HHsearch alignment for GI: 254780277 and conserved domain: COG0847

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair].
Probab=98.06  E-value=3e-05  Score=56.85  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCC----------CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             685232332224331100124420102577665443455023137443----------3345650017889999744442
Q gi|254780277|r  387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH----------TSQDSTGKNTLTKEILSYLKKF  456 (976)
Q Consensus       387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~----------~~~d~~~~~~~~~evl~~L~~l  456 (976)
T Consensus        13 ~~~vv~D~ETtg~~~~~~~iieIgav~~~~~~i~~~~~~~~v~P-~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~   91 (243)
T COG0847          13 TRFVVIDLETTGLNPKKDRIIEIGAVTLEDGRIVERSFHTLVNP-ERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDF   91 (243)
T ss_pred             CCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEECC-CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             75799966148988778854899659967784024311146688-98787543114773889974786389999999998


Q ss_pred             HCCCCCHHHHCCCCHHHHHHHH----CCCCCCC--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             0222100110032123788986----1886664--210023455431687667724667762244422335654322210
Q gi|254780277|r  457 FENEHFLKIGHNIKYDKLVLHR----YGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI  530 (976)
Q Consensus       457 le~~~i~kIgHN~KfD~~~L~~----~GI~l~~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~  530 (976)
T Consensus        92 i~~~-~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~~-~gi~~~-~----------  158 (243)
T COG0847          92 IGGL-RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAER-LGIDRN-P----------  158 (243)
T ss_pred             HCCC-CEEEEEEHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-CCCCCC-C----------
T ss_conf             4788-86999505308899998999708987576420079999987699761348999996-298877-7----------


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00000123333222111112456776322
Q gi|254780277|r  531 DKISDSQVQEHAIENSNVILQLWLLLRPK  559 (976)
Q Consensus       531 ~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~  559 (976)
T Consensus       159 ------~~~H~Al~Da~~~a~~~~~~~~~  181 (243)
T COG0847         159 ------FHPHRALFDALALAELFLLLQTG  181 (243)
T ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ------77661678899999999998620