HHsearch alignment for GI: 254780277 and conserved domain: COG0847
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair].
Probab=98.06 E-value=3e-05 Score=56.85 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCC----------CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 685232332224331100124420102577665443455023137443----------3345650017889999744442
Q gi|254780277|r 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH----------TSQDSTGKNTLTKEILSYLKKF 456 (976)
Q Consensus 387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~----------~~~d~~~~~~~~~evl~~L~~l 456 (976)
T Consensus 13 ~~~vv~D~ETtg~~~~~~~iieIgav~~~~~~i~~~~~~~~v~P-~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~ 91 (243)
T COG0847 13 TRFVVIDLETTGLNPKKDRIIEIGAVTLEDGRIVERSFHTLVNP-ERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDF 91 (243)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEECC-CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 75799966148988778854899659967784024311146688-98787543114773889974786389999999998
Q ss_pred HCCCCCHHHHCCCCHHHHHHHH----CCCCCCC--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 0222100110032123788986----1886664--210023455431687667724667762244422335654322210
Q gi|254780277|r 457 FENEHFLKIGHNIKYDKLVLHR----YGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530 (976)
Q Consensus 457 le~~~i~kIgHN~KfD~~~L~~----~GI~l~~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~ 530 (976)
T Consensus 92 i~~~-~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~~-~gi~~~-~---------- 158 (243)
T COG0847 92 IGGL-RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAER-LGIDRN-P---------- 158 (243)
T ss_pred HCCC-CEEEEEEHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-CCCCCC-C----------
T ss_conf 4788-86999505308899998999708987576420079999987699761348999996-298877-7----------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000123333222111112456776322
Q gi|254780277|r 531 DKISDSQVQEHAIENSNVILQLWLLLRPK 559 (976)
Q Consensus 531 ~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~ 559 (976)
T Consensus 159 ------~~~H~Al~Da~~~a~~~~~~~~~ 181 (243)
T COG0847 159 ------FHPHRALFDALALAELFLLLQTG 181 (243)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ------77661678899999999998620