HHsearch alignment for GI: 254780277 and conserved domain: COG0349
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=99.67 E-value=4.4e-16 Score=135.91 Aligned_cols=175 Identities=19% Similarity=0.157 Sum_probs=139.4
Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 47999999999999866852323322243311001244201025776654434550231374433345650017889999
Q gi|254780277|r 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 (976)
Q Consensus 371 I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl 450 (976)
T Consensus 1 i~~~~~l~~~~~~~~~~~~iAIDTEf~r~~t~~p~LcLIQi~~~e~---------~~lIdp~~~-~~-----------d~ 59 (361)
T COG0349 1 ITTGDLLAAACALLRGSKAIAIDTEFMRLRTYYPRLCLIQISDGEG---------ASLIDPLAG-IL-----------DL 59 (361)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC---------CEEECCCCC-CC-----------CC
T ss_conf 9742679999997428980798322246643688337999844888---------668622655-46-----------66
Q ss_pred HHHHHHHCCCCCHHHHCCCCHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 74444202221001100321237889861-88666421002345543168766772466776224442233565432221
Q gi|254780277|r 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529 (976)
Q Consensus 451 ~~L~~lle~~~i~kIgHN~KfD~~~L~~~-GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~ 529 (976)
T Consensus 60 ~~l~~Ll~d~~v~KIfHaa~~DL~~l~~~~g~~p~plfdTqiAa~l~g~~~-~~gl~~Lv~~ll~v~ld---K~~q~S-D 134 (361)
T COG0349 60 PPLVALLADPNVVKIFHAARFDLEVLLNLFGLLPTPLFDTQIAAKLAGFGT-SHGLADLVEELLGVELD---KSEQRS-D 134 (361)
T ss_pred CHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCC---CCCCCC-C
T ss_conf 369998628760255025635199999861888773468999999809863-23299999999688536---444546-5
Q ss_pred CHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000-0123333222111112456776322210001345788
Q gi|254780277|r 530 IDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 (976)
Q Consensus 530 ~~~i~-~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~ 571 (976)
T Consensus 135 W~~RPLs~~Ql~YAa~DV~yL~~l~~~L~~~L~~~~r~~~a~~ 177 (361)
T COG0349 135 WLARPLSEAQLEYAAADVEYLLPLYDKLTEELAREGRLEWAED 177 (361)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 5557999999999999999999999999999987485499999