 181 DKLVLNGFDEMLLSALALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVINDV 240 Query: 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIA 283 L +K L +G + R P+ EK A Sbjct: 241 ITVLIKNGLYPTLKAILRLMGLDAGP-CRLPLRKVTEKALAKA 282 >gnl|CDD|29944 cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.. Length = 289 Score = 148 bits (375), Expect = 2e-36 Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 12/287 (4%) Query: 10 ITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS 69 +T F DEDA+ H+EW ++ G+ L AG TGE +L+ +E+ +++ V+ A Sbjct: 9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG 68 Query: 70 RVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP 129 RVPV+AG G T ++ AQ A GAD +L++ PY + + GL AH + + Sbjct: 69 RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLG 127 Query: 130 IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFDFIQLSGED 189 + +YN R + D++A LA PN+VG KD G IEL+ G + L G Sbjct: 128 VIVYN---RANAVLTADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLP 184 Query: 190 SSALGFNAHGGVGCI---SVTANVVPRICAEFQQAMIRGDYRQA-LLYQDKLMPLHQALF 245 ++ + A+ +G S N VP I F A+ GD+ L +D +P Sbjct: 185 TAEVFALAYLAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFFLPYVDIRN 244 Query: 246 MEP--AVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALER 290 AV VK +GR+ VR P+ L ++ + + ++ Sbjct: 245 RRKGYAVSIVKAGARLVGRDAG-PVRPPLTD-LTEEELAQLTALIKT 289 >gnl|CDD|29946 cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.. Length = 279 Score = 98.4 bits (245), Expect = 2e-21 Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 10/215 (4%) Query: 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCV 64 I +ITPFT GN ID++ F +H E I++G + AGTTG +LS +E +++ Sbjct: 4 KITPVITPFT-GNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAY- 61 Query: 65 KTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYY-NKPNRRGLLAHFGEIA 123 + +V +GS N ES+ELA+ A S G A+ + PYY L+ +F +I+ Sbjct: 62 SDITDKVIFQ--VGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDIS 119 Query: 124 TTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI-ELVSEQRLSCGFDF 182 + P +IYN P T +++ E+ +I+GVKD I ++ +RL DF Sbjct: 120 SPY--PTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKRL--VPDF 175 Query: 183 IQLSGEDSSALGFNAHGGVGCISVTANVVPRICAE 217 SG DS G G ++ +N +P + + Sbjct: 176 KVYSGPDSLIFSALRSGLDGSVAAASNYLPEVFVK 210 >gnl|CDD|29945 cd00952, CHBPH_aldolase, Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.. Length = 309 Score = 95.0 bits (236), Expect = 2e-20 Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 3/231 (1%) Query: 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAG 76 + +D D +E I G G++ GT GE +TL+ EE + V+TVA RVPV G Sbjct: 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVG 83 Query: 77 IGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNN 135 + NTR+++ + +GAD ++ P + + + + ++A V I IY N Sbjct: 84 ATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143 Query: 136 PSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG-FDFIQLSGEDSSALG 194 P + AEL A P +V K L+S+ G + L + +A Sbjct: 144 PEAFKFDFPRAAWAEL-AQIPQVVAAKYLGDIGALLSDLAAVKGRMRLLPLEDDYYAAAR 202 Query: 195 FNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQALF 245 S A P + A+ GD+ A D++ + LF Sbjct: 203 LFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDARALTDRMRWAAEPLF 253 >gnl|CDD|29940 cd00945, Aldolase_Class_I, Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.. Length = 201 Score = 36.5 bits (84), Expect = 0.008 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 10/118 (8%) Query: 59 IIELCVKTVA-SRVPVMAGIGSNN----TRESVELAQYAHSIGADALLVVIPYYNKP--N 111 + L +A S VPV+ +G T V + A +GAD + VVI + + Sbjct: 36 YVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGD 95 Query: 112 RRGLLAHFGEIATTVSS--PIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGK 167 +L + P+ + ++ A +AA +K +TG Sbjct: 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE-AGADFIKTSTGF 152 >gnl|CDD|73397 cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.. Length = 353 Score = 29.8 bits (67), Expect = 1.0 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 54 EEHCRIIELCVKTVASRVPVMAGIGSNNTRESVE--LAQYAHSIGADALLVVIP 105 +++ I+EL + +A R+P++ +GS NT + L A + L+V P Sbjct: 268 DDNQTIMELVKERIAGRLPLI-AVGSINTPDDALEALETGADLVAIGRGLLVDP 320 >gnl|CDD|88414 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.. Length = 120 Score = 28.6 bits (64), Expect = 2.2 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%) Query: 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPN 111 S