HHsearch alignment for GI: 254780277 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.97 E-value=2e-09 Score=87.34 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=106.3
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC----CCEECCCCCCCCC---CCCCCCC-CHHHHHHHHHHHH
Q ss_conf 68523233222433110-012442010257766544345----5023137443334---5650017-8899997444420
Q gi|254780277|r 387 IGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKV----ETIFIDLSVHTSQ---DSTGKNT-LTKEILSYLKKFF 457 (976)
Q Consensus 387 ~~~ia~DtETt~ld~~~-~~ivGisls~~~~~~~~~~~~----~~~yip~~~~~~~---d~~~~~~-~~~evl~~L~~ll 457 (976)
T Consensus 3 ~~~~vvDlETTG~~~~~~d~IIqig~v~i~~~~i~~~f~t~vnP~~~iP~~I~~LTgI~~~~v~~AP~f~eva~~i~~~l 82 (932)
T PRK08074 3 KRFVVVDLETTGNSPKKGDKIIQIAAVVVEDGEILERFSTFVNPERPIPPFITELTGISEEMVKNAPLFEDVAPMIVELL 82 (932)
T ss_pred CEEEEEEEECCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 70899998888989777988999979999999998998532589998997788606989899805999899999999996
Q ss_pred CCCCCHHHHCCCCHHHHHHHH----CCCC-CCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 222100110032123788986----1886-664-2100234554316876677246677622444223356543222100
Q gi|254780277|r 458 ENEHFLKIGHNIKYDKLVLHR----YGIS-MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 (976)
Q Consensus 458 e~~~i~kIgHN~KfD~~~L~~----~GI~-l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~ 531 (976)
T Consensus 83 ~~~--~~VaHNv~FD~~FL~~~l~~~G~~~~~~~~~DTveLa~i~~P~~~sy~L~~L~~~-l~i~~~------------- 146 (932)
T PRK08074 83 EGA--YFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTADSYKLSDLSEE-LELEHD------------- 146 (932)
T ss_pred CCC--EEEECCHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHH-CCCCCC-------------
T ss_conf 699--5994780540999999999739986668765199999997788788888999986-499999-------------
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000123333222111112456776322210
Q gi|254780277|r 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 (976)
Q Consensus 532 ~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~ 562 (976)
T Consensus 147 ------~~HrA~sDa~aTa~l~~~l~~~l~~ 171 (932)
T PRK08074 147 ------QPHRADSDAEVTAELFLQLLHKLER 171 (932)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------9875178899999999999999983