HHsearch alignment for GI: 254780277 and conserved domain: COG3359
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair].
Probab=96.33 E-value=0.018 Score=36.62 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-HHHH
Q ss_conf 852323322243311001244201025776654434550231374433345650017889999744442022210-0110
Q gi|254780277|r 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF-LKIG 466 (976)
Q Consensus 388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle~~~i-~kIg 466 (976)
T Consensus 99 ~~~FFDiETTGL~~ag~~I~~~g~a~~~~~--------~~~Vrq~~lp~p~--------~E-~avle~fl~~~~~~~lvs 161 (278)
T COG3359 99 DVAFFDIETTGLDRAGNTITLVGGARGVDD--------TMHVRQHFLPAPE--------EE-VAVLENFLHDPDFNMLVS 161 (278)
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEECCCC--------EEEEEEECCCCCC--------HH-HHHHHHHHCCCCCCEEEE
T ss_conf 258996331466888985999988873575--------6999751279841--------35-689999753898455997
Q ss_pred CCC-CHHHHHHH---HCCCCC--CC-CCCHHHHHHHHCCCC-CCCCHHHHHHHHCCCCCCC-CCCCCCCCC------CCH
Q ss_conf 032-12378898---618866--64-210023455431687-6677246677622444223-356543222------100
Q gi|254780277|r 467 HNI-KYDKLVLH---RYGISM--RG-FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKE-ILKSRKSSI------PID 531 (976)
Q Consensus 467 HN~-KfD~~~L~---~~GI~l--~~-i~DTmlaayLLdp~~-~~~~L~~la~~yL~~~~~e-~~~~~k~~~------~~~ 531 (976)
T Consensus 162 fNGkaFD~PfikR~v~~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr-~LGi~R~edtdG~~~p~lyr~~~~~~d 240 (278)
T COG3359 162 FNGKAFDIPFIKRMVRDRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVER-ILGIRREEDTDGYDGPELYRLYRRYGD 240 (278)
T ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH-HHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 4683267089999875164447666631221034453120287888136788-857550115898501999999987098
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000123333222111112456776322210
Q gi|254780277|r 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 (976)
Q Consensus 532 ~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~ 562 (976)
T Consensus 241 p~ll~~l~~hN~eDvlnL~~i~~h~~~~i~~ 271 (278)
T COG3359 241 PGLLDGLVLHNREDVLNLPTIIKHVSKKILE 271 (278)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7777898870699887599999999999998