HHsearch alignment for GI: 254780277 and conserved domain: PRK05711
>PRK05711 DNA polymerase III subunit epsilon; Provisional.
Probab=98.83 E-value=8.8e-09 Score=82.63 Aligned_cols=148 Identities=12% Similarity=0.213 Sum_probs=91.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCEECCCCCCC----------CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8523233222433110-01244201025776654434550231374433----------345650017889999744442
Q gi|254780277|r 388 GSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFIDLSVHT----------SQDSTGKNTLTKEILSYLKKF 456 (976)
Q Consensus 388 ~~ia~DtETt~ld~~~-~~ivGisls~~~~~~~~~~~~~~~yip~~~~~----------~~d~~~~~~~~~evl~~L~~l 456 (976)
T Consensus 5 R~VvlDtETTGl~~~~gdRIIEIgav~~~~~~~t~~~-f~~~inP~r~i~~~a~~IhGIT~e~L~~~P~F~ei~~efl~F 83 (240)
T PRK05711 5 RQIVLDTETTGLNQREGHRIIEIGAVELINRRLTGRN-FHVYIKPDRDVDPEALAVHGITDEFLADKPTFAEVADEFLDF 83 (240)
T ss_pred CEEEEEEECCCCCCCCCCEEEEEEEEEEECCEECCCE-EEEEECCCCCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 2899986689969999987899999999999881435-789989689599778754086889964587599999999998
Q ss_pred HCCCCCHHHHCCCCHHHHHHH----HCCCCC---C---CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 022210011003212378898----618866---6---421002345543168766772466776224442233565432
Q gi|254780277|r 457 FENEHFLKIGHNIKYDKLVLH----RYGISM---R---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526 (976)
Q Consensus 457 le~~~i~kIgHN~KfD~~~L~----~~GI~l---~---~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~ 526 (976)
T Consensus 84 i~~s~l--VaHNa~FD~~FLn~El~r~g~~~~~~~~~~~viDTL~lAR~~~Pg~-~~sLdaLc~r~~-I~~s-------- 151 (240)
T PRK05711 84 IRGAEL--IIHNAPFDIGFMDYEFALLGRDIPKTTTFCKVTDTLAMARRMFPGK-RNSLDALCKRYG-IDNS-------- 151 (240)
T ss_pred HCCCEE--EEECCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCC-CCCHHHHHHHCC-CCCC--------
T ss_conf 189979--9966199899999999986899876445212101999999878999-889999999809-8988--------
Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2210000001233332221111124567763
Q gi|254780277|r 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 (976)
Q Consensus 527 ~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~ 557 (976)
T Consensus 152 ---------~R~~HgAL~Da~llA~Vyl~l~ 173 (240)
T PRK05711 152 ---------HRTLHGALLDAEILAEVYLAMT 173 (240)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---------7565764888999999999971