HHsearch alignment for GI: 254780277 and conserved domain: COG2176
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=99.02 E-value=3.5e-10 Score=92.81 Aligned_cols=139 Identities=19% Similarity=0.314 Sum_probs=96.2
Q ss_pred CCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCC----C------
Q ss_conf 665035479999999999998668523233222433110012442010257766544345502313744----3------
Q gi|254780277|r 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV----H------ 434 (976)
Q Consensus 365 ~~~y~~I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~----~------ 434 (976)
T Consensus 404 dD~vpiv~N~~-----d~~l~datyVVfDiETTGLs~~~d~iIE~aAvKikng~iI--d~f~~Fi~P~~pl~~~~telTg 476 (1444)
T COG2176 404 DDGVPIVYNPD-----DQKLDDATYVVFDIETTGLSPVYDEIIEIAAVKIKNGRII--DKFQFFIKPGRPLSATITELTG 476 (1444)
T ss_pred CCCCCEECCCC-----CCCCCCCCEEEEEEECCCCCCCCCHHHHHEEEEEECCCCH--HHHHHHCCCCCCCCHHHHHCCC
T ss_conf 57884230754-----4545655089998553776754201562000443388043--7789750899967644542035
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHH----HCCCC-CC-CCCCHHHHHHHHCCCCCCCCHHHH
Q ss_conf 3345650017889999744442022210011003212378898----61886-66-421002345543168766772466
Q gi|254780277|r 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS-MR-GFEDIMLMSYVLDSGRSSHDIASI 508 (976)
Q Consensus 435 ~~~d~~~~~~~~~evl~~L~~lle~~~i~kIgHN~KfD~~~L~----~~GI~-l~-~i~DTmlaayLLdp~~~~~~L~~l 508 (976)
T Consensus 477 ITdeml~~a~~i~~vL~kf~~~~~d~--IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l 554 (1444)
T COG2176 477 ITDEMLENAPEIEEVLEKFREFIGDS--ILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTL 554 (1444)
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHCCHHHH
T ss_conf 67998748833999999999984485--8996167556457888899838851027501199999875745432466778
Q ss_pred HHHH
Q ss_conf 7762
Q gi|254780277|r 509 AQKW 512 (976)
Q Consensus 509 a~~y 512 (976)
T Consensus 555 ~kk~ 558 (1444)
T COG2176 555 CKKL 558 (1444)
T ss_pred HHHH
T ss_conf 8874