HHsearch alignment for GI: 254780277 and conserved domain: PRK00116
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=94.01 E-value=0.17 Score=29.46 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCCEEEECCCCHHHEE--CCCCEEEEEC--CCCCEECHHHHHHHHCCCHH-HHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9949998687012122--3797599966--78835389999888489887-87777875187435899877636024998
Q gi|254780277|r 132 GFAVTIISTDKDLMQL--VSPTTCLYDT--VKEEKIDIEHVIKKWGIPPE-KMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 (976)
Q Consensus 132 ~~~v~i~s~DkD~~Ql--v~~~v~~~~~--~~~~~~~~~~v~~~~gv~p~-~~~d~~al~GD~sDnipGv~GiG~KtA~~ 206 (976)
T Consensus 23 GvGY~v~v~~~~~~~l~~~g~~~~l~~~~~vrEd~------~~LyGF~~~~Er~~F~~Li--------~V~GIGpK~AL~ 88 (198)
T PRK00116 23 GVGYEVQVPMRTLYELPEVGEEVKLYTHLVVREDA------QLLYGFLTKEERELFRLLI--------SVSGVGPKLALA 88 (198)
T ss_pred CEEEEEEECHHHHHHCCCCCCEEEEEEEEEEECCC------CEEEEECCHHHHHHHHHHH--------CCCCCCHHHHHH
T ss_conf 98899991689998624689839999999980688------7578408889999999985--------668857899998
Q ss_pred HHHHCCCHHHHHHHHH--------HHH--HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHH
Q ss_conf 9841367899986454--------200--112232200357899976554320356422476355212676768899865
Q gi|254780277|r 207 LLQEYGNLENILINAS--------RIK--QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 (976)
Q Consensus 207 ll~~~gsle~i~~~~d--------~i~--~~k~~~~l~~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~~ 276 (976)
T Consensus 89 ILs~~~-~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi-----~ELk~K~~~~~~~~~~~~~--~~~~~~~~~~d~~~AL 160 (198)
T PRK00116 89 ILSGLS-PEELAQAIANGDIKALTKVPGVGKKTAERIV-----LELKDKLAALADAGAAAAA--AASAANDALEEAVSAL 160 (198)
T ss_pred HHCCCC-HHHHHHHHHHCCHHHHCCCCCCCHHHHHHHH-----HHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHH
T ss_conf 870299-9999999985899997068897889999999-----9999888742124554545--6677752599999999
Q ss_pred HHHHHHHH
Q ss_conf 32336899
Q gi|254780277|r 277 KALEFTKL 284 (976)
Q Consensus 277 ~~lef~~l 284 (976)
T Consensus 161 ~~LGy~~~ 168 (198)
T PRK00116 161 VALGYKPK 168 (198)
T ss_pred HHCCCCHH
T ss_conf 98599999