HHsearch alignment for GI: 254780277 and conserved domain: PRK06309
>PRK06309 DNA polymerase III subunit epsilon; Validated.
Probab=99.18 E-value=9.1e-11 Score=97.13 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCEECCCC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 852323322243311001244201025776654434-550231374----433345650017889999744442022210
Q gi|254780277|r 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK-VETIFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFENEHF 462 (976)
Q Consensus 388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~-~~~~yip~~----~~~~~d~~~~~~~~~evl~~L~~lle~~~i 462 (976)
T Consensus 3 ~~V~fD~ETTGl~~~~DrIIEiaav~~~~~e~f~~linP~~pIp~~a~~ihGIt~e~v~~~P~~~ev~~~~~~f~~~~~- 81 (232)
T PRK06309 3 ALIFYDTETTGTQIDKDRIIEIAAYNGVTSESFQTYVNPEIPIPAEATKIHGITTSEVASAPKFPEAYQKFREFCGTDN- 81 (232)
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCC-
T ss_conf 6899971179959999458999989275676899997998969965621038399998059989999999999857998-
Q ss_pred HHHHCCC-CHHHHHHH----HCCCCCCC--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 0110032-12378898----61886664--21002345543168766772466776224442233565432221000000
Q gi|254780277|r 463 LKIGHNI-KYDKLVLH----RYGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 (976)
Q Consensus 463 ~kIgHN~-KfD~~~L~----~~GI~l~~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i~~ 535 (976)
T Consensus 82 ilVaHN~~~FD~~fL~~e~~r~g~~~~~~~~iDTl~lar~l~P~l~~h~L~~L~~~~-gi~~~----------------- 143 (232)
T PRK06309 82 ILVAHNNDGFDFPLLVKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVY-GFAEN----------------- 143 (232)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH-CCCCC-----------------
T ss_conf 899848965679999999998599867740537999999975897768899999980-99998-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1233332221111124567763222100013457886075
Q gi|254780277|r 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 (976)
Q Consensus 536 e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~iE~P 575 (976)
T Consensus 144 --~aHrAl~Da~at~~vf~~ll~~~~~~~~~~l~~~~~~~ 181 (232)
T PRK06309 144 --QAHRALDDVITLHRVFSALVGDLSPQQVLDLLNESCHP 181 (232)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf --88885999999999999987216999999998450655