HHsearch alignment for GI: 254780277 and conserved domain: PRK05762

>PRK05762 DNA polymerase II; Reviewed.
Probab=97.67  E-value=0.00012  Score=52.39  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=83.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCHH
Q ss_conf             685232332224331100124420102577665443455023137443334565001788999974444202--221001
Q gi|254780277|r  387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE--NEHFLK  464 (976)
Q Consensus       387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle--~~~i~k  464 (976)
T Consensus       155 lrvlSfDIEc~~~g----~ii~I~l~~~~~~~v--------~~~g~-~~~~~~v~~~~~E~eLL~~F~~~i~~~DPDII-  220 (785)
T PRK05762        155 LKVVSLDIETSNKG----ELYSIGLEGCGQRQV--------YMLGE-ANGDAELEYVADEKALLERFNAWFAEFDPDVI-  220 (785)
T ss_pred             CEEEEEEEEECCCC----CEEEEEECCCCCCEE--------EEECC-CCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE-
T ss_conf             86999998977999----889999517998468--------99668-89985389909999999999999998599989-


Q ss_pred             HHCCC-CHHHHHHHH----CCCCC-------------------------CC--CCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             10032-123788986----18866-------------------------64--210023455431687667724667762
Q gi|254780277|r  465 IGHNI-KYDKLVLHR----YGISM-------------------------RG--FEDIMLMSYVLDSGRSSHDIASIAQKW  512 (976)
Q Consensus       465 IgHN~-KfD~~~L~~----~GI~l-------------------------~~--i~DTmlaayLLdp~~~~~~L~~la~~y  512 (976)
T Consensus       221 ~GyNi~~FDlpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~sYsL~~Va~~~  300 (785)
T PRK05762        221 IGWNVVQFDLRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKSFSLENVAQEL  300 (785)
T ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             96274787779999999994998546878886533315655660599984289997099998752036766299999998


Q ss_pred             CCCCCCCCCCCC-CCCC-CCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             244422335654-3222-1000000123333222111112456776
Q gi|254780277|r  513 LSYTRKEILKSR-KSSI-PIDKISDSQVQEHAIENSNVILQLWLLL  556 (976)
Q Consensus       513 L~~~~~e~~~~~-k~~~-~~~~i~~e~~~~Yaa~Da~~t~~L~~~l  556 (976)
T Consensus       301 Lge~K~~~~~~~r~~eI~~~~~~~r~~l~~Y~l~Da~L~~~L~~kl  346 (785)
T PRK05762        301 LGEGKAIDNPYDRMDEIDRYFADDKPALAKYNLKDCELVTRIFEKT  346 (785)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5445555666666888899885468999999999999999999987