NT+E+V A++A GA VI + + Sbjct: 57 SGNTKETVAAAKFAKEKGA----TVIGLTDDED 85 >gnl|CDD|73363 cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.. Length = 217 Score = 28.5 bits (64), Expect = 2.4 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%) Query: 87 ELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVD 146 EL + A +G + L+ V + L E A + + I NN E+D++ Sbjct: 112 ELYELARELGMEVLVEV------HDEEEL-----ERALALGAKIIGINNRDLKTFEVDLN 160 Query: 147 TMAELAATYP 156 T LA P Sbjct: 161 TTERLAPLIP 170 >gnl|CDD|73402 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.. Length = 296 Score = 27.8 bits (62), Expect = 4.2 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 59 IIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAH 118 + EL PV+A I + E VE+A+ GADA+ + I + PN +G Sbjct: 78 LEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNI---SCPNVKGGGMA 134 Query: 119 FGE 121 FG Sbjct: 135 FGT 137 >gnl|CDD|31080 COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]. Length = 517 Score = 27.4 bits (60), Expect = 4.6 Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 16/146 (10%) Query: 64 VKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPY-------YNKPNRRGLL 116 A P+ L +Y D L VI Sbjct: 286 TDIKAVARPITDVTAKKEDPAVEALIEYLQEATEDFLSEVIGTTPGQLEGSRALVADTPE 345 Query: 117 AHFGEIATT------VSSPIYIYNN-PSRTVIEMDVDTMAELAATYP--NIVGVKDATGK 167 + G + + I N RT I T+ ++A YP N + V + TG+ Sbjct: 346 GNLGNLIQDAYTGAAGKADIAFTNGGGIRTDIPAGDITIGDVATVYPFPNTLVVVEVTGE 405 Query: 168 IELVSEQRLSCGFDFIQLSGEDSSAL 193 + + F+Q G S + Sbjct: 406 ELKAILENSAGQGGFLQPGGSLSYSF 431 >gnl|CDD|143975 pfam00218, IGPS, Indole-3-glycerol phosphate synthase. Length = 254 Score = 27.2 bits (61), Expect = 5.1 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Query: 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIE 142 EL +YA S+G + L+ V N L E A + + + NN + E Sbjct: 145 ELLEELYEYARSLGMEPLVEVH------NEEEL-----ERALALGAKLIGVNNRNLKTFE 193 Query: 143 MDVDTMAELAATYP 156 +D++T LA P Sbjct: 194 VDLNTTRRLAPMVP 207 >gnl|CDD|34408 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]. Length = 526 Score = 27.1 bits (60), Expect = 6.6 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 40 VPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99 V GT GE ++ ++ R EL ++ + + G+ LA Y +A Sbjct: 102 VKGGTLGE---MTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNA 158 Query: 100 LLV-VIP 105 VIP Sbjct: 159 RASGVIP 165 >gnl|CDD|88402 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.. Length = 179 Score = 26.7 bits (59), Expect = 6.9 Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 73 VMAGIGSNNTRESVELAQYAHSIGADALLV 102 ++A GS T V A+ A GA +L+ Sbjct: 79 LIAISGSGETSSVVNAAEKAKKAGAKVVLI 108 >gnl|CDD|31958 COG1772, COG1772, Uncharacterized protein conserved in archaea [Function unknown]. Length = 178 Score = 26.4 bits (58), Expect = 8.5 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Query: 107 YNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMA 149 +KP ++G FGE+ T S P + + + +DV A Sbjct: 80 IDKP-KKGFPPQFGEVVATTSKP-----DEKKAIKPIDVAEEA 116 >gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181 Score = 26.7 bits (60), Expect = 8.5 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 14/68 (20%) Query: 102 VVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY-----NNPSRTVIEMD--VDTMAELAAT 154 +V+P YN L + + + S Y Y ++ S D ++ + ELAA Sbjct: 1 IVVPVYN--EEENLPELYERLKAVLESLGYDYEIIFVDDGST-----DRTLEILRELAAR 53 Query: 155 YPNIVGVK 162 P + ++ Sbjct: 54 DPRVKVIR 61 >gnl|CDD|30483 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]. Length = 254 Score = 26.7 bits (59), Expect = 8.7 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%) Query: 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIE 142 + EL AH +G + L+ V N L E A + + I NN T +E Sbjct: 143 EQLEELVDRAHELGMEVLVEV------HNEEEL-----ERALKLGAKIIGINNRDLTTLE 191 Query: 143 MDVDTMAELAATYP 156 +D++T +LA P Sbjct: 192 VDLETTEKLAPLIP 205 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.135 0.392 Gapped Lambda K H 0.267 0.0691 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,386,468 Number of extensions: 173443 Number of successful extensions: 431 Number of sequences better than 10.0: 1 Number of HSP's gapped: 415 Number of HSP's successfully gapped: 28 Length of query: 292 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 199 Effective length of database: 4,254,100 Effective search space: 846565900 Effective search space used: 846565900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.8 bits)