HHsearch alignment for GI: 254780277 and conserved domain: PRK05762
>PRK05762 DNA polymerase II; Reviewed.
Probab=97.67 E-value=0.00012 Score=52.39 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCHH
Q ss_conf 685232332224331100124420102577665443455023137443334565001788999974444202--221001
Q gi|254780277|r 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE--NEHFLK 464 (976)
Q Consensus 387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle--~~~i~k 464 (976)
T Consensus 155 lrvlSfDIEc~~~g----~ii~I~l~~~~~~~v--------~~~g~-~~~~~~v~~~~~E~eLL~~F~~~i~~~DPDII- 220 (785)
T PRK05762 155 LKVVSLDIETSNKG----ELYSIGLEGCGQRQV--------YMLGE-ANGDAELEYVADEKALLERFNAWFAEFDPDVI- 220 (785)
T ss_pred CEEEEEEEEECCCC----CEEEEEECCCCCCEE--------EEECC-CCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE-
T ss_conf 86999998977999----889999517998468--------99668-89985389909999999999999998599989-
Q ss_pred HHCCC-CHHHHHHHH----CCCCC-------------------------CC--CCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 10032-123788986----18866-------------------------64--210023455431687667724667762
Q gi|254780277|r 465 IGHNI-KYDKLVLHR----YGISM-------------------------RG--FEDIMLMSYVLDSGRSSHDIASIAQKW 512 (976)
Q Consensus 465 IgHN~-KfD~~~L~~----~GI~l-------------------------~~--i~DTmlaayLLdp~~~~~~L~~la~~y 512 (976)
T Consensus 221 ~GyNi~~FDlpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~sYsL~~Va~~~ 300 (785)
T PRK05762 221 IGWNVVQFDLRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKSFSLENVAQEL 300 (785)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 96274787779999999994998546878886533315655660599984289997099998752036766299999998
Q ss_pred CCCCCCCCCCCC-CCCC-CCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 244422335654-3222-1000000123333222111112456776
Q gi|254780277|r 513 LSYTRKEILKSR-KSSI-PIDKISDSQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 513 L~~~~~e~~~~~-k~~~-~~~~i~~e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 301 Lge~K~~~~~~~r~~eI~~~~~~~r~~l~~Y~l~Da~L~~~L~~kl 346 (785)
T PRK05762 301 LGEGKAIDNPYDRMDEIDRYFADDKPALAKYNLKDCELVTRIFEKT 346 (785)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5445555666666888899885468999999999999999999987