HHsearch alignment for GI: 254780277 and conserved domain: PRK00116

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=94.01  E-value=0.17  Score=29.46  Aligned_cols=131  Identities=21%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             CCCEEEECCCCHHHEE--CCCCEEEEEC--CCCCEECHHHHHHHHCCCHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9949998687012122--3797599966--78835389999888489887-87777875187435899877636024998
Q gi|254780277|r  132 GFAVTIISTDKDLMQL--VSPTTCLYDT--VKEEKIDIEHVIKKWGIPPE-KMVCLQALTGDSIDNIPGIPGIGYKTAAL  206 (976)
Q Consensus       132 ~~~v~i~s~DkD~~Ql--v~~~v~~~~~--~~~~~~~~~~v~~~~gv~p~-~~~d~~al~GD~sDnipGv~GiG~KtA~~  206 (976)
T Consensus        23 GvGY~v~v~~~~~~~l~~~g~~~~l~~~~~vrEd~------~~LyGF~~~~Er~~F~~Li--------~V~GIGpK~AL~   88 (198)
T PRK00116         23 GVGYEVQVPMRTLYELPEVGEEVKLYTHLVVREDA------QLLYGFLTKEERELFRLLI--------SVSGVGPKLALA   88 (198)
T ss_pred             CEEEEEEECHHHHHHCCCCCCEEEEEEEEEEECCC------CEEEEECCHHHHHHHHHHH--------CCCCCCHHHHHH
T ss_conf             98899991689998624689839999999980688------7578408889999999985--------668857899998


Q ss_pred             HHHHCCCHHHHHHHHH--------HHH--HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHH
Q ss_conf             9841367899986454--------200--112232200357899976554320356422476355212676768899865
Q gi|254780277|r  207 LLQEYGNLENILINAS--------RIK--QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL  276 (976)
Q Consensus       207 ll~~~gsle~i~~~~d--------~i~--~~k~~~~l~~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~~  276 (976)
T Consensus        89 ILs~~~-~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi-----~ELk~K~~~~~~~~~~~~~--~~~~~~~~~~d~~~AL  160 (198)
T PRK00116         89 ILSGLS-PEELAQAIANGDIKALTKVPGVGKKTAERIV-----LELKDKLAALADAGAAAAA--AASAANDALEEAVSAL  160 (198)
T ss_pred             HHCCCC-HHHHHHHHHHCCHHHHCCCCCCCHHHHHHHH-----HHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHH
T ss_conf             870299-9999999985899997068897889999999-----9999888742124554545--6677752599999999


Q ss_pred             HHHHHHHH
Q ss_conf             32336899
Q gi|254780277|r  277 KALEFTKL  284 (976)
Q Consensus       277 ~~lef~~l  284 (976)
T Consensus       161 ~~LGy~~~  168 (198)
T PRK00116        161 VALGYKPK  168 (198)
T ss_pred             HHCCCCHH
T ss_conf             98599999