HHsearch alignment for GI: 254780277 and conserved domain: COG0349

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=99.67  E-value=4.4e-16  Score=135.91  Aligned_cols=175  Identities=19%  Similarity=0.157  Sum_probs=139.4

Q ss_pred             ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             47999999999999866852323322243311001244201025776654434550231374433345650017889999
Q gi|254780277|r  371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL  450 (976)
Q Consensus       371 I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl  450 (976)
T Consensus         1 i~~~~~l~~~~~~~~~~~~iAIDTEf~r~~t~~p~LcLIQi~~~e~---------~~lIdp~~~-~~-----------d~   59 (361)
T COG0349           1 ITTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEG---------ASLIDPLAG-IL-----------DL   59 (361)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC---------CEEECCCCC-CC-----------CC
T ss_conf             9742679999997428980798322246643688337999844888---------668622655-46-----------66


Q ss_pred             HHHHHHHCCCCCHHHHCCCCHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             74444202221001100321237889861-88666421002345543168766772466776224442233565432221
Q gi|254780277|r  451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP  529 (976)
Q Consensus       451 ~~L~~lle~~~i~kIgHN~KfD~~~L~~~-GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~  529 (976)
T Consensus        60 ~~l~~Ll~d~~v~KIfHaa~~DL~~l~~~~g~~p~plfdTqiAa~l~g~~~-~~gl~~Lv~~ll~v~ld---K~~q~S-D  134 (361)
T COG0349          60 PPLVALLADPNVVKIFHAARFDLEVLLNLFGLLPTPLFDTQIAAKLAGFGT-SHGLADLVEELLGVELD---KSEQRS-D  134 (361)
T ss_pred             CHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCC---CCCCCC-C
T ss_conf             369998628760255025635199999861888773468999999809863-23299999999688536---444546-5


Q ss_pred             CHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00000-0123333222111112456776322210001345788
Q gi|254780277|r  530 IDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER  571 (976)
Q Consensus       530 ~~~i~-~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~  571 (976)
T Consensus       135 W~~RPLs~~Ql~YAa~DV~yL~~l~~~L~~~L~~~~r~~~a~~  177 (361)
T COG0349         135 WLARPLSEAQLEYAAADVEYLLPLYDKLTEELAREGRLEWAED  177 (361)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             5557999999999999999999999999999987485499999