HHsearch alignment for GI: 254780277 and conserved domain: PRK05755
>PRK05755 DNA polymerase I; Provisional.
Probab=100.00 E-value=0 Score=2301.87 Aligned_cols=885 Identities=47% Similarity=0.780 Sum_probs=851.0
Q ss_pred CCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCHHH
Q ss_conf 98897289996626999887426754468988550069999999999999848554798799997274887132408652
Q gi|254780277|r 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDY 80 (976)
Q Consensus 1 m~~~~~~~liDg~~~~~ra~~a~p~~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~~Y 80 (976)
T Consensus 1 m~~k~~l~liDg~~~~~Ra~~a~~~l~-~~~G~~tnai~Gf~~~l~~~~~~~~p~----~~~v~fD~~~~tfR~~~y~~Y 75 (889)
T PRK05755 1 MIKKKTLLLVDGSSLAFRAFYALPPLT-NSDGLPTGAVYGFLNMLLKLLKDEKPT----HIAVAFDAKGKTFRHELYPEY 75 (889)
T ss_pred CCCCCCEEEEECCHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCC----EEEEEECCCCCCCCCCCCHHH
T ss_conf 998894899958589999980789887-999987252999999999999862998----899996398996352105564
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHEECCCCEEEEECCCC
Q ss_conf 16679879758864899999999709979956890166589999999984899499986870121223797599966788
Q gi|254780277|r 81 KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160 (976)
Q Consensus 81 Ka~R~~~p~~l~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~DkD~~Qlv~~~v~~~~~~~~ 160 (976)
T Consensus 76 Ka~R~~~P~~l~~Q~~~i~~~l~~~gi~~~~~~g~EADDii~tla~~~~~~~~~v~i~s~DkD~~QLv~~~v~~~~~~k~ 155 (889)
T PRK05755 76 KANRPPMPEDLREQIPLLREALEALGIPLLEVEGYEADDVIGTLAKQAEAAGFEVLIVTGDKDLLQLVDDNVTVLNTMKN 155 (889)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCEEEEECCCC
T ss_conf 27999999899999999999999879988646892399999999999997799599980898785618898699989999
Q ss_pred CEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 35389999888489887877778751874358998776360249989841367899986454200112232200357899
Q gi|254780277|r 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 (976)
Q Consensus 161 ~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i~~~~d~i~~~k~~~~l~~~~e~a 240 (976)
T Consensus 156 ~~~~~~~v~ek~Gv~P~q~~D~~aL~GD~sDNIPGVpGIG~KtA~kLl~~ygsle~i~~~~d~i~g~k~~~~l~~~~e~a 235 (889)
T PRK05755 156 ERIDPEGVIEKYGVTPEQIIDFLALMGDSSDNIPGVPGVGEKTAAKLLKEFGSLEGLYENLDEIKGKKLKEKLRENKEQA 235 (889)
T ss_pred CEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 28589999999796989999999980886457899886269999999986786899999898523256788898469999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97655432035642247635521267676889986532336899987653114454433421112343322223332222
Q gi|254780277|r 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI 320 (976)
Q Consensus 241 ~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~~~~lef~~ll~rL~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (976)
T Consensus 236 ~ls~~L~ti~~dvpl~~~le~l~~~~~d~~~l~~lf~elEFksLlkrl~~~~~~~~~----------------------- 292 (889)
T PRK05755 236 FLSRKLATIKTDVPLDVDLEDLELKPPDREKLIALLKKLEFKSLLRRVEAGAAEAEA----------------------- 292 (889)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCC-----------------------
T ss_conf 999998565228989999999225899999999999982859999998521266677-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 22233332222233332112232112001121100001235556665035479999999999998668523233222433
Q gi|254780277|r 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400 (976)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~~~~~~~~~~~~~y~~I~~~~~L~~li~~L~~~~~ia~DtETt~ld 400 (976)
T Consensus 293 ----------------------------------------~~~~~~~~~~I~~~~el~~ll~~l~~~~~va~dtEttsld 332 (889)
T PRK05755 293 ----------------------------------------AVIDEIEYETILDEEELEAWLAKLKKAGLVAFDTETTSLD 332 (889)
T ss_pred ----------------------------------------CCCCCCCCEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf ----------------------------------------8777788566189999999999865288499998417887
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHCC
Q ss_conf 11001244201025776654434550231374433345650017889999744442022210011003212378898618
Q gi|254780277|r 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 (976)
Q Consensus 401 ~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle~~~i~kIgHN~KfD~~~L~~~G 480 (976)
T Consensus 333 ~~~a~lVGis~s~~~g~--------a~YIPl~~~-------~~~~~~~vl~~Lk~lLed~~i~KIghNlK~dl~vL~~~G 397 (889)
T PRK05755 333 PMSANLVGLSFAVEEGE--------AAYIPLAHD-------DQLDRDDALAALKPLLEDPAIPKVGQNLKYDRHILANYG 397 (889)
T ss_pred CCCCCEEEEEEECCCCC--------EEEEECCCC-------CCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCC
T ss_conf 56576259999827996--------899844431-------336889999999999709887243203189999999779
