HHsearch alignment for GI: 254780277 and conserved domain: PRK09145
>PRK09145 DNA polymerase III subunit epsilon; Validated.
Probab=98.96 E-value=1.5e-09 Score=88.29 Aligned_cols=157 Identities=14% Similarity=0.173 Sum_probs=96.9
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECC----CC------CCCCCCCCCCCCCHHHH
Q ss_conf 999998668523233222433110012442010257766544345502313----74------43334565001788999
Q gi|254780277|r 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID----LS------VHTSQDSTGKNTLTKEI 449 (976)
Q Consensus 380 li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip----~~------~~~~~d~~~~~~~~~ev 449 (976)
T Consensus 22 l~~~~~~~~fVv~D~ETTGL~~~~D~IieIgav~v~~~~i~~~~~f~~lV~P~~~i~~~~~~IhGIt~~~l~~ap~~~ev 101 (203)
T PRK09145 22 LFEPPPPDEWVALDCETTGLDPRRAEIVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEHGLSEEEA 101 (203)
T ss_pred HHCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEECCCEEEEEECCCCCCCHHHHCCCCCCHHHHCCCCCHHHH
T ss_conf 51589999899998568999999970699999999999993175289998979959864520138787998139999999
Q ss_pred HHHHHHHHCCCCCHHHHCCCCHHHHHHH----H-CCCCCCC-CCCHHHH--HH---HHCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 9744442022210011003212378898----6-1886664-2100234--55---431687667724667762244422
Q gi|254780277|r 450 LSYLKKFFENEHFLKIGHNIKYDKLVLH----R-YGISMRG-FEDIMLM--SY---VLDSGRSSHDIASIAQKWLSYTRK 518 (976)
Q Consensus 450 l~~L~~lle~~~i~kIgHN~KfD~~~L~----~-~GI~l~~-i~DTmla--ay---LLdp~~~~~~L~~la~~yL~~~~~ 518 (976)
T Consensus 102 l~~f~~fi~~~~--lVgHNa~FD~~fL~~~~~r~~g~~l~~~~id~~~l~~~~~~~~~~~~~~~~~L~~l~~~~-gi~~- 177 (203)
T PRK09145 102 LRQLLAFIGNRP--LVGYYLEFDVAMLNRYVRPLLGIGLPNPLIEVSSLYHDKKERHLPDAYIDLRFDAILKHL-DLPV- 177 (203)
T ss_pred HHHHHHHCCCCE--EEEECHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHC-CCCC-
T ss_conf 999998829998--999878999999999999962999999877609879999996676987788999999857-9878-
Q ss_pred CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3356543222100000012333322211111245677632
Q gi|254780277|r 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 (976)
Q Consensus 519 e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~ 558 (976)
T Consensus 178 -----------------~-~~HrAL~DA~aTa~lfl~L~k 199 (203)
T PRK09145 178 -----------------L-GRHDALNDAIMTALIYLRLRK 199 (203)
T ss_pred -----------------C-CCCCHHHHHHHHHHHHHHHHC
T ss_conf -----------------9-997989999999999999867