HHsearch alignment for GI: 254780277 and conserved domain: PRK08517
>PRK08517 DNA polymerase III subunit epsilon; Provisional.
Probab=98.99 E-value=6.1e-10 Score=91.07 Aligned_cols=156 Identities=10% Similarity=0.072 Sum_probs=105.0
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC---CCEECCCC----CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98668523233222433110012442010257766544345---50231374----433345650017889999744442
Q gi|254780277|r 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV---ETIFIDLS----VHTSQDSTGKNTLTKEILSYLKKF 456 (976)
Q Consensus 384 L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~---~~~yip~~----~~~~~d~~~~~~~~~evl~~L~~l 456 (976)
T Consensus 67 ~ke~~fvvvDlETTGl~~~~d~IIEIgavkv~~g~iid~f~tlVnp~~Ip~~It~lTGIt~emv~~aP~~~evl~~f~~F 146 (259)
T PRK08517 67 IKEQVFCFVDIETNGSKPKKGQIIEIGAVKVKGGEIIDRFESFVKAKEVPEYITELTGITYEDLENAPSLKEVLEDFRLF 146 (259)
T ss_pred CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 67883899996589989999824999999999999999874323989899888221389989982799889999999999
Q ss_pred HCCCCCHHHHCCCCHHHHHHH----HCCCC-CC-CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 022210011003212378898----61886-66-4210023455431687667724667762244422335654322210
Q gi|254780277|r 457 FENEHFLKIGHNIKYDKLVLH----RYGIS-MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530 (976)
Q Consensus 457 le~~~i~kIgHN~KfD~~~L~----~~GI~-l~-~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~ 530 (976)
T Consensus 147 i~d~--ilVaHNa~FD~~FL~~~l~r~g~~~l~n~~lDTl~LAR~~~p~~-~ykL~~La~~~-~I~~~------------ 210 (259)
T PRK08517 147 LGDS--VFVAHNVNFDYNFISRSLEEIGLGPLLNRKLCTIDLAKRTIESP-RYGLSFLKELL-GIETE------------ 210 (259)
T ss_pred HCCC--EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHCCCC-CCCHHHHHHHC-CCCCC------------
T ss_conf 6889--59993727609999999998399976898566089999875877-87889999975-98999------------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000123333222111112456776322210
Q gi|254780277|r 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 (976)
Q Consensus 531 ~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~ 562 (976)
T Consensus 211 -------~~HRAl~DA~aTaevF~~~L~~l~~ 235 (259)
T PRK08517 211 -------VHHRAYADALAAYEIFEICLLNLPS 235 (259)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -------9978458899999999999985665