Q ss_pred CCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCC---CCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86664-21002345543168766772466776224442---233565432221000000123333222111112456776
Q gi|254780277|r 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 481 I~l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~---~e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 398 I~l~g~~fDTmLAaYLLdP~~~~~~Ld~La~~yL~~~~~~~eel~gkg-~~~~~~~v~~e~~~~YaaedA~~~~~L~~~L 476 (889)
T PRK05755 398 IELRGIAFDTMLASYLLDPGAGRHDLDSLAERYLGHKTISFEEVAGKG-NQLTFAQVALEEAAEYAAEDADVTLRLHQVL 476 (889)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 235776301999998747887767789999986323442034313656-5566100787899999999886899999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32221000134578860750123322101431005899998643436899999999974034557777656667998742
Q gi|254780277|r 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 (976)
Q Consensus 557 ~~~L~~~~l~~l~~~iE~Pl~~vLa~ME~~Gi~vD~~~L~~l~~~l~~~l~~le~~i~~~aG~~FNinSpkQL~~vLf~~ 636 (976)
T Consensus 477 ~~~L~~~~l~~Ly~~IE~PLi~VLa~ME~~GI~VD~~~L~~ls~el~~~l~~le~~I~~~aG~eFNinSPKQL~~iLFek 556 (889)
T PRK05755 477 KPELEEEGLLELYEEIELPLVPVLARMERNGIKVDREYLEELSAELAQRLAELEQEIYELAGEEFNLNSPKQLGEILFEK 556 (889)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998604788999987519999999996086866999999999999999999999998749903779989999999985
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 07887555665453531788776530476279999999878889886532001111001233345330022210000013
Q gi|254780277|r 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 (976)
Q Consensus 637 LgLp~~kKTktG~~ST~~~~Le~L~~~~hp~~~~iLeyR~l~KL~sTY~~~l~~~i~~~dgRIH~~f~q~~t~TGRlSs~ 716 (976)
T Consensus 557 L~Lp~~KKTKtG-ySTd~~vLe~L~-~~hpi~~~iLeyR~l~KL~sTYvd~L~~~i~~~tgRIHt~f~Q~~t~TGRLSS~ 634 (889)
T PRK05755 557 LGLPVTKKTKTG-YSTDAEVLEKLA-DDHPIPKKILEYRQLSKLKSTYTDGLPKMINPDTGRVHTSFNQAVTATGRLSSS 634 (889)
T ss_pred CCCCCCCCCCCC-CCCCHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCCCCCCC
T ss_conf 399978878898-878599999987-507699999999778788888988887524788984611001110320222479
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHH
Q ss_conf 33433345563322224302424899489996326544368766510377787340698889999989809996889988
Q gi|254780277|r 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 (976)
Q Consensus 717 ~PNlQNiP~r~~~g~~iR~~F~a~~g~~lv~aDySQiElRilA~ls~D~~l~~af~~g~DiH~~tA~~vf~~~~~~vt~~ 796 (976)
T Consensus 635 ~PNLQNIPir~e~Gr~IR~aFva~~g~~l~saDYSQIELRilAh~S~D~~li~af~~g~DiH~~tA~~vf~v~~~~vt~~ 714 (889)
T PRK05755 635 DPNLQNIPIRTEEGRRIRQAFVAPEGYKLLSADYSQIELRILAHLSGDEGLIEAFAEGEDIHTATASEVFGVPLEEVTSE 714 (889)
T ss_pred CCCCCCCCCCCHHHHHHHHEEEECCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHH
T ss_conf 98534687763230445522785899889995120899999999808999999985599868999999939990018999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEECCCCCEECCCCCCCCC
Q ss_conf 88630251356440777035678819998999999999999888899999999999998498882778760189875883
Q gi|254780277|r 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 (976)
Q Consensus 797 ~R~~aK~infgi~YG~~~~~La~~l~is~~eA~~~i~~yf~~~p~v~~~~~~~~~~a~~~gyv~T~~GRrr~~p~i~s~~ 876 (976)
T Consensus 715 ~R~~AK~vnfGiiYG~s~~gLs~~l~is~~eA~~~i~~yf~~yp~v~~~~~~~~~~a~~~Gyv~Tl~gRrr~~p~i~s~n 794 (889)
T PRK05755 715 QRRRAKAINFGLIYGMSAFGLARQLGISRKEAKEYIDRYFERYPGVKEYMEETVAQAKEKGYVETLFGRRRYLPDINSSN 794 (889)
T ss_pred HHHHHHHEEEHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCCCC
T ss_conf 98662613221444668778998819999999999999999681099999999999997797778778705278677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78887787877013456538999999999999999865998189997263899955987999999999999651013574
Q gi|254780277|r 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 (976)
Q Consensus 877 ~~~r~~aeR~a~N~~iQGsaAdi~k~am~~i~~~~~~~~~~~~~ilqVHDElv~ev~~~~~~~~~~~~~~~Me~~~~~~~ 956 (976)
T Consensus 795 ~~~r~~~eR~AiN~pIQGsAADiiK~AMi~v~~~l~-~~~~~~~llQVHDEli~Ev~~~~~e~~~~~v~~~Me~a~---- 869 (889)
T PRK05755 795 GARRAFAERAAINAPIQGSAADIIKIAMIRVDDALK-EGLKARMLLQVHDELVFEVPEDELEEVKKLVKEVMENAV---- 869 (889)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCE----
T ss_conf 889989999996756555699999999999999998-477873899865577784278899999999999971850----
Q ss_pred CCCCCEEEEEEEECCHHHHC
Q ss_conf 44464388833208937819
Q gi|254780277|r 957 NLRVPLKVNIKVSNNWQEEN 976 (976)
Q Consensus 957 ~l~VPl~v~~~~G~~W~e~~ 976 (976)
T Consensus 870 ~l~VPl~v~~~~g~nW~eaK 889 (889)
T PRK05755 870 ELSVPLVVDVGVGDNWDEAK 889 (889)
T ss_pred ECCCCEEEECCCCCCHHHCC
T ss_conf 07887586238168967729